txnl4a (txnl4a,txnl4a.S,txn4a,LOC106570226,LOC106570228)


Basic Information

Item Value
gene id txnl4a
gene name txnl4a,txnl4a.S,txn4a,LOC106570226,LOC106570228
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 9696064 ~ 9700029 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942147.2
TGAAACGCTTTAGTTTGTTCGAGGTGACGTCACTTCCTGGAACCGCGTCCGGAGGCTGAAAGGACTGTGTGCGGTTGTGTGCGGTGTTacacaaaagaaacagaagCAAACAAACGCTTGTCTGCTTTCATTTGCTTAAAGACAGTACTGTTCTCTTGAGCCAAGATGTCGTACATGCTTCCTCACCTCCACAATGGCTGGCAGGTGGACCAGGCCATTTTATCTGAAGAGGACCGTGTGCTTGTCATCCGATTTGGCCACGACTGGGACCCTACATGCATGAAAATGGATGAAGTTTTGTACAGCATTGCTGAAAAGGTCAAGAATTTTGCTGTGATTTACCTGGTGGATATCACTGAAGTGCCAGATTTCAACAAGATGTACGAACTGTACGACCCCTGCACAGTCATGTTCTTCTTCAGGAACAAGCACATCATGATCGACTTGGGCACAGGTAACAATAACAAGATCAACTGGACGATGGAGGACAAACAGGAGATGATCGACATTATTGAGACCGTCTACAGGGGAGCACGCAAAGGAAGAGGTCTTGTGGTGTCCCCCAAAGACTACTCAACCAAATACAGATActaactttatatatatttttcttacttGAAACATATTATCCAGTTTATTCAGTGACATTAATCTGGATGGACGCCTCACTGGGacagtttgtttattcatatgGACACAGCACTGACCTGCCCTTGtgttaataacttttttttccccctatttaAGGAAGTTTTTCGTAATTTTCATCTATGATCAGGAAAACGTGTGACCCGTGTCAatttattgtcatatttttttcaatgttgTGAATAAATGTTTTACGAGAAACTG

Function

symbol description
txnl4a Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U4/U6 x U5 tri-snRNP complex; U5 snRNP; and spliceosomal complex. Is expressed in liver. Human ortholog(s) of this gene implicated in Burn-McKeown syndrome. Orthologous to human TXNL4A (thioredoxin like 4A).

NR:

description
thioredoxin like 4A S homeolog

GO:

id name namespace
GO:0005681 spliceosomal complex cellular_component

KEGG:

id description
K12859 TXNL4A, DIB1; U5 snRNP protein, DIM1 family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942147.2 True 852 mRNA 0.42 4 9696064 9700029

Neighbor

gene id symbol gene type direction distance location
atp6v1c1b atp6v1c1,LOC108273274,LOC108424992,LOC102305030,LOC102207943,LOC100703061 coding downstream 2876 9681913 ~ 9693188 (-)
si:ch211-215i13.3 NA coding downstream 17113 9672774 ~ 9678951 (-)
spire1a LOC108273070 coding downstream 26609 9627293 ~ 9669455 (-)
fam91a1 fam91a1,LOC107724353,LOC107702086 coding downstream 83757 9586308 ~ 9612307 (-)
lratd2a LOC108272401 coding downstream 113172 9581212 ~ 9582892 (-)
adnp2b LOC108273309 coding upstream 1775 9701804 ~ 9711107 (-)
LOC113543808 rarb,LOC107103632 coding upstream 60855 9760884 ~ 9903805 (-)
nr1d2b nr1d2,nr1d2b,LOC108273061,LOC106570286 coding upstream 354989 10055018 ~ 10069626 (-)
rpl15 rpl15 coding upstream 380457 10080486 ~ 10084170 (-)
ube2e1 ube2e1,LOC108272959,LOC105903698,LOC107743927,LOC107655879,LOC107565235 coding upstream 396095 10096124 ~ 10113933 (-)
G402892 NA non-coding downstream 75465 9620130 ~ 9620599 (-)
LOC113543915 NA non-coding downstream 319025 9376926 ~ 9377039 (-)
G402674 sfpq,LOC106570021 non-coding downstream 554241 9139017 ~ 9141823 (-)
G402405 NA non-coding downstream 1081260 8612118 ~ 8614804 (-)
G402142 NA non-coding downstream 1174020 8521358 ~ 8522044 (-)
G403080 NA non-coding upstream 30654 9730683 ~ 9731257 (-)
G403072 NA non-coding upstream 59616 9759645 ~ 9760497 (-)
G403086 NA non-coding upstream 64645 9764674 ~ 9764904 (-)
G403134 NA non-coding upstream 163004 9863033 ~ 9863314 (-)
G403164 NA non-coding upstream 196867 9896896 ~ 9897124 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 279811 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 411571 9227395 ~ 9284493 (-)
G402673 NA other downstream 534594 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 1778371 7869403 ~ 7917693 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 2419282 7254433 ~ 7276782 (-)
si:ch73-347e22.4 NA other upstream 2077340 11777369 ~ 11790179 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 2445569 12145598 ~ 12256372 (-)
G404644 NA other upstream 2730966 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 2815287 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 2870435 12570464 ~ 12570536 (-)

Expression


Co-expression Network