snapin (snapin,LOC106569889)


Basic Information

Item Value
gene id snapin
gene name snapin,LOC106569889
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4908526 ~ 4910977 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942109.2
TCATAGACAAGCCACAAGACGCAGGCAAGATGGCGGCGCTTGCAGTTGTAGAAACTCCGTCAGGAAAAGATGCCATTGCAGAAGGGCTGATGGATTTGTTAAAACCAGCAGTACAGCAGCTTGATCTACATGTGCATGCAGTGAGGGAGAGTCAAGTGGAGCTCCGAGAGCACATTGACAACTTGGCAACTGAGCTGTGTAGAATTAACGAACACCAGAAAGTCGCCCTGGACTTGGATCCTTATGTGAAGAAACTGCTCAATGCCAGGCGCAGAGTGGTTCTGGTCAATAACATCCTACAGAATGCACAAGAACGCTTACGGAGGTTGAACCATAACGTGGCGAAGGAGACGGCGCGCCGGAAAACCATGCTTGAAACCTCCGGAGCGTTTTCCACTCGATCTCCTAGCAAGCCGTGATGAGTGGCAGCTCAAGAAAGGACACTGCACAATGAAGAAACTGTGCACCATTCCAGGAAATGTTCCTGTGTATAATCAGAGACGCAGTGGACTATGCACAGGATTGGCTGATGCACAGCCCTGAGGCTTGTATTCACTTCAAGGCAGCCAAAGAGCCTGCTGTGTACcgagagctgttttttttttaatgcgttTGCACAAGAAAATCACAAGTTAATATGCGTAATGATTAATATCAGTGATTGTGATTAGTGATTAATAATGATTGCCTTTGATATGCACCTGGCTTTAACTTTCTTGATACATGTATGTCACATAGTACAGCTGTTTGTACTTTCAGATGCCAAAAAGCATGCTCGTATGTAACAGAATTGGTACGCCATTATTCATCAACTAAGCAGTAGAAAGCTTCCTAACCTCAAGTAATCATTTTGTAAACCAATAGCCAAGGttactagcaagctagcttaCATTAGGCTGTTTTTATATAATCAAACAATTATGCAGATATGCTGGCAAGCTAGCTTACATTAGGCTAACTACTATTGTGCTATTGCGTAATCCAGTTGTCGTGTTTGCTAGAGAGAGCGAGCTACTTTGCAAAGACTGCATTGAGTGTAGAGTACATTCCTGTTTATATTGTTTAGATAGAGTGCAGACATCAGCATGCTGAGTTTTAGGAGCTGTGTGAAACTTTGTCCAGGTGTAAAGAAGCTTGCAAAGCCTACACTTCATGTGTTCATTAATGGTGTTACTAAAacagcagccattttaagaaatgTGGAACTGTACACTGTTACAAACaatacgtaaggaataaaacactcagggtcGTGCTGTTACTGTTACCCTGCTGATTTTTCATATAAtggcacatcctgaagtgtttttttcctcttagaccacagaaatttgccaacaattattattttttatttattaaagaatgagatGTCTTACTATTTGTCCTTTTGTAGCTCTGATTAGTTTCTAtaaagcagctataagcagt

Function

symbol description
snapin Predicted to enable SNARE binding activity. Predicted to be involved in several processes, including endosome to lysosome transport; regulation of synaptic vesicle exocytosis; and synaptic vesicle exocytosis. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in synaptic vesicle membrane. Predicted to be part of BLOC-1 complex and BORC complex. Predicted to be active in synaptic vesicle. Orthologous to human SNAPIN (SNAP associated protein).

NR:

description
PREDICTED: SNARE-associated protein Snapin

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0031083 BLOC-1 complex cellular_component

KEGG:

id description
K20002 SNAPIN, BLOC1S7; SNARE-associated protein Snapin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942109.2 True 1431 mRNA 0.42 4 4908526 4910977

Neighbor

gene id symbol gene type direction distance location
si:dkey-222b8.1 si:dkey-222b8.1,LOC108273360,LOC108441801,LOC107672874,LOC107698642,LOC103033551,LOC107550085,LOC107748351,LOC105906332 coding downstream 3131 4884598 ~ 4905395 (-)
syt11a LOC108272614 coding downstream 30882 4857220 ~ 4877644 (-)
rit1 rit1,LOC107563922,LOC105906336,LOC107676106 coding downstream 57958 4840903 ~ 4850568 (-)
pex11b pex11b coding downstream 68738 4836850 ~ 4839788 (-)
sema4ab LOC108272624 coding downstream 160688 4709738 ~ 4747838 (-)
eepd1 eepd1 coding upstream 17501 4928478 ~ 4954246 (-)
eya3 eya3 coding upstream 129309 5040286 ~ 5052042 (-)
si:ch211-195b13.1 si:ch211-195b13.1,LOC108273319,LOC103036792,LOC108411161,LOC105892152,LOC104955017 coding upstream 142788 5053765 ~ 5059583 (-)
LOC117596451 LOC108261350,LOC108261581 coding upstream 209293 5120270 ~ 5127437 (-)
LOC117596409 NA coding upstream 240111 5151088 ~ 5152608 (-)
G400503 NA non-coding downstream 24523 4881706 ~ 4884003 (-)
G400494 NA non-coding downstream 74543 4833754 ~ 4833983 (-)
LOC113543895 NA non-coding downstream 91231 4812661 ~ 4817295 (-)
G400477 NA non-coding downstream 122869 4779611 ~ 4785657 (-)
G400432 NA non-coding downstream 345162 4562211 ~ 4563364 (-)
G400500 NA non-coding upstream 373 4911350 ~ 4918883 (-)
G400517 LOC108273316 non-coding upstream 101210 5012187 ~ 5012795 (-)
G400501 LOC108272940 non-coding upstream 119882 5030859 ~ 5035922 (-)
LOC113543905 NA non-coding upstream 329122 5240099 ~ 5242052 (-)
G400622 NA non-coding upstream 367926 5278903 ~ 5279314 (-)
polr3gla LOC108272317,LOC108415116 other downstream 273469 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 570099 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 748776 4150899 ~ 4159750 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 775604 4120397 ~ 4132922 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 1674202 3224065 ~ 3234324 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 50125 4961102 ~ 5008464 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 217258 5128235 ~ 5140380 (-)
G400815 NA other upstream 676421 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 1262011 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 1460640 6371617 ~ 6374500 (-)

Expression


Co-expression Network