hax1 (hax1)


Basic Information

Item Value
gene id hax1
gene name hax1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13591039 ~ 13599620 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928604.2
GCTAGGCCGCTGGATAGTCGGTTCCTCTACGTCGTCATCACCGCGATCACGTGACGTGACTTGCCGTATTGCATCTTATGGCTGTTCGATGACAGTTCACAAccttttaacaataaatgagTGTATTTGATCTTTTCCGCGGGTTTTTTGGGGTGCCAGGAGGCCGCTACCCTGGCGGTGACCGGAGGGATCCCTTCTTTGATGGGTTGacccatgatgatgatgatgatgatgatgaagtggaGGATAGATTTCATCACGATTCCATGGACAGGTTTGACGATGTGTTCAGATTTGGTTTCAGTTTTGGGCCAAATGGAATGCGCATTCAGGAGCCACAAATGTTTGGCCAAATATTCCGGGACATGGAGGACATATTTGCTGGTTTAGGCCACTTCGGTCGTGattTGCCCAGTATTGAGGCTCCACCTCAGGAGAAACCAGAGGACAGcaacaggagaggaggaagaagtAGGAACTCTCTCAGAGACTTCATGTTGAAGAACCCAGACGATTCTGCCTCTAATTCCCCTTCTGTAGCACCTAGAGACGTGGATCCTTCATCACCTGGTGGCCCAAGTGTACCCAGGAGCCCtttccatcacaggacaccattcTCCAGGtttaagGACATTTGGAGTGATGGACCAAGACAAAGGGAGGACgaaaaaaaagaggatggaGatctAGATTCTCAGGTGTCTTCAGGGGGACTGGACCAAATCTTAACGCCAGCTCCCTCACAGCCAAAAACACGATCCTTCTTTCAGTCTGTAACAGTTACCAAAGTGGTTAAGCCTGATGGGACAGTAGAAGAGAGACGTACAGTCAGGGATGGACAGGGTAATGAAGAGACTACCGTGATCCGCTCAGGAGGCCCTGGTGGTCAGGAAGGTCCACATGATGAGCCTGCTTCTCCCACACTAGGTGGTCCCGGGCCTTTCTCTGACATGCAGGATgagttctccatgttctccaagTTCTTTGGTGGCTTCAGAAGGTGAAAAGTGAGAAGACTAGAAGTGCTTCTGAGGATGAGACACAGGAATAAAGACACTGACCATTACACACTGCTTCAGCACTATTTATcctcattttgcttctttttttcagaactgcttactgacatttattaatcttttaaatactttaaagtcttttgatttggaatgtatataaacataaaaagtatataaatatactatacTTTATGAATGTTCTTGCAGGGGACATGCTGTTTACTGTCCTGAGAAGTTttacaaatgaatattaaagcaactaaaaatga

Function

symbol description
hax1 Predicted to be involved in negative regulation of apoptotic process and regulation of actin filament polymerization. Predicted to be active in several cellular components, including apical plasma membrane; clathrin-coated vesicle; and sarcoplasmic reticulum. Is expressed in several structures, including hatching gland; lens; mesoderm; myotome; and solid lens vesicle. Human ortholog(s) of this gene implicated in severe congenital neutropenia 3. Orthologous to human HAX1 (HCLS1 associated protein X-1).

NR:

description
PREDICTED: HCLS1-associated protein X-1-like

GO: NA

KEGG:

id description
K16220 HAX1; HCLS1-associated protein X-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928604.2 True 1288 mRNA 0.45 7 13591039 13599620

Neighbor

gene id symbol gene type direction distance location
aqp10b LOC108272648,LOC108433769,LOC107599561 coding downstream 4489 13575684 ~ 13586550 (-)
LOC113535306 NA coding downstream 41824 13548417 ~ 13549215 (-)
chrna11 si:ch211-39a7.1,LOC108273254,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611 coding downstream 64939 13489949 ~ 13526100 (-)
trim46b LOC108272350,LOC108437912,LOC107589413,LOC107693334,LOC107750805 coding downstream 147953 13409057 ~ 13443086 (-)
LOC117596411 LOC101068103,LOC105418166,LOC108412963,LOC106522608,LOC105419408,LOC108431938,LOC106674638,LOC108415995 coding downstream 499293 13087487 ~ 13091746 (-)
ubap2l ubap2l,LOC107599491 coding upstream 3707 13603327 ~ 13638125 (-)
tuft1b LOC108272645 coding upstream 46647 13646267 ~ 13678291 (-)
cgnb LOC108272895 coding upstream 89502 13689122 ~ 13726155 (-)
pygo2 LOC108273220,LOC108433763,LOC103036475,LOC107693316,LOC107729895 coding upstream 129507 13729127 ~ 13734761 (-)
s100s s100s,LOC108272970,LOC108433762,LOC103039105,LOC107716593,LOC107670010,LOC107559723 coding upstream 147258 13746878 ~ 13750502 (-)
LOC113535067 NA non-coding downstream 27090 13559889 ~ 13563949 (-)
G405206 LOC108273195,LOC108437913,LOC103394518,LOC103356295 non-coding downstream 136242 13452399 ~ 13454797 (-)
G405144 NA non-coding downstream 224263 13366437 ~ 13366776 (-)
G405032 NA non-coding downstream 372559 13218279 ~ 13218480 (-)
G404997 NA non-coding downstream 450384 13140420 ~ 13140655 (-)
G405353 NA non-coding upstream 1407 13601027 ~ 13605892 (-)
G405368 NA non-coding upstream 55785 13655405 ~ 13706542 (-)
G405386 NA non-coding upstream 135916 13735536 ~ 13735748 (-)
G405419 NA non-coding upstream 208863 13808483 ~ 13814892 (-)
G405420 NA non-coding upstream 216278 13815898 ~ 13872428 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 32408 13556156 ~ 13558631 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other downstream 46534 13542003 ~ 13544505 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other downstream 198206 13389916 ~ 13392833 (-)
G404999 NA other downstream 449924 13140694 ~ 13141115 (-)
trnav-cac_26 NA other downstream 1011388 12579580 ~ 12579651 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 160141 13759761 ~ 13761557 (-)
npy npy other upstream 481752 14081372 ~ 14083846 (-)
G405588 NA other upstream 514999 14114619 ~ 14119658 (-)
tpbga LOC108272337 other upstream 875856 14475476 ~ 14479077 (-)
G405961 NA other upstream 1367856 14967476 ~ 15013988 (-)

Expression


Co-expression Network