si:dkeyp-92c9.2 (LOC108272361,LOC107571465,LOC107598237,LOC108413164,LOC107731579,LOC107702702,LOC107738595)


Basic Information

Item Value
gene id si:dkeyp-92c9.2
gene name LOC108272361,LOC107571465,LOC107598237,LOC108413164,LOC107731579,LOC107702702,LOC107738595
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5209153 ~ 5213318 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942148.2
CAGGACCAAGTTCGCGTTCTCGGAACATGGACTTCTCCTgcggttttatatatatttataaaaaaaaaaaatctgccagtgCTGCATGAGCTTTTCTTCTGAAAGCTTCATTCCTGTCTGTGgaaattaaaacttaaaaagtgGAGCAAGTGACACGTTCAGGTTCACGTCCAGTGAAGTGGTTATTTTATTGAGTTGCTCATgactgacattatttatcagGAGCAGCATCTTCAGTGCAGTAGGAGTGTATGTAAGTCGGAGTGACCTGTGCATCCGCACTGGAGTTGGCTGGACATCATCAGGGTACGTCCATGCCATTTACCTCCCCTGTCTGGGCTTCAGGGATTTCAGCCACTGAAGGAAAAATTGCTTGACATCAGGACTCGTCCTACGAGACCCCACCACTCAGTTTAGTGTTTAAGACTCATCAGTTTTCTCAACATGGGCACTGCTTTGTCCCTGTCTCCGGGTCCCCAAAAATCTCACTACTATGATGACCGGCCTAACTCTCTCAGCCGCTACCCGAGCTTGAGCAGCCGCTCTTTGACCACTCAGAAGGAGCATGGGCTCAAATCACGCGGACAATCTATTTTCCTGCCTGCTCTCACCTGGAAACGTCTGGTGGCCTCCACTAAGAAACGGGGTTCCTCTAAGAAAGGGTTTCCCACCAGCCAAGGAGCCATTGGAGCTCCACTTCACAACAACAACCACATCTACCAGAAGGACCCTGTCTTACACCTGAACCGAGAGAATGTAAAAAAGTCCCTCTCGTGTGCGAACCTTTCCAGCTATGAAGCTCCAGCAGGTCTGGGCTTGGGAATGGGGTTGAACTTGGGCTATGTTAAACCACAGCAGCTTTCTTCAGTCAAAAAGGTTTCTCACGGAAACTCTTCTCCAAAACGTGTGATTGTCCAAGCATCTACAAGCGAGCTCCTGCGATGTTTGGGTGAATTTCTATGTGCACGATGTTATCGACTCAAGCTCCTTTCCCCCTCTGATCCGGTTCTGTGGCTACGTGCTGTAGATCGCTCACTTCTGCTCCAGGGCTGGCAGGACCAAGCCTTCGTGACGCCAGCGAACGTAGTGTTCATCTATATGTTGTGCCGAGATGTAGTGGACGGCGAGGTGGTCTCCTCAGAACACGAACTCCAAGCTGTCCTTCTCACCTGCCTCTACCTGTCCTATTCATATATGGGCAATGAGATCTCTTACCCACTCAAGCCCTTCCTGGTGGAGGCAGCCAAGGAGGCATTTTGGGACCGATGCCTGGCCATTATTAATGCCACGAGTGCCAAGATGCTGCGCATCAACGCGGACCCACATTTCTTCACTCAGGTATTTGCGGAACTGAAAAGCGAAGGTGGATGCGGACTGCAGGATTATGGACGATTACTGGATCGGTGAGTGGAGAGGGAGTGGAACTTCCTCCTTCACTGCATCCCCAGTAGTAACCTTTGTGTTCTTCTCTAAGTCCTGTTCTGAAGAATCAGTGTCTCTTAATACCTCTGTGGTGTAAAGATCTGTAGGGTCACTCTAAATCAGTCCATCACCGTTGGGTCACAGTGTGTTGGGCACTTGACCTTGTTTCAACTCTGATATTGACCTCATAGATGTTAAAACTGGATAGTGgatctgttttcattttcagacaGACTTGAGGTGCCTTGAAAGTGAAGTATGTTGAAGACTTTTTGCAAATCCGTCTGCATTTTGACACGTGATCAAATGGCATCGGGTCAGTAGATTGGAAGCAGGTTTCACCAACTGCAATGGATCCTAATACGGTTTTGGGATgcagttttttcccctttttcttaAGGGGGAGCACCAGATTAGAGATGAAACCGTGTGATGTTAAAGACATCAGGCTGCTCACCTTTGACAAAGGCCACAAGTCTGCCACCTGAGCCCTTCTTAAGCCTAAATCTCAGCCTAAAACTATCCACATAATGAATGGCACACGCCTGATAATACTTGACCAATGGGTAGTCTATCCAGAGTGTTGGGATACTGTCCATCTTCATGGAAGAAACACTAGTTAGTCCATCTATCCCATGGCAACGTGTTAGCAGACCACAATGTTTTCTGGGAACATTTCATAGGACAAGACCAATGGAGAACACTTTCCCCCAAAGTCAGAGTTTAGCCAATGTGGGTAATCTGCATTTTGACACCATCCTCCACAACACAATAGCAAAAAGAGgtattattaaaaattgaaaatgacTTCTCTCATAACCAAATTGACAGTGCACCAAATTTGATGTTTTGGCTAAGAGTTGGTAAAGAATTAGCATACTATGATCAGTTCCTCAGGAGAGAGTTGTGTACATTCATCAGCTGTTtaatgtgacttttctgtaagaaaaTCCAAGTggaagcactgtgtgtgtgtgtgcgcgtgtgtggaTGTCCATTAACAGTTTGGTACTGTGTTGTCCTTCCTTTTGTTTTATGAGTCCAGATTTAGGGTGCTGTGGCATTAATAAGATTAACAGATtacccacacacacttagatACACAGCACTTGTATCTTGCAGGGCTAATCCATACCGCTTGGCCGGTATGTTAATTCCAAGCCTTTCTGTGTCACGCGTCTGTTCTCTCCTGCAGTACCTAACTAAGGCTGGTGGTCAGcgaaaatctgtgtgtgtgtattttttgacAGGGAGGAAGGAAGTGTATTCTGGGTGAAGGGAATTTGAAGAGATGAGTTCAGGCATTTCTAAAAGCTGTCAGGTCACTGTGGTCACGCACAGCTGACTTTTGTCCAGGTGTGTGTCctgacagagaggacacaggGATTTTCAGGGATGCAGGGAGCTTTTGTCTGTGCCCTCCCCAACAGAAATTGAAAACCATTTTCCCAAACTGTCTGTATGCAAGTTAAAGATATACTCAAATACTCATTTTGATGTTCAGACTCACAGACGAGCCCCTGTTCATGTAATATTTagttcatttcagtttcttGAATAAAGCAAGGCTTCATTTAAAACCATAGAAAGCAAAAGtgatataaaaagaaatgacaggTGTCCAGAAGTTCCTTTATAGACTTCTCTCAAATTTTCATTCCAAGCatactttttaaagaaagtaaTTATACATCGACACATGGCTAAACTGCATCTATAAGGTATAGCTGTTCGGTTGTGGGTCAGATCATGAATTTGAGAGAGCAGCACGTGGCTTTGCAGTTAACCGTTAATCTGATTGTGCTGTACTGCAGTGCCACAGGAGGCATCAGCCTCTACCCTGcctactcatacacacagaaatacaaaaaagactATTCTAAACTCTAGGCATTTTACTCATACAATAGATTTAGATGAGTACTCATGCCAaaacacgtgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacagtgataatctgTTAATTCCTTTCTACCCCAGCCAAGaacaaaaagatgaaaatgCAGCATATATGTGAGTCAGATCAGCAGAGATTTCTGTTTGTTCTGCCTGGGTCATCAGCACCACCGCCTGCTCCGACACACACTTGTTCTCGATCAGATGCCTAGCAGTGCAGTTATATAATATCCATATGAACAGCCAACACTTAAAAAGCAGCAGATGACTGAAAACAACAAGCAAAGTTTTGCTGCATAATATTATCAGATATCGATGTGAGACTCTTAAGGCTGTATTATGCTTATTTCCAACAAAGTTcccaagcctggaaa

Function

NR:

description
PREDICTED: cyclin-dependent kinase 5 activator 1-like

GO:

id name namespace
GO:0016533 protein kinase 5 complex cellular_component

KEGG:

id description
K11716 CDK5R1; cyclin-dependent kinase 5 activator 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942148.2 True 3740 mRNA 0.45 2 5209153 5213318

Neighbor

gene id symbol gene type direction distance location
LOC117596409 NA coding downstream 56545 5151088 ~ 5152608 (-)
LOC117596451 LOC108261350,LOC108261581 coding downstream 81716 5120270 ~ 5127437 (-)
si:ch211-195b13.1 si:ch211-195b13.1,LOC108273319,LOC103036792,LOC108411161,LOC105892152,LOC104955017 coding downstream 149570 5053765 ~ 5059583 (-)
eya3 eya3 coding downstream 157111 5040286 ~ 5052042 (-)
eepd1 eepd1 coding downstream 254907 4928478 ~ 4954246 (-)
LOC113543887 LOC108262220 coding upstream 1682 5215000 ~ 5221257 (-)
LOC113543693 LOC108273363,LOC108262220 coding upstream 15949 5229267 ~ 5232051 (-)
LOC113543750 NA coding upstream 37798 5251116 ~ 5257472 (-)
LOC117596412 LOC108262220 coding upstream 45237 5258555 ~ 5263273 (-)
LOC113543852 LOC108262220 coding upstream 55000 5268318 ~ 5276318 (-)
G400501 LOC108272940 non-coding downstream 173231 5030859 ~ 5035922 (-)
G400517 LOC108273316 non-coding downstream 196358 5012187 ~ 5012795 (-)
G400500 NA non-coding downstream 290270 4911350 ~ 4918883 (-)
G400503 NA non-coding downstream 325150 4881706 ~ 4884003 (-)
G400494 NA non-coding downstream 375170 4833754 ~ 4833983 (-)
LOC113543905 NA non-coding upstream 26781 5240099 ~ 5242052 (-)
G400622 NA non-coding upstream 65585 5278903 ~ 5279314 (-)
G400676 NA non-coding upstream 157754 5371072 ~ 5380937 (-)
G400826 NA non-coding upstream 370237 5583555 ~ 5587381 (-)
G400913 NA non-coding upstream 598026 5811344 ~ 5812012 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 68773 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 200689 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 574096 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 870726 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 1049403 4150899 ~ 4159750 (-)
G400815 NA other upstream 374080 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 959670 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 1158299 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 2041115 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 2656085 7869403 ~ 7917693 (-)

Expression


Co-expression Network