syt11a (LOC108272614)


Basic Information

Item Value
gene id syt11a
gene name LOC108272614
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4857220 ~ 4877644 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942104.2
CTGGACCAGAGCGGAGACAGGCGGCTGCGCGTGCGCGTTCCCATGCGCGTTCCCGTGCGCGTCCTCGAGCAGCGCGCGTCCTGGGGAAACAGAGCGCTCGCGGTGCGGGAGTGCGCTCAGTCAGGCTCATCCAGCATCCAAAtcaaaacataataaatactACAGCATAAATATATTCATGGACGTGAACTAGGGAGCgggattagtttttttttcttttttttatcctttactttttatttatttgttttggatttgctgAACGCAGTCTTCTAAAATGGCTGAGATAGCGAGTCTGAGCCCTACCTACGAGGTGTCCCCAGTCTTGGCGGGATTTCTTGGTGCGGGTGTTCTGGTCGTCACGGTGACGGTGGCCATCTTCCTATGGACGTGCTGCCAGCGTCAGTATCGCAGAATGACGTTTAAGTTAAGCAACGGCCCGTTTGACTCTCCCACCGACCCACCGTTAAAGTTCATCCACATGCTCAAGGGCATCAGCATCTACCCCGAGACCCTCAGCAACGCCAACAAGATCATACGAGTGGGCCGGAGGTCATCCTCACGGCAACGAAGTAACGATTCTGACGTTGAGGGTCATGCGCATTTGCAAATGAACCACCTGGTACCCCCAAAGTTGGAGCGAGCGCTGCCAATCCGGGCCGATTACTGCTGTTCCGAGAGCAGCAGCTGCGAATCGGCCAGTAAGACCCCGACTCCATTCAGCCTCGACTCGCCCTCATTAGGCACCCTAGATCTCGCCATTGACTACAACTTCCCCAAAAAGGCGCTGGTGGTGACGATTGTAGGTGCACGAGGTCTCCCAGCCATTAATGAGCAGATGGGCAGCTCAGACCCCTATGTGAAGATGAGCATCCTGCCCGAGAAGAAGCACCATGTAAAGACCCGTGTGATGAGGAAGACCCTGGAGCCATCGTTCGACGAGACGTTCACCTTCTATGGTGTTTCCTTCAGCGCACTGGCTGACCTTACACTGCATTTCCTGGTGCTGAGCTTCGACCGCTTTGCCCGTGATGACGTAATCGGAGAAGCATTGGTGTCGCTGTCGGGCGTCGAGCTTAGCGCAGGCAAAGTGCACATCAGCCAGCAGATCACCAAGAGGAACGTACAGTGCGGGAGACGTGGTGAGCTGCTGGTGTCTCTGTCCTACCATCCAGCCACACACAGACTGAACGTAGTGGTGCTCAAAGCCAAACATCTTCCTACCATGGACATCACCAGCCTGCCAGGCAACCCGTACGTGAAGGTAAACGTGTTCTACGGCCGCAGACGCATCGCCAAGAAGAAGACGCACGTGAAGAAGTGCACACTGGAGCCTGTCTTTAACGAGTCGTTCGTTTACGACGTGCCCGCAGAGCTCATGGCCGACATCTCTGTCGAGTTCCTGCTCATCGACTTCGACCGCACCACCAAGAACGCCGTCGTGGGCCGTCTGGTGCTGGGGGGTCAGAGCCCGACGCCGTCTGGCGTCACACACTGGAGGGAAGTGTGCGACAACCCGCGGCGGCAGATCGCCAAGTGGCACAACCTGTCCGAGTTCTAACAGTCTACATCACTTTCCCTTGATCCCTTGACGATAAAGATAGCAACCCATCTGTTACCCTTCTCTCATGTAGGTGTATcctagcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggctgtccGGAAGCGGCCTGAAGACCGTAATTGGGCCCTGCCGTTACACAAGGCATGATTTTACTTGAACAGCGCCTGCGGTTCATTCGACAGGAGGCTGCCTATGTAGGCTCCATTTTCCTGCAGCGCATGTGCTCCTATTTGGAAGATAGACTTGAGGACTGCTGTCTACCAAGGTCCCTTATTTTGGACAATTGAAGAAAAACATGGCAGACTAATTCAATCTGTCTCTCCGATAAAATATTATGATCGCACCATAACCTGTGATAAAACGTAAAGCAGTTATTACGAATAATTATTATGATCTAAAAGCCTACTTTGGCGAAGATTTGGAAGAATCACAAAGGACGTCCTCTAATTAAATGAATTCggctttgcaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K19904 SYT4; synaptotagmin-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942104.2 True 2085 mRNA 0.52 4 4857220 4877644

Neighbor

gene id symbol gene type direction distance location
rit1 rit1,LOC107563922,LOC105906336,LOC107676106 coding downstream 6652 4840903 ~ 4850568 (-)
pex11b pex11b coding downstream 17432 4836850 ~ 4839788 (-)
sema4ab LOC108272624 coding downstream 109382 4709738 ~ 4747838 (-)
si:dkey-81h8.1 LOC108272626,LOC103028165,LOC107702549,LOC107672832,LOC107710627,LOC108442974 coding downstream 150787 4694466 ~ 4706433 (-)
si:dkeyp-92c9.4 NA coding downstream 165851 4667787 ~ 4691369 (-)
si:dkey-222b8.1 si:dkey-222b8.1,LOC108273360,LOC108441801,LOC107672874,LOC107698642,LOC103033551,LOC107550085,LOC107748351,LOC105906332 coding upstream 6954 4884598 ~ 4905395 (-)
snapin snapin,LOC106569889 coding upstream 30882 4908526 ~ 4910977 (-)
eepd1 eepd1 coding upstream 50834 4928478 ~ 4954246 (-)
eya3 eya3 coding upstream 162642 5040286 ~ 5052042 (-)
si:ch211-195b13.1 si:ch211-195b13.1,LOC108273319,LOC103036792,LOC108411161,LOC105892152,LOC104955017 coding upstream 176121 5053765 ~ 5059583 (-)
G400494 NA non-coding downstream 23237 4833754 ~ 4833983 (-)
LOC113543895 NA non-coding downstream 39925 4812661 ~ 4817295 (-)
G400477 NA non-coding downstream 71563 4779611 ~ 4785657 (-)
G400432 NA non-coding downstream 293856 4562211 ~ 4563364 (-)
G400431 txnip,LOC107702541,LOC107731569,LOC108273074,LOC105012721,LOC105901470 non-coding downstream 295200 4558488 ~ 4562020 (-)
G400503 NA non-coding upstream 4062 4881706 ~ 4884003 (-)
G400500 NA non-coding upstream 33706 4911350 ~ 4918883 (-)
G400517 LOC108273316 non-coding upstream 134543 5012187 ~ 5012795 (-)
G400501 LOC108272940 non-coding upstream 153215 5030859 ~ 5035922 (-)
LOC113543905 NA non-coding upstream 362455 5240099 ~ 5242052 (-)
polr3gla LOC108272317,LOC108415116 other downstream 222163 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 518793 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 697470 4150899 ~ 4159750 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 724298 4120397 ~ 4132922 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 1622896 3224065 ~ 3234324 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 83458 4961102 ~ 5008464 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 250591 5128235 ~ 5140380 (-)
G400815 NA other upstream 709754 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 1295344 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 1493973 6371617 ~ 6374500 (-)

Expression


Co-expression Network