tuft1b (LOC108272645)


Basic Information

Item Value
gene id tuft1b
gene name LOC108272645
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13646267 ~ 13678291 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928526.2
CTTCAGCCGCAGcaataaaccacacacacacacgcacacacacacacacacacacagcgaccCGAGTGCTCGTGCCCAGGTGAGCAGTGTTTGCTGCTGTGCAGTGCAGATGGAGGACTCAcgcagagcagagcagcaggaGAACAGCGCGATAAAGGAAACTGACATCTGTAAGCTCACAGTGCATGACTACAACCAGAATCTAGTCACCGAGACGCTAAACGATATCGCCAACAAGcCTGCAGTGATTTGTGGAAAGCAGTGCCAGATAAGGCCAGATTCCAGCAGGCTTTTAGGAGAGAAGATCGAAGTCATCAAGGTGTATCTTGAACGAGGCAGACAGGAGCAGGACAAGGAGCAACAAAGTGTCACAATGCTGACTGACGAGGTTTCACAAATACAGGAGGTGAGATATTGCCTGAAGACTCTGAGGGAACAGATGGCAGCCcgaaataataacaataacaagAGTCCAGCCAATGGGATCCGAGTTAATATGCCCAGCAGCAAATCCCCTGTCTCCAACGCCGGTGTGGACGCGCATGTCCCTGAGAGCCAGGAGCAAGAGTGTGTGAGGTTGAGAGAGATGACCAAACGTCTATATGCTCAGCTGCAGGAGGTAGAACAGAGACACCAGGAGGACATAGAGGCATTGCAGGCAGAGAACAGAGAGTGCCTGCGGCGTTTGGAGGAGCAAAACCAGCATCTGAGGCAGGCCCAGAACGAGGCAGAGGGGCGGGGCCAACGCATTGAGGAGCTGCAGACACTTCTAGGAAATCTGAAGCTTGAGAATGCCAGCCTTCATGACAAAATGGCTGCAGGCGAGGCTGAACTTCAGGATCTCAGAGCACTGAAGGAAGGGGAAGATGAGAAAAGatGTAAACAACTGGAAAAAGAGCAGGCCGTTCTGAAGGAAAAAATCCATCACCTAGATGACATGTTAAAGAGCCAACAGAGGAAAGTGAGACACATGATCGAGCAgCTTCAGAACTCTCGGACTATGATGGAGGAGCGCAACCGTCTGATTGGCGATCTAGAGGAAAAAGTGGGTTTTCTGGAGGCAGAGAACAGAGAGATGCGGGACCAGATAGAGTTCTGTCTGGGTGATCAGACACCCAGCTCTTTTCAGTCAGAGAAGGAAGCTCAGATTGTCTACAGCAAGCCTTTGACACCAACGAGCCCCGGAAACAAGTCTCTGCCCTTCATCAAAGTGATCGAGATCAAGTCctgagtacacacacagaggaagctGTGAGgcatgcatatacagtatacatgtaCCTCATTATATTTTTCATGTAACATCAGTTACAGAATGAGGCTGTACAGACAGAAATCAATCATTTACAGAACACCTTAATAGCTTCTttagtaaaataaaactaataaataatagcttatttgttttaattatagcATAATTTGTTGCACACATGATCATAGATCAGACAAAAAATAAGGGCCAGTGGTGAAAATTAAGTATTTAGATTTTAATCTATCGTCATCAACATTAAAAATACCCCAGAACACCCAGTTACTGTTTCAATACAAACCATGTaaatagaatgtgtgtgtgtgtgtgtttgtacagtatgAATATAATAATGCTGGTTAAATGAGTGCTAGACCCATCTATTCTGCCAGCTCCCatattaaatgtgaaatataaacaCCTCCCGCTGTTAATAGAAGCTGTATAGTTAATATTTTGCTATATATTATGATGTAGTTCTGTATTTATATCATGAATTTTGTGGATCCAAATAAAGTTAAGTGAAAGTTT

Function

NR:

description
PREDICTED: tuftelin-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928526.2 True 1783 mRNA 0.45 12 13646267 13678291

Neighbor

gene id symbol gene type direction distance location
ubap2l ubap2l,LOC107599491 coding downstream 8142 13603327 ~ 13638125 (-)
hax1 hax1 coding downstream 46647 13591039 ~ 13599620 (-)
aqp10b LOC108272648,LOC108433769,LOC107599561 coding downstream 59717 13575684 ~ 13586550 (-)
LOC113535306 NA coding downstream 97052 13548417 ~ 13549215 (-)
chrna11 si:ch211-39a7.1,LOC108273254,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611 coding downstream 120167 13489949 ~ 13526100 (-)
cgnb LOC108272895 coding upstream 10831 13689122 ~ 13726155 (-)
pygo2 LOC108273220,LOC108433763,LOC103036475,LOC107693316,LOC107729895 coding upstream 50836 13729127 ~ 13734761 (-)
s100s s100s,LOC108272970,LOC108433762,LOC103039105,LOC107716593,LOC107670010,LOC107559723 coding upstream 68587 13746878 ~ 13750502 (-)
s100u LOC108272971,LOC108433761 coding upstream 74522 13752813 ~ 13758428 (-)
pbxip1a LOC108273227 coding upstream 83364 13761655 ~ 13771533 (-)
G405353 NA non-coding downstream 40375 13601027 ~ 13605892 (-)
LOC113535067 NA non-coding downstream 82318 13559889 ~ 13563949 (-)
G405206 LOC108273195,LOC108437913,LOC103394518,LOC103356295 non-coding downstream 191470 13452399 ~ 13454797 (-)
G405144 NA non-coding downstream 279491 13366437 ~ 13366776 (-)
G405032 NA non-coding downstream 427787 13218279 ~ 13218480 (-)
G405386 NA non-coding upstream 57245 13735536 ~ 13735748 (-)
G405419 NA non-coding upstream 130192 13808483 ~ 13814892 (-)
G405420 NA non-coding upstream 137607 13815898 ~ 13872428 (-)
G405575 NA non-coding upstream 398151 14076442 ~ 14077150 (-)
LOC117596429 NA non-coding upstream 505195 14183486 ~ 14191755 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 87636 13556156 ~ 13558631 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other downstream 101762 13542003 ~ 13544505 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other downstream 253434 13389916 ~ 13392833 (-)
G404999 NA other downstream 505152 13140694 ~ 13141115 (-)
trnav-cac_26 NA other downstream 1066616 12579580 ~ 12579651 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 81470 13759761 ~ 13761557 (-)
npy npy other upstream 403081 14081372 ~ 14083846 (-)
G405588 NA other upstream 436328 14114619 ~ 14119658 (-)
tpbga LOC108272337 other upstream 797185 14475476 ~ 14479077 (-)
G405961 NA other upstream 1289185 14967476 ~ 15013988 (-)

Expression


Co-expression Network