ndufv1 (ndufv1,LOC108437925,LOC103023083,LOC107693353,LOC107589403,LOC107101109)


Basic Information

Item Value
gene id ndufv1
gene name ndufv1,LOC108437925,LOC103023083,LOC107693353,LOC107589403,LOC107101109
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12761712 ~ 12770681 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928395.2
GGTGGCGGTATGCGCTCACTTGCTTTCCGCAGCAGCatcagaagaagcagaagaagaagaagtattTCCGGGTCCGCTCGCTAATGTTTTCCGCTCAACAGTTTCACTAAGCTGAGATCCGGGGAGCATACACGAAGGAAAGGATGCTGGCTTGTCTCGGCTGTCCTGGACTGAGTCGCACGCTCAGCTCAGGGGTGTTGCATCTGCCCAACACTTTTGCATCTCGCGCTCCCACGATCTCCACTTCAATCAGCAGAGGAAGCCACGTGGCATTAGTGCGCTACAACAGCACGGCCCAGCAGGAAAACGTCAAGAAAACAAAGTTTGGACCTTTGGCTGACCAGGACAGAATTTTCACCAACCTTTACGGGCGACATGACTGGAGGCTGAAAGGTGCATTAAGTCGTGGTGACTGGTACAAGACCAAAGAGATCTTGGAGAAGGGAGTGGACTGGATCCTCAACGAGATCAAAGTGTCGGGTCTGCGTGGGAGAGGAGGAGCTGGCTTCCCCACAGGGATGAAGTGGAGCTTCATGAACAAGCCCAGCGATGGCAGGCCTAAGTACCTGGTGGTGAATGCTGATGAGGGAGAACCCGGCACCTGCAAAGACCGAGAGATCATGCGCCATGACCCACACAAGCTGGTGGAGGGCTGCCTGGTTGCGGGTAGGGCCATGGGAGCGCGCGCTGCTTATATCTATATCCGTGGAGAGTTTTACAACGAGTCTTCCAATCTCCAGGTTGCCATTAACGAGGCGTATGGAGCAGGGCTGATTGGAAAGAACGCCTGCGGCTCTGGCTACGACTTTGACGTGTTTGTGATGCGCGGTGCTGGGGCTTACATCTGCGGAGAGGAAACAGCTCTGATCGAGTCCATTGAGGGTAAACAGGGGAAGCCCCGTCTGAAGCCGCCTTTTCCTGCTGACGTGGGAGTGTTTGGTTGCCCAACAACTGTTGCGAATGTAGAAACGGTGTCTGTAGCCCCAACTATCTGCCGTCGCGGTGGCTCATGGTTTGCCAGTTTCGGCAGAGAGAGGAACTCCGGCACAAAGCTCTTCAACATCTCCGGTCATGTGAATAACCCCTGCACCGTGGAGGAGGAGATGTCTGTTCCGATGAAAGAGCTGATTGAGAGGCATGCAGGTGGTGTCCGTGGAGGCTGGGATAACCTCTTGTGCGTGATTCCCGGTGGGTCGTCAACACCACTCATTCCTAAACATGTGTGTGAGGATGTTCCCATGGACTTTGACGGCCTCATACAGGCTCAAACCGGCCTGGGTACTGCAGCACTCATCGTCATGGACAAATCGACGGATGTAATCAGAGCTATTGCACGGCTGATCGAATTCTATAAGCATGAAAGCTGTGGCCAGTGCACCCCCTGCAGGGAAGgagtgGATTGGATGAATAAGATGATGTGGCGCTTCGTTAAGGGAGACGCACGGGCAGCAGAGATTGATATGATCTGGGAGCTCAGCAAACAGATTGAGGGTCACACCATTTGTGCTCTGGGTGATGGAGCTGCATGGCCTGTTCAGGGTTTGATCCGTCACTTCCGTCCCATCATGGAGAGCAGGATCTCAGAGTTCCAGCAGAAACAGCAAGCTCGGGCTTAGTTTCAGCATCTCCTCTTTCCCCTTTTATCctaatatacattattatttaagaataaaaGTGCTGTCTGACACTTA
>XM_026928396.2
GCTCAACAGTTTCACTAAGCTGAGATCCGGGGAGCATACACGAAGGTAAATAGGTGCTGAAAGGATGCTGGCTTGTCTCGGCTGTCCTGGACTGAGTCGCACGCTCAGCTCAGGGGTGTTGCATCTGCCCAACACTTTTGCATCTCGCGCTCCCACGATCTCCACTTCAATCAGCAGAGGAAGCCACGTGGCATTAGTGCGCTACAACAGCACGGCCCAGCAGGAAAACGTCAAGAAAACAAAGTTTGGACCTTTGGCTGACCAGGACAGAATTTTCACCAACCTTTACGGGCGACATGACTGGAGGCTGAAAGGTGCATTAAGTCGTGGTGACTGGTACAAGACCAAAGAGATCTTGGAGAAGGGAGTGGACTGGATCCTCAACGAGATCAAAGTGTCGGGTCTGCGTGGGAGAGGAGGAGCTGGCTTCCCCACAGGGATGAAGTGGAGCTTCATGAACAAGCCCAGCGATGGCAGGCCTAAGTACCTGGTGGTGAATGCTGATGAGGGAGAACCCGGCACCTGCAAAGACCGAGAGATCATGCGCCATGACCCACACAAGCTGGTGGAGGGCTGCCTGGTTGCGGGTAGGGCCATGGGAGCGCGCGCTGCTTATATCTATATCCGTGGAGAGTTTTACAACGAGTCTTCCAATCTCCAGGTTGCCATTAACGAGGCGTATGGAGCAGGGCTGATTGGAAAGAACGCCTGCGGCTCTGGCTACGACTTTGACGTGTTTGTGATGCGCGGTGCTGGGGCTTACATCTGCGGAGAGGAAACAGCTCTGATCGAGTCCATTGAGGGTAAACAGGGGAAGCCCCGTCTGAAGCCGCCTTTTCCTGCTGACGTGGGAGTGTTTGGTTGCCCAACAACTGTTGCGAATGTAGAAACGGTGTCTGTAGCCCCAACTATCTGCCGTCGCGGTGGCTCATGGTTTGCCAGTTTCGGCAGAGAGAGGAACTCCGGCACAAAGCTCTTCAACATCTCCGGTCATGTGAATAACCCCTGCACCGTGGAGGAGGAGATGTCTGTTCCGATGAAAGAGCTGATTGAGAGGCATGCAGGTGGTGTCCGTGGAGGCTGGGATAACCTCTTGTGCGTGATTCCCGGTGGGTCGTCAACACCACTCATTCCTAAACATGTGTGTGAGGATGTTCCCATGGACTTTGACGGCCTCATACAGGCTCAAACCGGCCTGGGTACTGCAGCACTCATCGTCATGGACAAATCGACGGATGTAATCAGAGCTATTGCACGGCTGATCGAATTCTATAAGCATGAAAGCTGTGGCCAGTGCACCCCCTGCAGGGAAGgagtgGATTGGATGAATAAGATGATGTGGCGCTTCGTTAAGGGAGACGCACGGGCAGCAGAGATTGATATGATCTGGGAGCTCAGCAAACAGATTGAGGGTCACACCATTTGTGCTCTGGGTGATGGAGCTGCATGGCCTGTTCAGGGTTTGATCCGTCACTTCCGTCCCATCATGGAGAGCAGGATCTCAGAGTTCCAGCAGAAACAGCAAGCTCGGGCTTAGTTTCAGCATCTCCTCTTTCCCCTTTTATCctaatatacattattatttaagaataaaaGTGCTGTCTGACACTTATATCTGGACTGTCATCACCATCCAACTTGTAATGCATTTGCTTCCAGTctaaaaataactaataaagTTCTGTGAATTA

Function

symbol description
ndufv1 Predicted to enable several functions, including 4 iron, 4 sulfur cluster binding activity; NADH dehydrogenase (ubiquinone) activity; and nucleotide binding activity. Predicted to be involved in mitochondrial electron transport, NADH to ubiquinone. Predicted to be located in mitochondrial inner membrane and respirasome. Predicted to be part of mitochondrial respiratory chain complex I. Is expressed in several structures, including alar plate midbrain region; immature eye; musculature system; optic tectum; and pronephric duct. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 4. Orthologous to human NDUFV1 (NADH:ubiquinone oxidoreductase core subunit V1).

NR:

description
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0010181 FMN binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function
GO:0051287 NAD binding molecular_function

KEGG:

id description
K03942 NDUFV1; NADH dehydrogenase (ubiquinone) flavoprotein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928395.2 False 1691 mRNA 0.53 11 12761791 12770681
XM_026928396.2 True 1691 mRNA 0.52 11 12761712 12770589

Neighbor

gene id symbol gene type direction distance location
kmt2ba LOC108272954,LOC107701550 coding downstream 37197 12687762 ~ 12724515 (-)
si:ch211-288g17.3 LOC108273223 coding downstream 112393 12636850 ~ 12649319 (-)
styk1a LOC108273367 coding downstream 279570 12465737 ~ 12482142 (-)
zgc:194578 LOC108273361 coding downstream 299356 12447738 ~ 12462356 (-)
si:ch211-232m10.6 LOC108272566,LOC108439912,LOC101076817 coding downstream 321365 12434972 ~ 12440347 (-)
hcn3 hcn3,LOC108437924,LOC107739502,LOC102783101,LOC103358769,LOC102202422 coding upstream 1240 12771921 ~ 12783866 (-)
si:ch211-81a5.8 NA coding upstream 20115 12790796 ~ 12793315 (-)
clk2a clk2,LOC108437923,LOC107724099,LOC107599513,LOC107656479,LOC107589405 coding upstream 25050 12795731 ~ 12813429 (-)
setdb1a setdb1,LOC108272679,LOC106574954 coding upstream 45390 12816071 ~ 12835472 (-)
lrrc71 lrrc71 coding upstream 67523 12838204 ~ 12855492 (-)
G404719 NA non-coding downstream 75244 12686190 ~ 12686468 (-)
LOC113535190 NA non-coding downstream 84066 12663011 ~ 12677646 (-)
G404692 NA non-coding downstream 126499 12601632 ~ 12635213 (-)
G404687 NA non-coding downstream 170179 12589272 ~ 12591533 (-)
G404682 NA non-coding downstream 182906 12576532 ~ 12578806 (-)
G404799 NA non-coding upstream 46903 12817584 ~ 12942105 (-)
G404818 NA non-coding upstream 143260 12913941 ~ 12923945 (-)
G404896 rprd2 non-coding upstream 213032 12983713 ~ 12984373 (-)
G404900 NA non-coding upstream 221520 12992201 ~ 12993258 (-)
G404904 NA non-coding upstream 228562 12999243 ~ 13002077 (-)
trnav-cac_26 NA other downstream 182061 12579580 ~ 12579651 (-)
trnav-aac_26 NA other downstream 182911 12578729 ~ 12578801 (-)
trnav-cac_25 NA other downstream 184052 12577588 ~ 12577660 (-)
trnav-aac_25 NA other downstream 184908 12576732 ~ 12576804 (-)
trnav-aac_24 NA other downstream 186897 12574740 ~ 12574815 (-)
G404999 NA other upstream 370013 13140694 ~ 13141115 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other upstream 619235 13389916 ~ 13392833 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other upstream 771322 13542003 ~ 13544505 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other upstream 785475 13556156 ~ 13558631 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 989080 13759761 ~ 13761557 (-)

Expression


Co-expression Network