LOC113543691 (LOC108272892)


Basic Information

Item Value
gene id LOC113543691
gene name LOC108272892
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11525516 ~ 11529036 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942089.2
GTTGAGAAAGACGACAgggtgtggtgtgtttgtgctaACTGACGCCATGAAGGTGAGGAAGACAGGTGGCCATTTTACTTCCGCAAAGCAGCAAGAACTAACGTCTATCGTCATCCCTGGTTCATCTGTTGTGCATTCATCAAAGTAAGAGTGTGAGAAAATCCTGGGACTACAggtattttggagaaaaaaagacctGGACTACAAAGTTTCTCATACTTTTACTTTGCTGACTGCACAGCTAGATGAACTGGACAGGATGAAGTTcataaatattcctttaaacataaaaaacgAGTGTCACCAAGTTAAATGCGAATTAGCAGGGTCCTACACAGAAGGTGGTTGTGTGGATCTTGATAAAGCTGCCGGTGTTGTTAAAAGTTACTCTGGTGCACTGATTCCCCTCATAAAACCAAAGAGTtacagtgtgagagtgtgtgggcAGGATGGCACAGTCTACGCAGGGAATGAGGATCAGCTAGAAGCCTGGAAAGATTTCTACCTTCCAGAGAGAATGGAGATGGAGGTGATCGGTGCGATTGACGATTTCCCATGTGACGCGTTTGGCCTGCAGTTAGTCCTCTTGCTGTGTGAAGACGGGAACATATATGCTTATGAAGATGAAGTTCTGCACCTTGTAGCCAGAAGTGTACAGGAGCTGTTTGAAACTGGCTTGACCTTTCCCGGATTAGAATGCTACAAGCTAGGGGAATGTTTCGAGGATTGCACAGAGGAAGAATACAACGAAATCATGGAATCTGATGACATCAAGGAAATGAAAGAGGCACACAACAATTTCCGTGAATCTTTGGAGCGTGAACTACTGGAAAGTCTAAAGGAATCCAAAAGCAGTCAATTTAAGggTGTGGAAGAGGGCGTGATCCAGCCCAAGAAGAATTCAGACACAGTGAAAGAGTGTTGGGAGATTGTTGTTTGGAACCATATGCAAATACCTTCATACATAatgataaagtaaaataaagaaagtacagtaatatgtacagtactgtgcaaatgacCACCATTTTGTTTCGAGTCAAATGGCCATTAAGtacttattgttaattatttggtggcaaacaataatgatgggaaagtgtacattattttcattttaagtcAAACAGCCATGCAGTACTTATTTATGCAGGTCAATAATAAAGttcaatattacaaaaaatgcTTAAACATTTCATACTGTTTCTACTGTTAAAAACCTTTatgatttataaacaataaCCGTAATGAACAATGATGGGAAAAAGTGTTtaacagaaaaccacatcatTATTCTAACAATAAGTACTAAATGGCCATTTGATGCAAAATAAACGGTTGATctcagacttttgcacagtactgtatgtatatgtacagtgcattgcataagtattcacccccaccCTTggacttttctcctttttcacccCTGTTGTTGTAAAAACCCTAAATTAGTTGAATGGTGTTTGTTTAACGGTGTGCAATCAAAGTGTCATGTGATAAATATACCTGCTCCTGGAAGGTCCCAGAGTTTGATAGAGAACAATACCTCATCATGAaaaccaaggagctatcaaaacaagtcggGGACATAGTTCTGCAAatgtatcaatcagggtttggtgaTTTAACAAATATCCCAAAtagagcaccattaaatccattattaacaaattgaattatttaactatgaattatttaactatgttctctaacaaactctggggtcTTCCAGGAGCAGGTGTATTttttatactgagatcacatgacacttgcACACAAGTGTAACTATTCAGCTAATTATGTGACATCTGATGGCACCTGATTTAGGGATTTCACATCAGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942089.2 True 1849 mRNA 0.39 6 11525516 11529036

Neighbor

gene id symbol gene type direction distance location
LOC113543737 NA coding downstream 2173 11517930 ~ 11523343 (-)
LOC113543760 grb10a,LOC108273075,LOC108440880,LOC107739542,LOC107667783,LOC107565574,LOC107656633 coding downstream 27257 11448455 ~ 11498259 (-)
trnap-ugg_24 NA coding downstream 83930 11441515 ~ 11441586 (-)
trnaa-ugc_19 NA coding downstream 84781 11440664 ~ 11440735 (-)
LOC113543901 LOC108273294,LOC108413341,LOC107550656,LOC107737765,LOC107700701 coding downstream 95198 11419153 ~ 11430318 (-)
si:ch73-109i22.2 NA coding upstream 12408 11541444 ~ 11552179 (-)
LOC117596452 LOC108273353 coding upstream 194541 11723577 ~ 11732473 (-)
apoea LOC108272669 coding upstream 263184 11792220 ~ 11794417 (-)
LOC113543858 LOC108272670 coding upstream 270460 11799496 ~ 11809781 (-)
trnay-gua_12 NA coding upstream 281347 11810383 ~ 11810470 (-)
G403851 NA non-coding downstream 129476 11395737 ~ 11396040 (-)
LOC117596437 NA non-coding downstream 162560 11327698 ~ 11362956 (-)
LOC117596438 NA non-coding downstream 265125 11256791 ~ 11260391 (-)
G403823 NA non-coding downstream 311678 11211886 ~ 11213838 (-)
G403717 LOC107675819,LOC107719741,LOC107739129,LOC107589765 non-coding downstream 374337 11150807 ~ 11151179 (-)
G403893 NA non-coding upstream 2257 11531293 ~ 11533016 (-)
G403981 tpm3,LOC100305075,LOC107748711,LOC107693397,LOC108440886 non-coding upstream 139727 11668763 ~ 11696191 (-)
G403982 NA non-coding upstream 150219 11679255 ~ 11680996 (-)
G404060 NA non-coding upstream 234075 11763111 ~ 11765767 (-)
G404198 NA non-coding upstream 292014 11821050 ~ 11821426 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 2109263 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 2241023 9227395 ~ 9284493 (-)
G402673 NA other downstream 2364046 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 3607823 7869403 ~ 7917693 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 4248734 7254433 ~ 7276782 (-)
si:ch73-347e22.4 NA other upstream 248333 11777369 ~ 11790179 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 616562 12145598 ~ 12256372 (-)
G404644 NA other upstream 901959 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 986280 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 1041428 12570464 ~ 12570536 (-)

Expression


Co-expression Network