LOC113543737


Basic Information

Item Value
gene id LOC113543737
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11517930 ~ 11523343 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942158.2
CATAagacactattaaaaaaaagaaggacaAATGTAGTAACAATAATGGCAAAGTATTAGTAATGCTGATAGTTACAACAATAAGCAGTTCTTTAGTAGGTGTATAAGGAAATGAAACACTTCCTGGAAAACGAAACATGAAGGTGAGTAAAGGTATGGAGTATCATGGGTGTGGTGCACGTAGTGAACTATCGTCGGACTGCTCAAACACGGAGATCATTGCTTTAGAAGGTTTTCTTGAGTTTGTTGTTGAATCATGGAAACTGGAGCTATCAGTGTTTCGAACACGCAAAACAAAGCTTTCAAAAAGAGGAAACCCCGTCCAAATTTCTTGAAAAGTCAAGAAAGTAATAAGGAAAGCTTAATATCATGCAGTTACTCATTAATCTACCACACACTGTTGATGACaatagagaatgaaaaaaagggaaatgacAAACTCTGTGTTTACATGGATGAGATGCTTCATAGCATTTTCTTCCTTGGGTACATTTATGACTCACCCCGCTTGACTCCCAGTGATTTCTTCAGAAGTCCTGAAACACGTGAACAGGTGATGAAAAAGTTTCCCCGGCCATTTGAGAAGTACAGAAGTCATCTGCCAACTCGCACTCCCTTTTCCATTCTGCTAAACATGATGGAGACACTTTATTGCActgaagagaaaataatagaagAGCTTCTGCGTCTGCTGAAGAAACTTGGATTCCCAAACCCTCTTCACAAACCAGGCAGCAAATACGAGCAATATTACACACTGGAGTCAACAGTAATCTGTGTGTGCTATTCAGATTCTGATTCACAGAGGTATTACGGGGCGTCTCTTTCCTGCAGAAAAGGAAATGCAAAGAGAATTCTGATCGACCTGTCTTGTCTTAAAACATGGCACGAGTTTGTATCTCATGCAGTCATGTCATTTTATCCAGGACCTTCTGGTGATGGTATAACATTCCCTGAGTCACTGAAATGTCAGGCATACATTAGAGACTGGAACAAAAATGTTTATAGTAAAAGACGTCCATGTTTAAACTGTAAACAGCTGTTTAATCTAAAAGACGCAGATCCAGATAAAGTGTATCATCCCTATGGGAACTGTGCTGAGACAGAGTGCTTGAGCAAACTGCTCTTCAATAATCAATATATACGGGAGAACACACGGATGGAAAATCATACAGAGACAAACTTAGAGACACTTCGAGGTTTAACAAAAGAACGCTTGACAATGCAGCTTGACCAAGTTGGCATTCAAATGAATAATGAGAACTTTCTCTTCTACATCCCAACGCAAATGAAGTATAATGAAGAATGAAATTTGTGTTTATCTTAAAGAACAGTTtataatatatgcatatatagaGTGTTGCTTAAGGTAAACATATATGCAttatgctcacacacacacacaggaacacctgtacacttgctcattcatgcagttatccattTAGCCAATGCTCAAGAGCTGAAGAttgaaaaagaccaggtaatGCAAATTTTCACTGAGCCTATatccactgcagcctcagattcatgttcttggctgacaggactggaacctgatgtggtcttttgccGTTGCAGCCCATCTGactgttgtgcattctgagatgcttttctgttcaccacggttgtaaagagtgattatttgagatATCACTCGCAGCCTTCCTGTCATCTCAAACCACTCTGGCTGTTCTCCTTCAACCTCTCTTatgaacaaggtgtttccacctaGAGAACTGTCACTAACtggatgttttatgtttttcacacaattctgtgtaaactctaaaggctgttgtgtgtaaaaatctgcagtaggagattagcagtttctaaaaaataaaaaataaaatcagcccATGTTCCAGAGTCACTTAGATCATAATTTTATTccagtctgatgtttgatgtgaacattaactgaagctcttgacctgtatctgcacgatTTTATGTATTTCGCTGCTGAcagatgattggctgattggacaactgactgagcaggtgtttctattaaaatgaccagtgagtgtatataaaaattat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942158.2 True 2049 mRNA 0.39 5 11517930 11523343

Neighbor

gene id symbol gene type direction distance location
LOC113543760 grb10a,LOC108273075,LOC108440880,LOC107739542,LOC107667783,LOC107565574,LOC107656633 coding downstream 19671 11448455 ~ 11498259 (-)
trnap-ugg_24 NA coding downstream 76344 11441515 ~ 11441586 (-)
trnaa-ugc_19 NA coding downstream 77195 11440664 ~ 11440735 (-)
LOC113543901 LOC108273294,LOC108413341,LOC107550656,LOC107737765,LOC107700701 coding downstream 87612 11419153 ~ 11430318 (-)
LOC113543744 fam46bb,LOC108273300,LOC108413340,LOC105903734,LOC107712594,LOC107700817,LOC107737782 coding downstream 120591 11384193 ~ 11397339 (-)
LOC113543691 LOC108272892 coding upstream 2173 11525516 ~ 11529036 (-)
si:ch73-109i22.2 NA coding upstream 18101 11541444 ~ 11552179 (-)
LOC117596452 LOC108273353 coding upstream 200234 11723577 ~ 11732473 (-)
apoea LOC108272669 coding upstream 268877 11792220 ~ 11794417 (-)
LOC113543858 LOC108272670 coding upstream 276153 11799496 ~ 11809781 (-)
G403851 NA non-coding downstream 121890 11395737 ~ 11396040 (-)
LOC117596437 NA non-coding downstream 154974 11327698 ~ 11362956 (-)
LOC117596438 NA non-coding downstream 257539 11256791 ~ 11260391 (-)
G403823 NA non-coding downstream 304092 11211886 ~ 11213838 (-)
G403717 LOC107675819,LOC107719741,LOC107739129,LOC107589765 non-coding downstream 366751 11150807 ~ 11151179 (-)
G403893 NA non-coding upstream 7950 11531293 ~ 11533016 (-)
G403981 tpm3,LOC100305075,LOC107748711,LOC107693397,LOC108440886 non-coding upstream 145420 11668763 ~ 11696191 (-)
G403982 NA non-coding upstream 155912 11679255 ~ 11680996 (-)
G404060 NA non-coding upstream 239768 11763111 ~ 11765767 (-)
G404198 NA non-coding upstream 297707 11821050 ~ 11821426 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 2101677 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 2233437 9227395 ~ 9284493 (-)
G402673 NA other downstream 2356460 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 3600237 7869403 ~ 7917693 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 4241148 7254433 ~ 7276782 (-)
si:ch73-347e22.4 NA other upstream 254026 11777369 ~ 11790179 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 622255 12145598 ~ 12256372 (-)
G404644 NA other upstream 907652 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 991973 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 1047121 12570464 ~ 12570536 (-)

Expression


Co-expression Network