hcn3 (hcn3,LOC108437924,LOC107739502,LOC102783101,LOC103358769,LOC102202422)



Basic Information


Item Value
gene id hcn3
gene name hcn3,LOC108437924,LOC107739502,LOC102783101,LOC103358769,LOC102202422
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12771921 ~ 12783866 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026928544.2
ATGGACAGCTCAAGTGGACAAGCAGGCAGTGAGAGCTGTCCTCCTCCGAATGGAGACTCCAGAGCTCGGGGCAGGTTCTCCTTCTCTGCCTGGcgctcctcctctctgtcctccGCACacggagctggagctggaggtgGAGGGGATCTGAGCCGGAGGCTCCTGAGTCTTGTTCGTAATTACCACGAGAGAGCTGCTTCTACAGCCGACTTTAACACCAAACCCACTGAGGTGACAGTGGGGGTAGACGGACTGACCACGGCCGAGCCATCTGCAGGGACCTCATTTACTTCTAATATGGAGGAGTGTGAGTCCAGGGACCAGTCCACTTACCTCCACAAGCAGCTGAGCTCCATGTTACAACCCGGAGTCAACAAGCACTCGCTGCGCATGTTCGGCAGCACCCAAGGAGTCGCagctgagcaggagagagtccGCTCCTTTGGGGTCTGGATTATACATCCATACAGTGACTTCAGGTTCTACTGGGACTTGGTAATGCTCTTTCTGATGATGAGCAATCTTGTCATCCTGCCGTGGTGCATCACCTTCTTTGAGGATCAGAACACACTGCCATGGATCATGTTCAACATGGCCTCAGATACACTGTTCCTGACTGACCTAATCCTGAACTTCCGCACAGGAATCCTGGAGGACGATAACTCCCATATCATCTTAGACCCACAGGTGATCCGACGCCGATACCTGCAGGGCTGGTTCcttgtggatttcatctcttCCATCCCAGTGGATTATATTTTCCTAGCTGTGGATCTGGAGGCTCGGCTCGAGTCAGCGGAAGTGTATCGCACCGCTAGAGCATTAAGAATTGTCCGTTTCACTAAGATCCTCAGTCTGCTTAGGTTACTACGTCTGTCCAGGCTTATCCGCTACATTCACCAGTGGGAAGAGATCTTTCACATGACATATGACCTGGCAAGTGCCGTGGTTCGAATAGTCAACTTGATTGGGATGATGCTTCTACTGTGTCACTGGGATGGCTGTCTTCAGTTCATGGTGCCCATGCTTCAGGATTTCCCCCAGGACTGCTGGGTCTCCAAAATCAACATGGTGAATGCCACTTGGGAGGAACAGTACTCATACGCTCTCTTCATGGCCATGAGCCATATGCTGTGCATTGGATACGGTGCCCAAGCTCCTGAGAGAATGACTGACGTCTGGCTCACCATGATGAGCATGATTGTAGGTGCCACTTGTTATGCCATGTTCCTGGGCCATGCGACCAACCTGGTGCAGTCACTGGACGCCTCCCATCGCCAGTACCAGGAAAAGTATAAGCAAGTGGAGCAATACATGTCCTTCCATAAGTTGCCTGCTGAATTGCGACAAAGAATTCATGACTATTACGAGCACCGTTTCCAGGGGAAGATGTTTGATGAGGACAGCATTCTGGGAGAACTCAATGACCCGCTTAAAGAGGAGATAGTGAGCTACAATTGCCGTGAACTGGTAGCAAACATGCCGCTGTTTGGCAACGGTGATCCACACTTTGTCACTGTGCTCCTGACTAAGTTGCGGTTCGAGGTTTTCTTGCCAGGTGATGTCATTATTCGCGAGGGCACACTGGGCCGTAAAATGTACTTCATCCAGCATGGCTGTGTCACTGTCATCACCCGTaacaagaaggaaaagaagCTCACCGATGGCTGCTACTTCGGGGAGATTTGTTTGCTGACCAGTGGGCGTCGTACTGCCAGCGTGCAAGCCGACACCTACTGCAGACTCTATTCTCTCAGTGTGGACAGCTTTAACGAGGTGTTGGAAGAGCACCCCATCATGAGGAGGGCCTTTGAGACTGTCGCAATAGACCACCTTGACCACGTAGAGAACAATACTGCATATAAAGCCACGCCTTCAGGAGCAGCCACAAAGGAACAGAcgaaagagaaaacagacagTGACATATTATAACATCTTGTTAATTATTCCTTTTTGTCATCCACCATATTGAGTGTCGTCACCATCATTGGACACCAGTATATGAGCCAAAACGGACTTGTTCCAGGGATCAGCTGCCTAAAGGACTGGTTTAGCCGATtaggacatttttttaaaaccctggTATCAAAATGCATCCATTATGTGCATACAGTAGTCAGATAGCAAGTGCGTTTATTGCTGGCATTTAATCTGATGCACATAGGCTGTTTCAGATGCAGTTAGTAATTAAATTACACTTTACCGTTTCATTATGCAAACAAACACTAACATAAGTGTTACACAGTATTAACCTTCCAAATTTACAGCCAGGTGAACATTTGAAGGAGTAGGTTGATGGAACTCGCCCACTGAATATAGTCAGGCTGGATCACTTGCACAATTTAAGCCATTTTAAAGGTCGTTATCCAGATTGAGTCACATTCTAAACTCATCTGCCTGCATTGAAATTGGCACTAGTGTGTGTCTAACATCCTCTAGGAATATTATGGGTACAAACATATTATTAATTCCTGGTTTTAAATGGCTCTGACTGTCCTGGAGAGCTTACTGGCAAGTATTACACAAGGTGATTCATCTACTTAGAGTGATTAAACCTATCTTACCTAAGAAATGGACACAGGGACTTGTCAGGGTCAGGCATGTCTAAATGTAATGGAGGATTAAAAACATGGTTGACAAAGGCACTAGGTTTTTTTATTGATGGCAAAAATAACTTTGGCAACATATGGGCTGTAAGATCGATTGTGTTTAAATAGTCTCAAATGATCTGCTTTGGGTTGATTTTCTAATATGATCAGTGGTACAGAATCACTGATGGGatgttagaatttttttttcgtCTTCTGTATTTTACTGCTGAGCAAAAATGCTTCAGTGCCAAAAGGCCTGCtagctggccaggttttcagtAAACCCTCTACATGAAGCCGTCGTGAAGCAGTACAAGCGTACATGCTCTAGAAGATACACCCTCCTTACTGAGAGTCAAGATGTACATTTTGTGTGTCCTGAATGAAGCAATGAGGCATAAAATGTGGTATCCATTGCATCGCACTGTTGAAAGACACAAGGGCAATTCCATGCAAATGCCAACATTACCGTGGAAAAATAAAGTT

Function


symbol description
hcn3 Predicted to enable sodium channel activity and voltage-gated potassium channel activity. Predicted to act upstream of or within potassium ion transport; sodium ion transport; and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human HCN3 (hyperpolarization activated cyclic nucleotide gated potassium channel 3).

NR:

description
potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026928544.2 True 3077 mRNA 0.47 7 12771921 12783866

Neighbor


gene id symbol gene type direction distance location
ndufv1 ndufv1,LOC108437925,LOC103023083,LOC107693353,LOC107589403,LOC107101109 coding downstream 1240 12761712 ~ 12770681 (-)
kmt2ba LOC108272954,LOC107701550 coding downstream 47406 12687762 ~ 12724515 (-)
si:ch211-288g17.3 LOC108273223 coding downstream 122602 12636850 ~ 12649319 (-)
styk1a LOC108273367 coding downstream 289779 12465737 ~ 12482142 (-)
zgc:194578 LOC108273361 coding downstream 309565 12447738 ~ 12462356 (-)
si:ch211-81a5.8 NA coding upstream 6930 12790796 ~ 12793315 (-)
clk2a clk2,LOC108437923,LOC107724099,LOC107599513,LOC107656479,LOC107589405 coding upstream 11865 12795731 ~ 12813429 (-)
setdb1a setdb1,LOC108272679,LOC106574954 coding upstream 32205 12816071 ~ 12835472 (-)
lrrc71 lrrc71 coding upstream 54338 12838204 ~ 12855492 (-)
ash1l LOC108272684,LOC108437921,LOC106588182 coding upstream 76707 12860573 ~ 12899960 (-)
G404719 NA non-coding downstream 85453 12686190 ~ 12686468 (-)
LOC113535190 NA non-coding downstream 94275 12663011 ~ 12677646 (-)
G404692 NA non-coding downstream 136708 12601632 ~ 12635213 (-)
G404687 NA non-coding downstream 180388 12589272 ~ 12591533 (-)
G404682 NA non-coding downstream 193115 12576532 ~ 12578806 (-)
G404799 NA non-coding upstream 33718 12817584 ~ 12942105 (-)
G404818 NA non-coding upstream 130075 12913941 ~ 12923945 (-)
G404896 rprd2 non-coding upstream 199847 12983713 ~ 12984373 (-)
G404900 NA non-coding upstream 208335 12992201 ~ 12993258 (-)
G404904 NA non-coding upstream 215377 12999243 ~ 13002077 (-)
trnav-cac_26 NA other downstream 192270 12579580 ~ 12579651 (-)
trnav-aac_26 NA other downstream 193120 12578729 ~ 12578801 (-)
trnav-cac_25 NA other downstream 194261 12577588 ~ 12577660 (-)
trnav-aac_25 NA other downstream 195117 12576732 ~ 12576804 (-)
trnav-aac_24 NA other downstream 197106 12574740 ~ 12574815 (-)
G404999 NA other upstream 356828 13140694 ~ 13141115 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other upstream 606050 13389916 ~ 13392833 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other upstream 758137 13542003 ~ 13544505 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other upstream 772290 13556156 ~ 13558631 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 975895 13759761 ~ 13761557 (-)

Expression



Co-expression Network