csnk2b (csnk2b,LOC102207154,LOC100710962,LOC101175345,LOC102778826,LOC106573472)


Basic Information

Item Value
gene id csnk2b
gene name csnk2b,LOC102207154,LOC100710962,LOC101175345,LOC102778826,LOC106573472
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 6075576 ~ 6082184 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942101.2
tttCCCAAGTCTGCAGGAGGCGCGTTGTGCGTCAGATTGTGCGTCTGATCGTGCGTCATCACGTTGCTTAAGACGTCACACGCCAGTCAGAGAACGCTTGTATTGCTGCAGTTTAGCGCGGAACCGGGAGTTTCCCCAAAATGAGCAGTTCAGAGGAAGTTTCGTGGATTTCTTGGTTTTGTGGCCTTCGTGGGAATGAGTTCTTCTGTGAGGTGGATGAGGATTACATCCAGGATAAATTCAATCTCACTGGACTGAACGAGCAGGTTCCTCATTACAGACAAGCCCTGGACATGATTTTGGATCTGGAACCAGATGAGGAGCTGGAAGACAACCCGAATCAGAGTGACCTGATTGAACAGGCGGCTGAGATGCTGTACGGCCTGATTCACGCGCGTTACATCCTTACCAACCGTGGCATTGCTCAGATGctGGAGAAATATCAGCAGGGGGACTTCGGCTATTGCCCTCGTGTTTACTGTGAGAACCAGCCTATGCTGCCAATCGGGCTGTCTGATATCCCAGGCGAGGCCATGGTCAAGCTCTACTGTCCTAAATGTATGGATGTGTACACGCCGAAGTCGTCCCGGCACCACCACACCGATGGAGCTTATTTTGGAACCGGGTTCCCCCACATGCTCTTCATGGTGCACCCTGAGTACCGGCCAAAGAGGCCTGCCAACCAGTTTGTGCCCAGGCTCTATGGTTTCAAGATCCACCCGATGGCATACCAGCTGCAGCTGCAGGCAGCCTCCAGCTTCAAGAGCCCTGTCAAGGCCATCCGCTAAATCATGGAAAGAAGGGAAGGGAGGGCTGGAGAGGCGAGGGGGAgaatctgtgtctgtctttacATCACCTCGCTCTTCACCAAGAGACCGCTTTGTTTTATCTTAGATTTGTTTAAGAGAAATGTTTCAACATCAAGAGAGTGGGAATATAGAACACACACATTGGATAATCTATAAACGTttcctcttcacacacacacacacacacacacacacacacacacacacacagcatggtgATGCCATGCTGTCAttggtgttttctttgttaaaaaaaaaaaa
>XM_034301528.1
AGTCAGAGAACGCTTGTATTGCTGCAGTTTAGCGCGGAACCGGGAGGTGAGGCTCATACAGATACAGCTTTAatacctacaaacacacacactttatatacccagtgtgtgtttgaagtgcTTGTGTATCTTGTTTCCCCAAAATGAGCAGTTCAGAGGAAGTTTCGTGGATTTCTTGGTTTTGTGGCCTTCGTGGGAATGAGTTCTTCTGTGAGGTGGATGAGGATTACATCCAGGATAAATTCAATCTCACTGGACTGAACGAGCAGGTTCCTCATTACAGACAAGCCCTGGACATGATTTTGGATCTGGAACCAGATGAGGAGCTGGAAGACAACCCGAATCAGAGTGACCTGATTGAACAGGCGGCTGAGATGCTGTACGGCCTGATTCACGCGCGTTACATCCTTACCAACCGTGGCATTGCTCAGATGctGGAGAAATATCAGCAGGGGGACTTCGGCTATTGCCCTCGTGTTTACTGTGAGAACCAGCCTATGCTGCCAATCGGGCTGTCTGATATCCCAGGCGAGGCCATGGTCAAGCTCTACTGTCCTAAATGTATGGATGTGTACACGCCGAAGTCGTCCCGGCACCACCACACCGATGGAGCTTATTTTGGAACCGGGTTCCCCCACATGCTCTTCATGGTGCACCCTGAGTACCGGCCAAAGAGGCCTGCCAACCAGTTTGTGCCCAGGCTCTATGGTTTCAAGATCCACCCGATGGCATACCAGCTGCAGCTGCAGGCAGCCTCCAGCTTCAAGAGCCCTGTCAAGGCCATCCGCTAAATCATGGAAAGAAGGGAAGGGAGGGCTGGAGAGGCGAGGGGGAgaatctgtgtctgtctttacATCACCTCGCTCTTCACCAAGAGACCGCTTTGTTTTATCTTAGATTTGTTTAAGAGAAATGTTTCAACATCAAGAGAGTGGGAATATAGAACACACACATTGGATAATCTATAAACGTttcctcttcacacacacacacacacacacacacacacacacacacacacagcatggtgATGCCATGCTGTCAttggtgttttctttgttaaaaaaaaaaaa

Function

symbol description
csnk2b Predicted to enable protein kinase regulator activity. Predicted to be involved in regulation of protein serine/threonine phosphatase activity. Predicted to act upstream of or within Wnt signaling pathway and phosphorylation. Predicted to be part of protein kinase CK2 complex. Predicted to be active in cytoplasm. Orthologous to human CSNK2B (casein kinase 2 beta).

NR:

description
PREDICTED: casein kinase II subunit beta isoform X1

GO:

id name namespace
GO:0045859 regulation of protein kinase activity biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0031519 PcG protein complex cellular_component
GO:0005956 protein kinase CK2 complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0019887 protein kinase regulator activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K03115 CSNK2B; casein kinase II subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942101.2 False 1070 mRNA 0.50 7 6075576 6082184
XM_034301528.1 True 1073 mRNA 0.49 7 6075576 6082100

Neighbor

gene id symbol gene type direction distance location
dtnbp1b dtnbp1b,LOC108272579,LOC107754801,LOC107731565,LOC108435503,LOC107568291 coding downstream 229298 5813904 ~ 5846278 (-)
pard6gb LOC108272576 coding downstream 477213 5559980 ~ 5598363 (-)
bloc1s4 LOC108272578 coding downstream 516565 5550378 ~ 5559011 (-)
asns asns,LOC107754811,LOC107731557,LOC107702657,LOC107672863,LOC108410560 coding downstream 525918 5540376 ~ 5549658 (-)
umad1 umad1 coding downstream 632715 5428961 ~ 5442861 (-)
prrc2a prrc2a,LOC103472915,LOC104953786 coding upstream 2725 6084909 ~ 6105333 (-)
neu1 LOC108272741,LOC103030882,LOC108411940,LOC108411932 coding upstream 27089 6109273 ~ 6114435 (-)
LOC113543800 LOC108272740,LOC108411932 coding upstream 35907 6118091 ~ 6124793 (-)
prrt1 prrt1,LOC108272790,LOC107694357,LOC107584308,LOC107595589,LOC107677474 coding upstream 56349 6138533 ~ 6149189 (-)
skiv2l skiv2l,LOC107754802,LOC107677455,LOC107711323,LOC107694354 coding upstream 68668 6150852 ~ 6171006 (-)
G401196 NA non-coding downstream 53811 6021554 ~ 6021765 (-)
G401106 NA non-coding downstream 104402 5907147 ~ 5971174 (-)
G400913 NA non-coding downstream 263564 5811344 ~ 5812012 (-)
G400826 NA non-coding downstream 488195 5583555 ~ 5587381 (-)
G400676 NA non-coding downstream 694639 5371072 ~ 5380937 (-)
G401230 NA non-coding upstream 14795 6096979 ~ 6187263 (-)
G401243 NA non-coding upstream 105789 6187973 ~ 6188409 (-)
G401259 NA non-coding upstream 165272 6247456 ~ 6250036 (-)
G401388 NA non-coding upstream 277570 6359754 ~ 6359977 (-)
G401403 NA non-coding upstream 323122 6405306 ~ 6405878 (-)
G400815 NA other downstream 485829 5587398 ~ 5589747 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 935196 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 1067112 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 1440519 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 1737149 4295216 ~ 4338427 (-)
G401205 nelfe other upstream 90804 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 289433 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 1172249 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 1787219 7869403 ~ 7917693 (-)
G402673 NA other upstream 3061686 9143870 ~ 9161470 (-)

Expression


Co-expression Network