eif3i (eif3i,LOC107691510,LOC107709286)


Basic Information

Item Value
gene id eif3i
gene name eif3i,LOC107691510,LOC107709286
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 7453738 ~ 7464458 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942118.2
GAAGAACAGGAAGTAAGAAATTCCCTTTTCCGCTTTAACCCGGCGCTTAACAGCACGCGCATGGAGTATTGATATAACTTCTCTGGGCTAATAAAAGGATCTTTATCAAGAAGATACAGAGTGAGCAAGATTAGTGAACATGAAACCCATCCTTCTGCAGGGCCATGAAAGGTCCATCACTCAGATCAAATACAACAGAGAGGGTGACCTGCTGTTCTCCGTGGCCAAGGACCAGTTTGTCAACGTGTGGTACTCCGTCAACGGGGAGCGGCTCGGCACTTACAACGGCCACACCGgagctgtgtggtgtgtggatGTCGACTGGGACACAAAGCACGTGTTGACTGGATCTGCTGATAACAGCTGCAGACTCTGGGACTGTGAGACGGGTAAACAGCTCGCCGTGCTCGATACCAACTCAGCAGTGAGGACGTGTGGCTTCGACTTCACCGGGAACATCATCATGTTCTCCACGGACAAACAGATGGGCTACCAGTGCTACCTGAACTTCTTTGACCTGCGAGACCCCCAACAGATCGAGGACAACCAGTCGTATCTGTCAGTGCCATGCAGCGAGTCAAAGATCACGAGTGCGGTGTGGGGGCCGCTGGGAGAGTTTGTGATCGCAGGACACGAAAATGGAGAAATCAACCAGTTTAGCGCCAAGtctggGGATATCCTGACTACTGTGAAGGAGCACACTAAGCAAATCAACGACATCCAGACGTCTGTAGACCTCACAATGGTCATCACAGCCTCTAAAGACTGCGCTGCCAAGCTGTTTGATTCGACCTCGCTAGAACACATTAAAACCTTCAAGACCGAGCGACCCGTGAACTCTGCTGCCATCTCGCCCATCATGGACCACGTGGTCATGGGAGGAGGTCAGGAAGCCATGGAGGTCACAACCACTTCCACTAGGATTGGCAAATTTGAAGCCAGGTTTTTCCACGCAGCCTATGAAGAGGAGTTTGGAAGAGTGAAGGGTCACTTCGGCCCCATCAACTGTGTAGCATTCCACCCAGATGGCAAAAGTTACAGCAGCGGAGGTGAGGACGGCTACGTCAGAATTCACTACTTCGATCCTCAGTACTTCGACTTTGAGCTCGAGGCCTAAAATCAGAAATCATTCCTGTTTTAACATCAGCTCATCAGCCAGCATCATCATGGGTTCATCAGTCAGAGATACAGCCTGTTTTTTACACTCAGCTTTAAAGACTGTGCATATGATGGCTGGAATGTTCCTGagtatttaataaatcatattcTCAATAAACTGTTTGACATACAAAA

Function

symbol description
eif3i Predicted to enable translation initiation factor activity. Acts upstream of or within liver development and sprouting angiogenesis. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex, eIF3m. Is expressed in several structures, including digestive system; endothelial cell; nervous system; otic vesicle; and pectoral fin. Orthologous to human EIF3I (eukaryotic translation initiation factor 3 subunit I).

NR:

description
eukaryotic translation initiation factor 3 subunit I

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03246 EIF3I; translation initiation factor 3 subunit I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942118.2 True 1293 mRNA 0.49 11 7453738 7464458

Neighbor

gene id symbol gene type direction distance location
srfbp1 srfbp1 coding downstream 240443 7207545 ~ 7213295 (-)
e2f3 LOC108272398 coding downstream 248674 7198361 ~ 7205064 (-)
sox4a sox4,LOC108273322,LOC106925895 coding downstream 473448 6979059 ~ 6980290 (-)
nrsn1l LOC108272414 coding downstream 672815 6775979 ~ 6780923 (-)
ndufs6 ndufs6 coding downstream 708276 6742722 ~ 6745462 (-)
txlna txlna,LOC108433836,LOC107687085,LOC107562872,LOC107576061 coding upstream 2587 7467045 ~ 7476978 (-)
kpna6 kpna6,LOC107584279,LOC107745716,LOC107562870 coding upstream 17367 7481825 ~ 7501213 (-)
khdrbs1b khdrbs1,LOC103045134,LOC103472039,LOC106924560,LOC106945640 coding upstream 280366 7744824 ~ 7756061 (-)
agr2 agr2,LOC108273355,LOC108433813,LOC107584355,LOC107745729,LOC107687097,LOC107562756 coding upstream 317457 7781915 ~ 7784061 (-)
ppp1r10 ppp1r10,LOC107709274,LOC107745712,LOC107691520 coding upstream 324451 7788909 ~ 7798665 (-)
G401742 NA non-coding downstream 17332 7433787 ~ 7436406 (-)
G401691 NA non-coding downstream 203398 7248948 ~ 7250340 (-)
G401690 NA non-coding downstream 205178 7248324 ~ 7248560 (-)
G401577 NA non-coding downstream 473163 6920630 ~ 6980575 (-)
G401558 NA non-coding downstream 684004 6769532 ~ 6769734 (-)
G401758 NA non-coding upstream 103075 7567533 ~ 7567747 (-)
G401815 NA non-coding upstream 243404 7707862 ~ 7708191 (-)
G401811 NA non-coding upstream 271173 7735631 ~ 7738442 (-)
G401812 NA non-coding upstream 274152 7738610 ~ 7739244 (-)
G401813 NA non-coding upstream 274891 7739349 ~ 7741757 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 176956 7254433 ~ 7276782 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other downstream 1079238 6371617 ~ 6374500 (-)
G401205 nelfe other downstream 1278478 6172988 ~ 6175260 (-)
G400815 NA other downstream 1863991 5587398 ~ 5589747 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 2313358 5128235 ~ 5140380 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 404945 7869403 ~ 7917693 (-)
G402673 NA other upstream 1679412 9143870 ~ 9161470 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other upstream 1762937 9227395 ~ 9284493 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other upstream 1922537 9386995 ~ 9416253 (-)
si:ch73-347e22.4 NA other upstream 4312911 11777369 ~ 11790179 (-)

Expression


Co-expression Network