si:ch211-288g17.3 (LOC108273223)


Basic Information

Item Value
gene id si:ch211-288g17.3
gene name LOC108273223
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12636850 ~ 12649319 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928404.2
CAAAAAGGACACGGAAAGACGTTAGATTTCAAATAATCGCATCCGCCAGCCTTCTTGTGTCTGGTGCTGTTTGCATCGAAATTATTGTTGAGTGCATGCGAGAGAACTCTTCTGCCCTGACTTAAAGGGTGAATAAAATTTAGCAGTCGGAGAAGACAAGCCTGGGTGAAGGTCCCAGACCCTCAGTAAGGCTTAAATAACATTGTGATGGAGGTTGAACAGAAGGATGACTCTAGCAACACTCTGGCCAATGGAAGTGCCAATTCAGGCAAACGTGGCAGGGGCAGACCACGAGGCtcagttaagaaaaaaaattatctctGTGAAAGAGGTATCTCACAATGCTAGGGCATCCAAAAGAGTGGATTTCTTTTCACCTGAGACGGTGATAAGGCCAAAAGTCAAGAAGCGTGGTCGTCCGAAAAAGATAAAAATTCCAGGAAGACCGAGAAAGATTCCCCTTACACCAGAGGAAGAAGCAGAGAGAATTTTAAGATTGAGCAAGAAACGGAAACTTTCAAAGCCTCTTGGGAGACCCCGCATTCATCCCCTTGTAGACATGCCAAAGGAGAAAAGGGGAAGAGGTAGACCACGCAAATATGAATCCATGGCTTCACAAAATGGCAGAATTGACGGGAACCTGAAAAGTGTAAAGATCACTGAAGTTGGTGGAGACACTCCTCGAAGGAGGGGAAGGCCAAGAGGCTCGTTTAAGAAGAAACGGGGACGGCCAGCAGGTCCATCTCCAGCGAAAAGGCCAATAGAAGGGACTCCAGGAAAAAGGGGGCGACCTCCAGGCTCTGGAACCAAGCTACAGGTCAAGCAGGATGCGAATGGAACTCCTCGAAAGAGGGGCAGACCCCCAGGCTCTGGACGAAAGCTAAAGGTTATTTCAGGTGAAACAAATGGAACTCCTAAAAAGAGAGGGCGGCCTCCAGGATCTGGGACGAAGGTAAAGGTTGCAAAGCAGCTGACGGATGGAATTCCCAGAAAGAGGGGACGTCCTCCAGGTTCTGGGACCAAGGTCAAAGGTCTACTCCAGGAGACGAATGGAAGCCCTCGGAAGAGAGGACGACCACCAGGATCAGGAAAAGTCAAGACAATTACAGAGGAGGCTGAACATGTTCTCACTAACAGTACCTTCTCTGTTGATGCCCAGCCTCGTAAGAGGGGCCGTCCTAAAAAGGCTGAAGCCTTTCCAGCCGTTCAAGCTGAAGAAGGAAAGAGCAAGGAGAATGATGAACCCTCGCCCAAGCGACCCCGTAACTCATTTGCCTCTACCAAGAATTCAAGTAAGCCAGACGCTGAAGACCAAAAGGCCAGTGAGAATGATGGTTGCCACGTGGCTACAACAGTAGAAAATCCTGTTCTGTCTGCTGGAGGTGCTGCAAAACCAGACAATATAGAACAGGTTGGTGAGGATGAGCTAAATGATGCCTCGGTAGAGGAGGTTCATGAGAGTAACAGCAGAAAGATTTCATCCTCAAGGGTAGCAGGTAAATCccaaaaaaagaagtaaatcaTTGGGTAGTATAGAgcacaaatatttttgaatgggTTTTTACCAGATTTCATACAAATTGTTTGACTTGTCCCGAAGGTTAGTAATgcagatatctttttttttttttttttttttttttttcctgttgctCAGCTCTTGTGCTTTTGCATgtcttttaaagaaatgtttattttgataCTCTATGGTACACCACCTTCATATAAATCCCCATTGAAACAGACATTTACAAATGCAGATTTTGAATTGCATTCAGAGACGAAATGGAATTCAAATTTTTAGGCAAGTAATCATCTGCCTACAGTCTGTCTGCATGACTAGCTGTCTAAGCAAGTCTTAGTACACtgagcatttttattatttatacaaatttatTAGGTGCGGAAATAAGCTATTTCAGGACTATTCGGCAATTCtgctaaaaaaatttttatatcaACGGCAAGATCAAATGGAACATGAACTACATTTTATGCTAGTCTGTATTGGTGTGTCTTGAAATTACACCTGTGTTTGGAAGAAGCCTGAAATTTCCTCTAGGCTTGATGCTGGATGTTGAAGAATGCTTGTTAGAGAAGTATTGGTGCAGGATCTATggtgggtttttgtttgtttgtgttttttttttttaatctgaattttaaTAGAAGCATTTGTCAAGAAAAAATGGCATGCAGTTTAATGGTCCCATCACTGGACGGCAAAACATCAGACTATTCTAGCTAGACATCACTGCATCCTGAGCCTGTGCTGCCATCCGTGCAATCCACTCAACAGGTCTTAAAAGTGTCATGTGTACCCATGGGTGCTTGaatttatatagatatattaaaaaaacaggaattaaAAATGTTCAACTGAAATTTGTTGAAAGATGAAAGTTGTTTGATATGCATGAAACACGTcgtgaaatgcataaaatctctttgtatttgttaaaaaaaaaaaagtgattggCAGTATACCGGTTTATAAAACAGACCCCGGAGTTTGTAGCTCTAACTCGAGAGCCATTTTAGACACAGTTTGTGTCTTCACCAGCTGTtgactgaagaacactgaagcGGGTGGCTGATTTTATCCTTTCGGGGGTTGTGTGTTCCCTGTGACCAGTAAGcagttttaaaattttcagGTGCATGATGTGGTGACTGAGGAATTACTGAATTTTAGAtcttttaataatgtattaggaACATCGGCTATGTAGCACAGCTCCAGCGtcactatatatttttttttaatcaagagtCTTGACATTGTTTCCATAAAATGTGGAATATGTATCATAGCATACACATTTCCATAAAAATGTGTATGCTGTTGTATGTACTATTACTGTCCAAGATTGGCAAAGCATAGTTATGCTttgttttaagattattaccTACTGCTATAAAAAATCGGCCTGACAATATTAAAAAGCAGTTTTGCTCAATTAAGTGTCTAATAATGTTTTCCCATACTCCCCTTATCATGTGACATGTACAGTTGCATTCAAAGTTGGTGTTATGACAGcttacttttattcatttgtgtgtgtaaaacgtattatttttttttttaaatgaatttccaTTCGTTTAGAAAGTAACATTGTAATTATACCTGTTATAAAGCAGGAGTTGAATGTCCATGTGATGTTTTCTTTCATGATTGTGAAgacgtttttttaaaaaaaaatttctgcttAATTATTTTTCAGGGCATAAACTAAAAGGACATTTACACAACAGAAGCTATAGTTATTAGAACCTCttagaatttaattttatgGCAGTTTGAAACATGAGACcacagtgaagttttttttttttgttttgtttttgttaaattactAACCATGtgaacagaaatatttatatgtaaatctAGTTGTTTATGTTGCTAATGTTCTGGTTCTGTTTGTCAGATTGTATTTGTTGACATTTCTGTCCAAAATGTTCACAACTAATTGGCAGCCATGAAAATAATTGTTTCAATTAGCTATGGTTATGTGATTATGTACTGCATTACAAGtttgtataattaaaaaagttCCATACTTGCTACAtcagttttctaaaaaaaatcagtttccaTGACTTTTTATTGCAATTTCTCTTGATTGATGTATAAACGTTGAAGTTCAGAAAAAGATCTTCCTGTGATTATATTTGTGGCACTTCTGTTCCTGTTCTGAAATGTGTTCAGACTTTGTCTAAAAACTCTGGATGGAAACTTAAAAATGGTTCccccctccctttttttttttttaccatcacTGTTCAGAAAGCACTGATTGTGGTTTTGAATTTACTAAAGCAACAATGTCATTACATTCTCATTGCTGAAGCAGAGTCCTTCTTTCTCCCTTTAGTGGTTCAAATGCTTAATAACATCCGAAAAGGAGAGTGAAGCCCTTTAGCCCTTTCAAGAAATGTGATACCTTTCTATGATTTAGGAGAGGTCTAAAACATTCAAAAGTTGGTACCCTAGgctagaataaaataaaaaccacctGTCAGAGGGCAACATTTGAGCTGAAATCTAAGTGTTATACATAAACTTCATTGAACTGCAAGTGTGGGATAGACTACATGTGGTGTTTTCCAGTCTGCAGCTTGCGCTTGTGgaatttgctgttgtttaaTTTAGTTTCAGTAGATGGGTATAATGCCTTGATATTTGACAGTAGATGTGTACATCCCTGGTAGAAAGTGTATATAAAgcaacttttttcccccctaaaatGACTGATCCTAACCATTTTGCTTAGAATAGATGTATTAGCTTCCAGCAAGTGCATAGGCTTGTTTTCTACTATAGTAACTTCTTTGATGTTTGATTTATACATTAATCTGTACTCTTAACAATTAGAAGCTGTTTAATGTGAGCActtgtatttgatattttttctttaataaaatgctttctTCAACCATA

Function

NR:

description
PREDICTED: chromosomal protein D1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928404.2 True 4447 mRNA 0.38 2 12636850 12649319

Neighbor

gene id symbol gene type direction distance location
styk1a LOC108273367 coding downstream 154708 12465737 ~ 12482142 (-)
zgc:194578 LOC108273361 coding downstream 174494 12447738 ~ 12462356 (-)
si:ch211-232m10.6 LOC108272566,LOC108439912,LOC101076817 coding downstream 196503 12434972 ~ 12440347 (-)
ccdc106b cc106,LOC108273335 coding downstream 209461 12420503 ~ 12427389 (-)
u2af2b u2af2,u2af2b,LOC103026862,LOC107656609,LOC108439900 coding downstream 222058 12399540 ~ 12414792 (-)
kmt2ba LOC108272954,LOC107701550 coding upstream 38443 12687762 ~ 12724515 (-)
ndufv1 ndufv1,LOC108437925,LOC103023083,LOC107693353,LOC107589403,LOC107101109 coding upstream 112393 12761712 ~ 12770681 (-)
hcn3 hcn3,LOC108437924,LOC107739502,LOC102783101,LOC103358769,LOC102202422 coding upstream 122602 12771921 ~ 12783866 (-)
si:ch211-81a5.8 NA coding upstream 141477 12790796 ~ 12793315 (-)
clk2a clk2,LOC108437923,LOC107724099,LOC107599513,LOC107656479,LOC107589405 coding upstream 146412 12795731 ~ 12813429 (-)
G404692 NA non-coding downstream 1637 12601632 ~ 12635213 (-)
G404687 NA non-coding downstream 45317 12589272 ~ 12591533 (-)
G404682 NA non-coding downstream 58044 12576532 ~ 12578806 (-)
G404681 NA non-coding downstream 59566 12575080 ~ 12577284 (-)
G404667 NA non-coding downstream 121640 12514471 ~ 12515210 (-)
LOC113535190 NA non-coding upstream 13692 12663011 ~ 12677646 (-)
G404719 NA non-coding upstream 36871 12686190 ~ 12686468 (-)
G404799 NA non-coding upstream 168265 12817584 ~ 12942105 (-)
G404818 NA non-coding upstream 264622 12913941 ~ 12923945 (-)
G404896 rprd2 non-coding upstream 334394 12983713 ~ 12984373 (-)
trnav-cac_26 NA other downstream 57199 12579580 ~ 12579651 (-)
trnav-aac_26 NA other downstream 58049 12578729 ~ 12578801 (-)
trnav-cac_25 NA other downstream 59190 12577588 ~ 12577660 (-)
trnav-aac_25 NA other downstream 60046 12576732 ~ 12576804 (-)
trnav-aac_24 NA other downstream 62035 12574740 ~ 12574815 (-)
G404999 NA other upstream 491375 13140694 ~ 13141115 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other upstream 740597 13389916 ~ 13392833 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other upstream 892684 13542003 ~ 13544505 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other upstream 906837 13556156 ~ 13558631 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 1110442 13759761 ~ 13761557 (-)

Expression


Co-expression Network