si:ch73-109i22.2


Basic Information

Item Value
gene id si:ch73-109i22.2
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11541444 ~ 11552179 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942160.2
GTACAGCACAGGttgtttccttctctctctctctctcgctctctctctctctctctctctctctcgcactctctctctctctcatcccacACCCACACGATCTCAGTGAAGCCAAACCACTTATGAATAGTTGACGAGTTGACAATACTCCAGCATCCTGTCTCTGAAGATGGACTTTGACTATCAAAAAATTAAAGACGATGAATCTCGTCAGAGGGAGGAGCGAATCAGCTCTCTCCCAGTCCTACAGCCAAGACCCATGCATCGGCAATCTACTGCTACAGAAGCTCCATCCAATATCCAGAAGCCTCCAATCAAACCCAGACGCAGCATCAAATGCCGTCCCATCACACAGCCAGGATCAGGACAATCAGACAGCCAGCCCAATCAGATGGAGAATGAAgaaCGGAAGCGAATCGCTCCATCTCAGGTGCTGAACCCTACAGGGCCCCTGGATGCTCAGACTCCATCTCTGAAGGCTCATAATCTGCTGTGGTTTCAGAGAACGCAGCTGCCTCGGCTGCCAAAACCCGTACCGTATTGGCTCCATGGCTTTGCCACACGCAGgGAAGCAGAGCAGCTACTGCAGGATAAGCAGCAGGGCTGTTTCCTGGTGAGGCTCAGTGAGTCAAAGGTTGGCTTTGTGCTCTCTTATAGAGGTGCAGACAAGTTCCGTCACTTCATCATAGAGGACGAATGTGACACGCCTGGGACGATAGGTCACTACGTCATAGCTGGGGAGGAAAGCAGGCATTACAGTCTTGAGGGCCTGATAAACTACTATACCCACAATCCAGTGGGGCCTTTTAAAGAAACACTCACTGTGCCTTGCATGCAGCCTAATGGCATCTCTGAGGATGGAGCAAAGCTGGAAGGGAGAAACGAAGAAAGAGGTGAAGAAAGAGTAGCCACTCCACCAAGTAGCAGAGAATGCCCTCCCACAGACTCCACAGGACATGATGTCCATGCTGCCCCGGAGTCAGCACAGTACGCTGTGGTGAGGAAAGCACTGAGGAAGTCTCACTCTCTATCCGAGTGCATGACTGGATCTGACTTGCTGCCGCTTGTCCAAGAAAATACAGACAGAGGAACGAAAACAGAGGACAACACACTAGAGCCTGTGTTTGACAACACAGACATGTGTGTAGGAGGAGACGTGGCCCACCCTGTGGATGCCCCCTACGCGCGCGTCAACAAACCCCTTCGGCCAGCACGACTTTCCTCCATCGACGACACCGATGCCAGCGTATGGGGTGCATCAGCAGCCACCGATTCTCAGTCTTTCCCCAATGTTGCAGCCGTAGCAGAACAGAAATACTGGGAACTGGAGCCTATGCATACTTACGAGGAGGCTCTGCACACACGTGCTGGTGATGATCAGATTGATTTCTACGCAGTTGGGAGGCACAGAGAAAATGCAAGGGATGCAGCAGATCTCCATACCAATCATGTCTACTCAGAGATCAACATTAAAGGGACCAGAGATGATCCCATATCAGCTTCTCCGCCACTCCGGGCGGACACAACATTTAGCTCTACCCCGTCCTCCACAAGACCTAGACTGCCCCCAAGATTTGCCTCTAGACCTGCACATGCTCCAGTACGACCTGAGAGTAGTACTCAGAATTTTGGTGTTTCAGCGGTGAGGAATTCGCCCCCTTACCAATCTGAGCAGCCGCTGGCAGAAAACTCTGAGTTCTCCATATATGAGCAGATTCCAGAAAGACTGAACAAATCCAGACCTCCATTGCCGCCTCCACAACGCTGACTCCAGGTCATCTCCCTTTGACGTCTAACCCTTTCTACTAGCAAATACATCTGTTTTACACTGAATGAGATAGCTACTCACAGAAAATGGTAACTACTGAAACCAAAAGCATACAGCAGTCATTCCACTTGATGTATATGGTGCTGTACATAGCAATGCTTAACCTTATCCCGCACAAGTACCACttca
>XM_026942161.2
AGCACAGGttgtttccttctctctctctctctcgctctctctctctctctctctctctctcgcactctctctctctctcatcccacACCCACACGATCTCAGTGAAGCCAAACCACTTATGAATAGTTGACGAGTTGACAATACTCCAGCATCCTGTCTCTGAAGATGGACTTTGACTATCAAAAAATTAAAGACGATGAATCTCGTCAGAGGGAGGAGCGAATCAGCTCTCTCCCAGTCCTACAGCCAAGACCCATGCATCGGCAATCTACTGCTACAGAAGCTCCATCCAATATCCAGAAGCCTCCAATCAAACCCAGACGCAGCATCAAATGCCGTCCCATCACACAGCCAGGATCAGGACAATCAGACAGCCAGCCCAATCAGATGGAGAATGAAgaaCGGAAGCGAATCGCTCCATCTCAGGTGCTGAACCCTACAGGGCCCCTGGATGCTCAGACTCCATCTCTGAAGGCTCATAATCTGCTGTGGTTTCAGAGAACGCAGCTGCCTCGGCTGCCAAAACCCGTACCGTATTGGCTCCATGGCTTTGCCACACGCAGgGAAGCAGAGCAGCTACTGCAGGATAAGCAGCAGGGCTGTTTCCTGGTGAGGCTCAGTGAGTCAAAGGTTGGCTTTGTGCTCTCTTATAGAGGTGCAGACAAGTTCCGTCACTTCATCATAGAGGACGAATGTGACACGCCTGGGACGATAGGTCACTACGTCATAGCTGGGGAGGAAAGCAGGCATTACAGTCTTGAGGGCCTGATAAACTACTATACCCACAATCCAGTGGGGCCTTTTAAAGAAACACTCACTGTGCCTTGCATGCAGCCTAATGGCATCTCTGAGGATGGAGCAAAGCTGGAAGGGAGAAACGAAGAAAGAGGTGAAGAAAGAGTAGCCACTCCACCAAGTAGCAGAGAATGCCCTCCCACAGACTCCACAGGACATGATGTCCATGCTGCCCCGGAGTCAGCACAGTACGCTGTGGTGAGGAAAGCACTGAGGAAGTCTCACTCTCTATCCGAGTGCATGACTGGATCTGACTTGCTGCCGCTTGTCCAAGAAAATACAGACAGAGGAACGAAAACAGAGGACAACACACTAGAGCCTGTGTTTGACAACACAGACATGTGTGTAGGAGGAGACGTGGCCCACCCTGTGGATGCCCCCTACGCGCGCGTCAACAAACCCCTTCGGCCAGCACGACTTTCCTCCATCGACGACACCGATGCCAGCGTATGGGGTGCATCAGCAGCCACCGATTCTCAGTCTTTCCCCAATGTTGCAGCCGTAGCAGAACAGAAATACTGGGAACTGGAGCCTATGCATACTTACGAGGAGGCTCTGCACACACGTGCTGGTGATGATCAGATTGATTTCTACGCAGTTGGGAGGCACAGAGAAAATGCAAGGGATGCAGATCTCCATACCAATCATGTCTACTCAGAGATCAACATTAAAGGGACCAGAGATGATCCCATATCAGCTTCTCCGCCACTCCGGGCGGACACAACATTTAGCTCTACCCCGTCCTCCACAAGACCTAGACTGCCCCCAAGATTTGCCTCTAGACCTGCACATGCTCCAGTACGACCTGAGAGTAGTACTCAGAATTTTGGTGTTTCAGCGGTGAGGAATTCGCCCCCTTACCAATCTGAGCAGCCGCTGGCAGAAAACTCTGAGTTCTCCATATATGAGCAGATTCCAGAAAGACTGAACAAATCCAGACCTCCATTGCCGCCTCCACAACGCTGACTCCAGGTCATCTCCCTTTGACGTCTAACCCTTTCTACTAGCAAATACATCTGTTTTACACTGAATGAGATAGCTACTCACAGAAAATGGTAACTACTGAAACCAAAAGCATACAGCAGTCATTCCACTTGATGTATATGGTGCTGTACATAGCAATGCTTAACCTTATCCCGCACAAGTACCACttca

Function

NR:

description
translocon-associated protein subunit beta-like

GO: NA

KEGG:

id description
K08273 SH2D2A, VRAP; SH2 domain-containing protein 2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942160.2 True 1957 mRNA 0.51 9 11541444 11552179
XM_026942161.2 False 1950 mRNA 0.51 9 11541444 11552175

Neighbor

gene id symbol gene type direction distance location
LOC113543691 LOC108272892 coding downstream 12408 11525516 ~ 11529036 (-)
LOC113543737 NA coding downstream 18101 11517930 ~ 11523343 (-)
LOC113543760 grb10a,LOC108273075,LOC108440880,LOC107739542,LOC107667783,LOC107565574,LOC107656633 coding downstream 43185 11448455 ~ 11498259 (-)
trnap-ugg_24 NA coding downstream 99858 11441515 ~ 11441586 (-)
trnaa-ugc_19 NA coding downstream 100709 11440664 ~ 11440735 (-)
LOC117596452 LOC108273353 coding upstream 171398 11723577 ~ 11732473 (-)
apoea LOC108272669 coding upstream 240041 11792220 ~ 11794417 (-)
LOC113543858 LOC108272670 coding upstream 247317 11799496 ~ 11809781 (-)
trnay-gua_12 NA coding upstream 258204 11810383 ~ 11810470 (-)
trnay-gua_13 NA coding upstream 259698 11811877 ~ 11811964 (-)
G403893 NA non-coding downstream 8428 11531293 ~ 11533016 (-)
G403851 NA non-coding downstream 145404 11395737 ~ 11396040 (-)
LOC117596437 NA non-coding downstream 178488 11327698 ~ 11362956 (-)
LOC117596438 NA non-coding downstream 281053 11256791 ~ 11260391 (-)
G403823 NA non-coding downstream 327606 11211886 ~ 11213838 (-)
G403981 tpm3,LOC100305075,LOC107748711,LOC107693397,LOC108440886 non-coding upstream 116584 11668763 ~ 11696191 (-)
G403982 NA non-coding upstream 127076 11679255 ~ 11680996 (-)
G404060 NA non-coding upstream 210932 11763111 ~ 11765767 (-)
G404198 NA non-coding upstream 268871 11821050 ~ 11821426 (-)
G404235 NA non-coding upstream 418563 11970742 ~ 11970964 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 2125191 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 2256951 9227395 ~ 9284493 (-)
G402673 NA other downstream 2379974 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 3623751 7869403 ~ 7917693 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 4264662 7254433 ~ 7276782 (-)
si:ch73-347e22.4 NA other upstream 225190 11777369 ~ 11790179 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 593419 12145598 ~ 12256372 (-)
G404644 NA other upstream 878816 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 963137 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 1018285 12570464 ~ 12570536 (-)

Expression


Co-expression Network