apoea (LOC108272669)


Basic Information

Item Value
gene id apoea
gene name LOC108272669
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11792220 ~ 11794417 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942107.2
CCAAGCTATATAAATTCCAGCCCATTCCAAAGGCTTGCTGCAGTGATTCGATCCACGGCCAAAGAACAAAAGTCACTAGTGGTGTGCTGTCTGAGGAATAATCATGAAATTGGTTGCTGTAATCTTTGCCCTTTCAGTCATCTCAGGCTGCCAGGGAAGGTTCCTGTTTCAGGATGAACCTAAAACCCATTGGGAGGAGATGGTGGATAAGTTCTGGGAGTATGTAAACAGTGTGAGCTCCAAGGCTGAAGATATGAGGAAGAGCATACAGGCCACCCAACTTGGAAGAGAGCTTGACACACTGATCAGTGACAGCATGGCCGAGCTGCAGATGTACACTGATGATGTGAAGTCGAAGTTGGCACCCTACGCTGAGCAGACTGCTCAAAGAGTGCACGATGATCTTCAGCTGCTGTCAGATAAGCTACGTGTACATATGGAGGAGGCAAAGGATCGCATTACAGAATACAGCCAGGAGCTCCAGACCATGGTCGACCAGAACGCAGATGAGGTCAAGAACAGAATCAATGCATACATCCGTAAACTGAAGAAACGCCTCAACAAGGACACGCAGGAGATCAAAAAGAAAATAGAAACATACTTCGAGGAAGTCCAAGCTCGTGCTACTCAGCATGCGGATGACATGAATGAGCGCCTGATGTCTTACTTTGACGTAGTACGCCAAAATGCTGAGGACAAGTTTAACACCCTTAAAGATTTGCTGAATGACCAAGCTGAAAAAGTGATGGAGAAAtgggagaaaatgaaagagcAGGCTGAGGAGATCAAAAGCAATCTGTACACCCCATTCCAGAAGAAAATGGAGGAGCTTAAAAACTGGTTTGAGCAATTCTTAAATTGAGGAGCTAGAGACCATCActaaaaggtttaaaccacacACCTAAGACCTAACAAGCTGGAAATGTTGATAGAAAGTTGGCATTATGCTCAGGTTATGCAAAAAATACTTAGGCCTACCACTGTATTTTAGCAGAAATCTAATGGATGTTTATTGGAGCTGTTGTGACTGTTTATTCAGTACtaaagtaaaattattaaatacttCAAGAGCAGTTAAACCTTTTGGTTTGCTTATACCGCTTAAATCATTGGCCTCAGTATTGGTTCTACAGAAGAATGTCGATGACTTTCCAAAGAATCTCAGGTCTAAGCTGTGCTATAAAACTACAATATGACGCAAAGGGATAAAGCTACTATAACAAGTAATGGTGAGACCATAAAATGTTGTAAGCAAGTCACTGACAAGGTTGTTAATCTTGAAAATGTGTAGTAACATAAGTAATGATATGTTGTAAGCAGATAGTTATCAGTTTCATTTGCCAATTTTCAATAAAGTAAGAAACAATGCTGTGCaa

Function

NR:

description
PREDICTED: apolipoprotein E

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K04524 APOE; apolipoprotein E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942107.2 True 1376 mRNA 0.41 5 11792220 11794417

Neighbor

gene id symbol gene type direction distance location
LOC117596452 LOC108273353 coding downstream 59747 11723577 ~ 11732473 (-)
si:ch73-109i22.2 NA coding downstream 240041 11541444 ~ 11552179 (-)
LOC113543691 LOC108272892 coding downstream 263184 11525516 ~ 11529036 (-)
LOC113543737 NA coding downstream 268877 11517930 ~ 11523343 (-)
LOC113543760 grb10a,LOC108273075,LOC108440880,LOC107739542,LOC107667783,LOC107565574,LOC107656633 coding downstream 293961 11448455 ~ 11498259 (-)
LOC113543858 LOC108272670 coding upstream 5079 11799496 ~ 11809781 (-)
trnay-gua_12 NA coding upstream 15966 11810383 ~ 11810470 (-)
trnay-gua_13 NA coding upstream 17460 11811877 ~ 11811964 (-)
trnay-gua_14 NA coding upstream 18951 11813368 ~ 11813455 (-)
trnay-gua_15 NA coding upstream 20468 11814885 ~ 11814972 (-)
G404060 NA non-coding downstream 26453 11763111 ~ 11765767 (-)
G403981 tpm3,LOC100305075,LOC107748711,LOC107693397,LOC108440886 non-coding downstream 96029 11668763 ~ 11696191 (-)
G403982 NA non-coding downstream 111224 11679255 ~ 11680996 (-)
G403893 NA non-coding downstream 259204 11531293 ~ 11533016 (-)
G403851 NA non-coding downstream 396180 11395737 ~ 11396040 (-)
G404198 NA non-coding upstream 26633 11821050 ~ 11821426 (-)
G404235 NA non-coding upstream 176325 11970742 ~ 11970964 (-)
G404241 NA non-coding upstream 202653 11997070 ~ 11997470 (-)
G404243 NA non-coding upstream 205849 12000266 ~ 12000510 (-)
G404282 NA non-coding upstream 331040 12125457 ~ 12125840 (-)
si:ch73-347e22.4 NA other downstream 2041 11777369 ~ 11790179 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 2375967 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 2507727 9227395 ~ 9284493 (-)
G402673 NA other downstream 2630750 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 3874527 7869403 ~ 7917693 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 351181 12145598 ~ 12256372 (-)
G404644 NA other upstream 636578 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 720899 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 776047 12570464 ~ 12570536 (-)
trnav-cac_23 NA other upstream 777176 12571593 ~ 12571666 (-)

Expression


Co-expression Network