srfbp1 (srfbp1)


Basic Information

Item Value
gene id srfbp1
gene name srfbp1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 7207545 ~ 7213295 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942106.2
TTTTATCCAACGTGTCCGCGGACGTGATGGCGTCATCTAACCACGCCTTCTCTTACGTCCAGGATCATGGCGGCGCCCTACGCGAGAGACTTCCATGCGTAAATGTAATGCTTGTAGTTTTAAAGTGATCCGCATAAAGACAGGAGAAAGATGCCAGCTGCACTAAACCTCAGCAATGAGGTGGTGAAGATGAGAGCcgaggtgaagcaggtgaaggtGCTCATCATTCGCAAACTCACTCGCCAGATCATGgctctgaagaagaagaaagggactGAAGCCGAcctggagaggaaccagagGAGAGCGGCAAGGTTGCTCGAGGAGATCCATGAACTGAAGGCACTCGCACCAGACAGCGTTACCAAGGCTGCCCTGCAGAGTGACATCAGCTTTGAGAAAGTGTGCCAGAGTAAAGACTCCAGCCTTTCAGAACGCGCCACAGCCCGCATTGCCACacaccccgagttcagcaagaaAATACAGAGCATCAAAAATGCCGTAGAAGCCTTTAAAGCAGAGAGGATAAGTGCTGAGAGAgctgaaaagaagaaagataaaaaaaatctagagaCGGACCAACAAGAGAGAGAATCAAAACTAGATAGTGATGACGAAGAGGGCTcagaggaagatgatgatgatgatgatgatgatgatggcgatgatgatgatggcgatgatgatgatatcgatgatgatggcgatgatgatagcgatgatgatggtggtggtggttccTCTCAAAAGGTCCAGAAAGCAGATGAAGATAAATTAAAGGAACCAACAAAGCAGAATAAGGACTCAGTCACAGCAAAAGAGagCTCCTCCGAAACAGGCAGCACTCCAGCTGAGGTGGTGAGGATGAGGAAGGAGGTGAAGAAACTCCGGGTGCTGATTATCCGGAATCTCACTCAGCAGATCACCAGTCTCAAGAAGGCAAAAGCTGACGAGTCTGAGCTCAAAGGGAACATGGAAGGGGTGGCACGGCTGCAAAAAGAAGTGCAGGTTTTGAGGACACTTCTACCCGACCACGTTACCACCAGAGCCCTCGAGGGGAGCATTGATATGGAGAAAGTGTTCCAGGATCCAGAATCTAGTGTGATAGAGAGAGCGACGGCACGGATCTCCACACACCCACGCTTCGTGAAGAAGCTTCAAGATGTCCGACAAGCCATTGAAGAGGAGAAGATAAAAGCTGAAAAGGCTGGAGAAAAGAATAAGGATGTTAGTGAGGTGATGAAGGCTGAagatagtgatgatgaggttGAAGAAGAGGAGGTAGCTAGTGATGacagcgatgatgatgatgatgatgatgatgatgaggaggaggaggaggaggaggagaaagaggaggagaaagtaAAGGAGACACATCCGACCCTGAAGGTAATTCCAAGGTCTAATGTTGGAAAGCCACCAGAGGACACCAAGTTGGCTTCTACGAAAGAGAAATCAAAAGGAGTAGAGCTGGAAAAAGCTGCGAGAAGTCCTGCAAATCCGAAATCTAGCTCCAAACCAGCTGTCAAAGCGGTCCAGAGTCTGCCATCCAAGAGCAAAGAAGCAGCACCACCACTGAAACAAGTCTCCAAACCTGACACCAAGCAACCAGGAACCAGAAAGGACAAAGAAGAGTCGGATTTGTCTGATTCTGATGAAGAGAAAGAGTATTTCGACGACAGCACTGAAGAACGTTTCCACAAGCAGTCTTCTTATTCAGAGCAGAGCGATGACGATGACTTCTTCCTCGGCAAAGTGAGcaagctgaagaagaagaaaagcgaCACTGCACCCAGAAAGGAGAAAACAAACGATCCTAACAAGGCTCGAGAGAAAGAAGCTAGCGAGACACCTCAGTTCAAAATGCAGTCAGTCTTCTGCTCCACTCTGTCCAAATCCAGCAGTTCCTCTCAGAAGGGTAAACACAGTGGTCCAAATCCACCACGTTTCCAGAACCAGAAACGTTCACAAGGTGACGAGCAACCATCATGGGTTAAAAGCCAAGGTTCTGGAAGGGAAAAAAGGCTTCCAGGATTTAAAAATCAGATGCCTGGATCCAGAGAGAGTTCAAAGCAGAAAGGTCCAGGAGGAGATAAAACTGGTAAACCTGCATTTGAGCGGAAAAACACTCCGGTTAATAAAGCAGCGAGGCATTCCCAGCAGGCCCTGCATCCGTCATGGGAAGCCAGCAGGAAGAGGAAGGAGCAGCAGGCTCAGATCACAGCCTTCCAAGGGAAAAAGATcaaatttgatgatgatgattaacaTCTCTCAGGACCATTCTTTATTTGTTAAGACATTTACACTGATTTCCACAGTGTCAGAGACGATATTTGTCTTACTCTATGTTTCAAATCAAggttccttcattcattcattcatgttgaCATGTTAGGATGGTTTAAGACCTTTTCATAGCTGTATGTATAAAtcctgaataaaatgtaaatatgtgttttCA

Function

symbol description
srfbp1 Predicted to be involved in maturation of SSU-rRNA. Predicted to be part of 90S preribosome. Predicted to be active in nucleus. Orthologous to human SRFBP1 (serum response factor binding protein 1).

NR:

description
serum response factor-binding protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942106.2 True 2464 mRNA 0.47 4 7207545 7213295

Neighbor

gene id symbol gene type direction distance location
e2f3 LOC108272398 coding downstream 2481 7198361 ~ 7205064 (-)
sox4a sox4,LOC108273322,LOC106925895 coding downstream 227255 6979059 ~ 6980290 (-)
nrsn1l LOC108272414 coding downstream 426622 6775979 ~ 6780923 (-)
ndufs6 ndufs6 coding downstream 462083 6742722 ~ 6745462 (-)
irx1b irx1 coding downstream 524050 6679309 ~ 6683495 (-)
eif3i eif3i,LOC107691510,LOC107709286 coding upstream 240443 7453738 ~ 7464458 (-)
txlna txlna,LOC108433836,LOC107687085,LOC107562872,LOC107576061 coding upstream 253750 7467045 ~ 7476978 (-)
kpna6 kpna6,LOC107584279,LOC107745716,LOC107562870 coding upstream 268530 7481825 ~ 7501213 (-)
khdrbs1b khdrbs1,LOC103045134,LOC103472039,LOC106924560,LOC106945640 coding upstream 531529 7744824 ~ 7756061 (-)
agr2 agr2,LOC108273355,LOC108433813,LOC107584355,LOC107745729,LOC107687097,LOC107562756 coding upstream 568620 7781915 ~ 7784061 (-)
G401577 NA non-coding downstream 226970 6920630 ~ 6980575 (-)
G401558 NA non-coding downstream 437811 6769532 ~ 6769734 (-)
G401531 NA non-coding downstream 458313 6748993 ~ 6749232 (-)
G401526 NA non-coding downstream 465271 6742057 ~ 6742274 (-)
G401491 NA non-coding downstream 612605 6594708 ~ 6594940 (-)
G401690 NA non-coding upstream 35029 7248324 ~ 7248560 (-)
G401691 NA non-coding upstream 35653 7248948 ~ 7250340 (-)
G401742 NA non-coding upstream 220492 7433787 ~ 7436406 (-)
G401758 NA non-coding upstream 354238 7567533 ~ 7567747 (-)
G401815 NA non-coding upstream 494567 7707862 ~ 7708191 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other downstream 833045 6371617 ~ 6374500 (-)
G401205 nelfe other downstream 1032285 6172988 ~ 6175260 (-)
G400815 NA other downstream 1617798 5587398 ~ 5589747 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 2067165 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 2199081 4961102 ~ 5008464 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 41138 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 656108 7869403 ~ 7917693 (-)
G402673 NA other upstream 1930575 9143870 ~ 9161470 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other upstream 2014100 9227395 ~ 9284493 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other upstream 2173700 9386995 ~ 9416253 (-)

Expression


Co-expression Network