bloc1s4 (LOC108272578)


Basic Information

Item Value
gene id bloc1s4
gene name LOC108272578
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5550378 ~ 5559011 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942103.2
GGAGGGGGGAAGGGGTCGAAGTCACATGATGAATGCGGAAGTAACATCTTAACCTGACTCGGTCTGGTGAAACATCAGCAAAGAAGACTTAACTGCGAATATCATTCCAAAGACACACGGGTAGATCTGTGGAGGCGGATATGGAGCATCGGTTAGGCCGGGCGCCGGTGTTGTCTCCGCTGGAGGAGTCGAGTGAGGAGGTGAGCCGAGACAGCGGGATCGTGTCCCAAAGCGCCAGCACTGTGTCCATGCTGAGCGAGGGCCTGAGCAACGGAAACGTCTCCCAAAGCCCCAGCTTCGGACTTAACGTCTCCCAGAGCCCCAGTTTCGCCGGCAACGGATCTGAAAGTCCCAGTTTCAGCGGTAACGTGCCTCAGAGTCCCAGTCTGGATGGTGCTGCTGCGCAGAGTCCCGTCCATGAGCAGGAGGATGAGCTCCTGAGACAGACTGCGCTTAATTACTCCTCTTATATCCGAGCAGACGCAGGCGAGGAGATCTTATGTCTGGAGAAGAGTCTGGAAGAAATGCTCACTCGAGTGGACGAGTTTGTAGGGATGCTGGACATGATTCGCAATGACACCTCTCAGATCGTGAACATCAGCCTGCCTCAGATTTACAAAAAATCCGAGGACATGAGACAGATTTACAGGAAAATCGATAAGCTGGAGGCTTTTGTGAAGATGGTCGCAGCCAACGTGAGTGTCATGGAGGAGCAAGTAATCGAGGCTGAAGGTGAAGCCCGGACTCTACCTGGTGCTTTCAAAAAGATTTTCCGAACAATGAACGTCTCgggatttttaaatAAACCATCCAGCCCCAAACGAGcagcgcagcagcagcagcagcagcagcagcaggagattCCCTCCGTGTTCAGGACCGCCGATTTCTTCCCCACTCAGCCAGAACCGTGAGAACAGAAAACACGGCAGTGTTGAGCTCACGCCGTTCCCGCCAAAGGTCCGAGCTGCGCGTTGCAGCGAGACGGCAACTCGCCTCTGACAGCAATATCAAAGTGGTACTCGAGAACGCCGATCACAGCCGAGCACTATTTTAGCACACCGTTAGATGGCAGCTAGTTTTATaacaaagtttttgtttttaaaggacTTTTGTTTAAAGTGCCTCTCCTGGAAACATCGCTGTTTTCACTCACACGAACGCAGCAGCATGCTAGCAAACAGGCATGTGTCGAtatcaaatattcatatcaCACTAGTTTCATAAACAATTTCATAAACAGTTTTCTATAACGGCAACTCTGACggtagttccggctgcaaggcaaattacaggtttatattaatgcgctcattctaatgcgttatggtttctatagtaacgacttacACTGAGGCTTGTACAACTGTACAGTATGAAACTCCACATTAAACCTGAAAATCACTGAGCTGTCTCCATCTCCTGGACTTTTGGCTCAACTCCGTgcaggtaggaggagctggatcaggtccgaCTCCACCCCCGGGACATTTCGCTCTGCACTGAGGGTtacttgggaaaaaaaaaaaacagaaaagtggaGTGTTCTCCCATATCACCGTAGCAACAAATCAAATATCATAAGTATTAAGTCTACACTGTAGACGTTTGTACCTCTGTaacaaaacagattaaaaatgaaatccaaTACAAACCTGGCAAATGTTCAACCGACATTTAGTTTCCTTAAATCATAATATTATTTagtgaattattcagtaaccgATGAGAATTTGAACCCCAGGacctgggagtttaaggggttaagtCACATCACCTCTAGTGAAGATATTTTGTTCatactgtgtttatattttatgttttaagtcaaatatgtctgtatattgTACAACTGATTATCGACACATACCTACTAGCAAACACCAGAAAGACTTTCTGAGGTTTTTAATTAAGATTGTGTAAATTTTTATAGTGTTATTTTGATCTTGGTCTTTTTTtgccaggattttttttttttttttttgcactaacaTAACTAACATCACGGTAGCTTGAACGATCTTTATTTCAAGTACGCGTTTAATTAAACACTGTCACTTGCTGTAATTTGATACAAAGCCACGGCTGCTTGTGCTTCTTGTTCATACTGTAAATTTCCACTTGATCCCCTTCAGGCCGCAGGAAAGGAAATCTGTGGTTATTCCTGTTTTGAGTaaataatctcttttttttacgCTTGCACTTATCCTTATGATTATCAGTTAGCTAATTTAATGAATCAATTTGTAAggaatgtacatttatttataataaaaagcaaaatattattgtaaaaaGGACAGATA

Function

NR:

description
biogenesis of lysosome-related organelles complex 1 subunit 4-like

GO: NA

KEGG:

id description
K08366 BLOC1S4, CNO; biogenesis of lysosome-related organelles complex 1 subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942103.2 True 2306 mRNA 0.44 5 5550378 5559011

Neighbor

gene id symbol gene type direction distance location
asns asns,LOC107754811,LOC107731557,LOC107702657,LOC107672863,LOC108410560 coding downstream 720 5540376 ~ 5549658 (-)
umad1 umad1 coding downstream 107517 5428961 ~ 5442861 (-)
glcci1a glcci1,LOC108414387,LOC107672859 coding downstream 122775 5391522 ~ 5427603 (-)
rims3 rims3,LOC107672861,LOC107702460,LOC107598211,LOC107731575,LOC107571463 coding downstream 168952 5319003 ~ 5381426 (-)
ptp4a3a ptp4a3,LOC108272580,LOC107702466,LOC107571462,LOC107738588,LOC107598212,LOC105902033,LOC107731571,LOC103031245 coding downstream 232534 5289830 ~ 5317844 (-)
pard6gb LOC108272576 coding upstream 969 5559980 ~ 5598363 (-)
dtnbp1b dtnbp1b,LOC108272579,LOC107754801,LOC107731565,LOC108435503,LOC107568291 coding upstream 254893 5813904 ~ 5846278 (-)
csnk2b csnk2b,LOC102207154,LOC100710962,LOC101175345,LOC102778826,LOC106573472 coding upstream 516565 6075576 ~ 6082184 (-)
prrc2a prrc2a,LOC103472915,LOC104953786 coding upstream 525898 6084909 ~ 6105333 (-)
neu1 LOC108272741,LOC103030882,LOC108411940,LOC108411932 coding upstream 550262 6109273 ~ 6114435 (-)
G400676 NA non-coding downstream 169441 5371072 ~ 5380937 (-)
G400622 NA non-coding downstream 271064 5278903 ~ 5279314 (-)
LOC113543905 NA non-coding downstream 308326 5240099 ~ 5242052 (-)
G400501 LOC108272940 non-coding downstream 514456 5030859 ~ 5035922 (-)
G400517 LOC108273316 non-coding downstream 537583 5012187 ~ 5012795 (-)
G400826 NA non-coding upstream 24544 5583555 ~ 5587381 (-)
G400913 NA non-coding upstream 252333 5811344 ~ 5812012 (-)
G401106 NA non-coding upstream 348136 5907147 ~ 5971174 (-)
G401196 NA non-coding upstream 462543 6021554 ~ 6021765 (-)
G401230 NA non-coding upstream 537968 6096979 ~ 6187263 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 409998 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 541914 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 915321 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 1211951 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 1390628 4150899 ~ 4159750 (-)
G400815 NA other upstream 28387 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 613977 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 812606 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 1695422 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 2310392 7869403 ~ 7917693 (-)

Expression


Co-expression Network