nudc (nudc,LOC107689540,LOC107700719)


Basic Information

Item Value
gene id nudc
gene name nudc,LOC107689540,LOC107700719
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14440800 ~ 14452371 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928374.2
GTTTTCGTGTTTCCGGGGGGCGGTCCTGTCTTGTAGCTAGGAAGTGAATACAGCTAAATCCACAGCGAGAACATTTTCATACACGTGTTTATTCATTACTGTAGATTTGAGTGTAAATCCTGGTGTGTAAAACATGGGTAGTGATGAAGAAAAGTATGACGGGATGCTGCTTGTTATGGCACAACAGCATGAAGGCGGGGTACAAGAGTTGGTGAACACATTCTTTAGCTTTCTGCGAcgaaaaacagacttttttacAGGAGGTGACCCTGGAGCTCCTGAAAAGCTGGTGAAAGAGGCATTTGCTCATCACAGCCAGCTGGCGCTCAAGAcccagagagagaaacagtccagacaggagaaagagaagaaggagaaagcaGAAAGAGCCGCCAAGCTGAAGGCTGAcgaggagagaaagaggaaggaggCTGAGAACGAGCCCAGGATCAGAGAGCTCACAGACGAGGAGGCAGAGCATCTCCAGACAGAGTTAgaccagAAGAAAgacaaggagaaaaaagagaaagtctCTGAAAGCAGTACTGCAGATGCAGCAGATAAAGCAGACAAAGGGTCTGACTCGGAAGGAGAGGAGGATGAAAAGGATAAGGATAAGATGAAGCCTAATGCTGGAAATGGAGCAGATCTCCCCAACTACAGGTGGACACAGACCCTGTCTGAAGTGGATCTCGTGGTGCCTTTCGATGTGAAGTTCCGCCTGAAGGGGAAGGACATGGTGGTGGAAGTTCAAAGGCGTCATCTGAAGGTGGGCTTAAAGGGCCACCCACCTGTGATTGACACACCACTTTTTAATGAGGTGAAGGTAGAGGAGAGCTCCTGGCTCATTGATGACGGAAAAATTGTGACCGTCCACCTGGAGAAGataaataaaatggagtGGTGGAACAAGTTGGTGACCACAGACCCTGAAATCAACACCAAGAAAATCTGCCCAGAAAACTCAAAGCTTTCTGATCTGGATGGTGAAACACGCAGCATGGTGGAAAAGATGATGTATGACCAGAGGCAGAAGTCCATGGGCCTGCCCACCTCTGAGGAGCAGAAGAAGCAGGACATCCTGAAGAAGTTCATGGAGCAGCATCCTGAAATGGATTTCTCCAAAGCCAAGTTCAGCTGAGAACCCCTGCATTCTGCATTTACAAGCTTCTTATCCAGAGCGTTCAACATTTCTGTCCACTGATCCATGTGTTGCTCCTTTACTGCACAGTGAAAAAGGTCCTCTTCACAGTCATGTCGCATATTTCACTGTGTTCTGCATATTTAATTCatgtttacacttttttaaataaataaatttaaacttcATGACTTGAAA

Function

symbol description
nudc Predicted to enable unfolded protein binding activity. Acts upstream of or within cilium assembly and determination of heart left/right asymmetry. Predicted to be located in microtubule. Predicted to be active in cytoplasm. Orthologous to human NUDC (nuclear distribution C, dynein complex regulator).

NR:

description
PREDICTED: nuclear migration protein nudC

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928374.2 True 1339 mRNA 0.46 9 14440800 14452371

Neighbor

gene id symbol gene type direction distance location
arid1ab LOC108272722,LOC108415569 coding downstream 52334 14320865 ~ 14388466 (-)
tbc1d5 tbc1d5,LOC107592018,LOC107739565,LOC107748680 coding downstream 222630 14195955 ~ 14218170 (-)
dazl dazl coding downstream 245334 14172834 ~ 14195466 (-)
mpp6b mpp6,LOC108272353,LOC107592011 coding downstream 272204 14139944 ~ 14168596 (-)
ccdc126 ccdc126 coding downstream 366625 14067317 ~ 14074175 (-)
kdf1b LOC108273298 coding upstream 8021 14460392 ~ 14470818 (-)
tmem222b tmem222,tmem222b,LOC108273317,LOC103043641,LOC105903612,LOC107550652,LOC107754919 coding upstream 29566 14481937 ~ 14491263 (-)
trnat-ugu_14 NA coding upstream 90846 14543217 ~ 14543289 (-)
trnat-ugu_15 NA coding upstream 93735 14546106 ~ 14546178 (-)
epb41a epb41,LOC107712606 coding upstream 99673 14552044 ~ 14586242 (-)
G405707 NA non-coding downstream 55150 14378892 ~ 14385650 (-)
G405681 NA non-coding downstream 111600 14256524 ~ 14329200 (-)
G405701 NA non-coding downstream 125966 14313739 ~ 14314834 (-)
LOC117596429 NA non-coding downstream 249045 14183486 ~ 14191755 (-)
G405575 NA non-coding downstream 363650 14076442 ~ 14077150 (-)
G405900 NA non-coding upstream 166278 14618649 ~ 14686310 (-)
G405901 NA non-coding upstream 166967 14619338 ~ 14654751 (-)
G405906 NA non-coding upstream 192482 14644853 ~ 14966111 (-)
G405909 NA non-coding upstream 235652 14688023 ~ 14720906 (-)
G405917 NA non-coding upstream 247897 14700268 ~ 14704312 (-)
G405588 NA other downstream 321142 14114619 ~ 14119658 (-)
npy npy other downstream 356954 14081372 ~ 14083846 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 679243 13759761 ~ 13761557 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 882169 13556156 ~ 13558631 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other downstream 896295 13542003 ~ 13544505 (-)
tpbga LOC108272337 other upstream 23105 14475476 ~ 14479077 (-)
G405961 NA other upstream 515105 14967476 ~ 15013988 (-)

Expression


Co-expression Network