kpna6 (kpna6,LOC107584279,LOC107745716,LOC107562870)


Basic Information

Item Value
gene id kpna6
gene name kpna6,LOC107584279,LOC107745716,LOC107562870
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 7481825 ~ 7501213 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942190.2
TCCGTAGATCTCCGACATATTGTTTGTGAGGAGCGATTTCTTGAAGACCCTGAGGGAGCGAAGATTATTTCCTTTAGATCATCACAGGGCGTTAAAACTGCTTACCTTGTAAAGTCAGCAAGATGGAGCCGTCAGCGAGTCCTGCGAAGGATAACTACAGGATGAACCGCTACAAGAACAAAGCGCTCAATCTGGAGGAGATGCGCCGGAGACGAGAAGAGGAAGGCATTCAGCTGaggaaacagaaaagagaacagCAGCTGTTTAAGAGGAGAAATGTGGAGTTGCTGAACGAGGAAGGAGGAATGTTTGACAGCCCTCTCATGGACGCTTATGTCAGCTCCAGCACAGCACCAGAAGGAGTCATAACAAGAGAcatggtggaaatgctcttcTCAGATGATCCTGAACTGCTGCTGGTTACCActcagaaattcagaaaactACTGTCCAAAGAACCGAACCCACCCATCGATGAAGTTATCAGCACTCCAGGAGTCGTAAACAGATTTGTAGAGTTCCTTGAAAAAAGCACTGATTGCACATTGCAGTTTGAAGCAGCCTGGGCACTGACCAACATCGCCTCTGGGACGTCTCAACAAACTAAATTTGTGATCGAGGCAGGTGCTGTGCCAGTGTTCATCCAGCTGCTCAACTCTGAGTTTGAGGACGTCCAAGAACAGgCGGTGTGGGCATTAGGGAATATTGCAGGAGACAGTGCCATGTGCAGAGACTTCGTACTGAACTGCAATATCCTTCCACCACTGTTAACGCTGCTGACCAAATCAACTCGTCTCACAATGACCAGGAATGCTGTGTGGGCGCTGTCCAACCTCTGCAGAGGCAAAAGTCCACCACCCGACTTTGAAAAGGTGTCTCAGTGCCTGCCCGTGCTGTCCCGCCTGCTGTTCAGCAGCGATCCCGATCTGCTGGCTGACGCTTGCTGGGCTCTGTCCTACCTCTCAGACGGACCCAACGAGAAGATCCAGGCAGTGATCGACTCAGGAGTCTGCAGGAGGCTCGTAGAACTGCTCATGCACTCTGATTATAAAGTGGCTTCTCCAGCTTTGAGAGCCGTTGGGAACATCGTCACTGGAGATGACATTCAAACACAGGTGGTATTGAACTGCTCGGCTCTCCCATGCCTCCTTCACCTGCTCAGTAGCGCAAAGGAATCCATCAGGAAGGAAGCCTGCTGGACCATCTCCAACATCACGGCAGGAAACCGAGCTCAgatacagACGGTCATCGACGCAAACATCTTCCCAGTGCTGATAGACATCCTCCAGAAAGCCGAGTTCCGCACCAGGAAAGAAGCAGCATGGGCCATAACTAACGCCACGTCAGGTGGCACGCCCGAGCAAATCCGGTATCTGGTGAATTTGGGCTGCATTAAGCCCTTGTGCGATCTGTTGACAGTGATGGATTCTAAGATCGTGCAGGTCGCTCTGAACGGACTGGAGAACATTCTGAGACTGGGAGAGCAGGAAGCCAAGCAGAACTGCAGCGGCCTCAACCCTTACTGCAGCCTTATAGAGGAGGCCTATGGCCTGGACAAGATTGAGTTCCTTCAGAGCCATGAGAACCAGGAGATCTACCAGAAGGCCTTCGATCTCATCGAGCACTACTTTGGCGTGGAGGAGGAGGACACCAGTCTGGCTCCGCAGGTGGACGAGAACCAGCAGCAGTACCTTTTCCCTCAGCAGGAGGCCCCCATGGAGGGCTTTCAGCTCTAATCAACCTCCCAACACTCGGTTAGGCTCCGTACGATGCGTCCAGGTCCTTCCCGTGCCCGTATCTGTACTGCAGGCTGTATCCCATGTGCCCTCAGCAGATTAATCTAGACAGACCGTGAGGAAGCGCGCTGCCTGCAGATGAACTTTACCACTGTTTTCACTCACACAAGACTTCAGGAGCTgggcttttatttcattttattctgtcTTAATTTAAGTAGTGCCACTTACAGATTGGctctgggttaaaaaaaaaaaagtattttcctTTTCTAAAACTACCTTACTGGGCACACATTCCCAACACAATCTCATAAACCTGGTGTTTTCtcctgcttcatttgtcttgatttTTAAGCCCACATGTGCAGGCCTTTGGAAAACGATGTGCTTCAGATAGTTCTTAGACATGGCTTTATACTAAGACGAAGGTAACTTGTCATTGAAagacacacttcacacacttttcaGAGGCTTTATGCACTTTAGATAAgactgtcttctctctctccttctgttccTTACTCTGTAATTTTTGGTTTGGAAGTTAAAGACTGAAATTCATCCTGCAGTGTTTAAAATGATATCCAGGGTAGTGGTATTTGAAAGGCAGAATAATTAGTCGTCTACTGTTTGTGGTGTGCGGTGTTCTGGTGTTCTGAATACCTGTAGATTTGCAATCCCATTcgatttattaattaaagaagaaGAGTGCATAGCGTAGGGCTGGGGTTTCACAAAGCTTTAGCACAAAGTTGAATCATTTGGTTTGGGCGTGTGGTTCCGTACCGACACAGCCAATGTGCTTTCCCTTTAAGTAGTTTGGGGtttggtttctttttctttttctttttggctCTGTAATTGCAGCCTGGTATAAGTAGGTGGTGCAGACTGTGTTAAGATCTTTTTTCAGAGTTAGGCCTTTGCATGGTTTTGTATCATTCTATCAACAGTTCCAGTGTATCCCTTGCCAGGTTTTTCGATTCTATTAATCAGCGATCAATAACATTTAACGATTGCACTTGTCCTTACGCTCTTGTTGCTTGGttttcagtcattttctttgaaagtgtttatttaattagttatttacatttaggggcaatttaacaaAGATGGCAAGGGATacataaattgttttatttaaaaaaaaaaaaaaagagctaaacTGTAGgcgaaatatatacatatatatatatatacacacacacacaggaatataAGGCTATATAGTTGCACACACCTCTTGCACACAAAACAACACGGAGGAGAAAACTGCTTCTGGAACTCTCTTCCACAGCTTTTCTGATTTCACTGCTCATGTTCATTCATATGTTCATTTTTGGGTACTGCTCAGAGGCCAAAATGCGAAGTTCTGTCCTATTTTCACGCAGCACGTACGTGTTAAAAGCAGATTTGAATCTAAATTTGAGTTCCGAAGCATTTTTCTCCTCCGTGTACACTACACTGACTCGTGCGTGCGTGCGTAACTGAGTAAAGGTTTGAGAGCGGCGAGCGACGGATGAGGAACGAGACAGTGACTGACGGATGTTCCGTGAAGCGGCGGGAAGAACTTTCGATCGTAATCTGGTAGCTTTCATCACTTCCGATGTTAGCGGTGAAactttatagtatatatagttaGCTGAGTATGTGCTCTACGTGTATAGACATATATAACAAGTTTGTGTCGTCCACTTTTTGGTGTAATGCATGATCAGCGTCGAGGACGATGTGCTAGCATCCATGAGTATTTTGGTCAAGCTGAGATTTTTGAACATCTTGGTGTTTCAGCTAAATATGGATATCTTTTATTAAAATCGTGCCTGAACCTCAATTTTCCTGAACTGTGCTGTCACTCACcagagaatttttatttttacaggtCTTCTGATTCATAAAATTAACTGGAAAGTTCAGATACATTTTTGACCATGTTTAtagatttgtttacattttcatcCCAATTCCGTTTATATTGACTGATGCTTGAGAGGCTCgtgtttatcagtttatcatcACAGAGCGAATCTTCTGGTGAGTGATGGCATTCCATAAAGGCAAAATTGAGGTTAATGTCAGAGCATGAGAACTGTTTGGAGCGGAAAATTATAGTTGAAAAGTTGACTATAATTAAAGGAAATTCAAACGTTTGAGCCATAGTGAAAGTGCTGGTGAAATCTTTGCTCGTGTTCTTTGCCTTTAGTGGTTCAGCTCTGCTTGTGCGGTTTGTGACATTTTCTTGTGCGTAGTGCATGAAAATGTAAGCTGTGTCCCATAACATGGCGTTCAGCATCTGTAAACGTTTCCATTTTACGCTGAAGTTTACAGTTTCACAGTTCTACTCACCCTCGCAAcaacttaaaggaaaaatccaccctgattGACTTCATATCAGTCTTTTATATAATTTGAGCTTCAGTGGCGACAGTAAGTTAGTTTACACTTCTTTCGTTGACAcgttggtctgttttcactttggttaacagtttcctacccacaatgccattcagctagctgctgatagtggtgcagtgggggTTAaaatctctacctaaagagactGATGCAGAGGCGCTTTAGTCTGCACATCTCTCTCTCGCCTCCTcttctgtttgagcagagtgtacagatcaGCTTCCAGAGCTCTAGCTTTGATCCTTATGTCGTCATCGTGCTAGTCATCTCTCAGattgctaactagccgagccatAACTCTGCCTCATATGACTGAGTCCAGCGTTTACCGTCTCCACTACTTCTCCATTTGATTTCTCTTAAATATGACTttgaacatcactggaaaaGGACAAGTGAGagaagaagctcttgctcttttgtttttcacagcaAGGACCTGACCGtaatcccttatgtttgagatcattgAAATTGTCAATCCAGTTgcatgtagggctgaaaacgcATTTTACTTTCATTGGTCAGTAATACAACGGTGGAGAgagtaaacaaacctttaccaGGTGTGTGTAGAAATTATAAAATTCCCCCAAGCATGGAGTACACAGCGCCAATAAATTACTAGCTAATTATAGAaaaaactagtttaaaacattctgTGTATCTCCTCTACTCCTGTTCTCTTTGTGTTCATCTGTACAAATCTTCACAACACGTAGCAAAAGGGTTCGATTCAAACGGACAAAACACTGCATGTGCGAACGCTTCCTTAAACACCGTTGTATCGGCGCTAACGATGACACCATGTGACCTCAGTGCGGTCCACAACCAcgacttctcacaggaataaagaAAACACTGCATCAGCTAACAAAGTAGCACCAGACTCACTGAACACGTCACAcgtatttcaatataaacacgttaaatgtgtttcagggtggacttttcctttaagtgCAAGTTTTTGTAAACTTGTTTAGAGTAATTATATAAAATCGTGGTTCCAGCTGTTCGGTCCCTTGCTTCGGTAAACAACACAATTTATCACTGAGATCaagtaagatttattttaacGTAAAGGCTGATAAAGCTAGGGGAATCGCTGAACCATGTGATCCATGTGGAACTGGAGTATACAGATACGCTTTTGCTCTTGGAGCTTTCTGTGCATCTTTTttggggggagaaaaaaaaactgcttgaCCAGATTACATTGCACTTAAAGGGATACTGCAGCTATCTGTACACGTGTAGATAAAGGGGTTACCAGGAAGAGGTttagttataaaatatatacgtGACTTTCCTCTGTCTGAGAGACTATTGGTGGAGGGGGCGGGGGTAATCATGACAcggaaagaaataaacaaattaattaaaaaaaaaa

Function

symbol description
kpna6 Predicted to enable nuclear import signal receptor activity. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Orthologous to human KPNA6 (karyopherin subunit alpha 6).

NR:

description
PREDICTED: importin subunit alpha-7 isoform X2

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K15042 KPNA5_6; importin subunit alpha-6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942190.2 True 5550 mRNA 0.44 14 7481825 7501213

Neighbor

gene id symbol gene type direction distance location
txlna txlna,LOC108433836,LOC107687085,LOC107562872,LOC107576061 coding downstream 4847 7467045 ~ 7476978 (-)
eif3i eif3i,LOC107691510,LOC107709286 coding downstream 17367 7453738 ~ 7464458 (-)
srfbp1 srfbp1 coding downstream 268530 7207545 ~ 7213295 (-)
e2f3 LOC108272398 coding downstream 276761 7198361 ~ 7205064 (-)
sox4a sox4,LOC108273322,LOC106925895 coding downstream 501535 6979059 ~ 6980290 (-)
khdrbs1b khdrbs1,LOC103045134,LOC103472039,LOC106924560,LOC106945640 coding upstream 243611 7744824 ~ 7756061 (-)
agr2 agr2,LOC108273355,LOC108433813,LOC107584355,LOC107745729,LOC107687097,LOC107562756 coding upstream 280702 7781915 ~ 7784061 (-)
ppp1r10 ppp1r10,LOC107709274,LOC107745712,LOC107691520 coding upstream 287696 7788909 ~ 7798665 (-)
abcf1 abcf1,LOC107745711,LOC107691519 coding upstream 303570 7804783 ~ 7819711 (-)
bag6l bag6,LOC107687076,LOC107745707 coding upstream 343250 7844463 ~ 7858199 (-)
G401742 NA non-coding downstream 45419 7433787 ~ 7436406 (-)
G401691 NA non-coding downstream 231485 7248948 ~ 7250340 (-)
G401690 NA non-coding downstream 233265 7248324 ~ 7248560 (-)
G401577 NA non-coding downstream 501250 6920630 ~ 6980575 (-)
G401558 NA non-coding downstream 712091 6769532 ~ 6769734 (-)
G401758 NA non-coding upstream 66320 7567533 ~ 7567747 (-)
G401815 NA non-coding upstream 206649 7707862 ~ 7708191 (-)
G401811 NA non-coding upstream 234418 7735631 ~ 7738442 (-)
G401812 NA non-coding upstream 237397 7738610 ~ 7739244 (-)
G401813 NA non-coding upstream 238136 7739349 ~ 7741757 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 205043 7254433 ~ 7276782 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other downstream 1107325 6371617 ~ 6374500 (-)
G401205 nelfe other downstream 1306565 6172988 ~ 6175260 (-)
G400815 NA other downstream 1892078 5587398 ~ 5589747 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 2341445 5128235 ~ 5140380 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 368190 7869403 ~ 7917693 (-)
G402673 NA other upstream 1642657 9143870 ~ 9161470 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other upstream 1726182 9227395 ~ 9284493 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other upstream 1885782 9386995 ~ 9416253 (-)
si:ch73-347e22.4 NA other upstream 4276156 11777369 ~ 11790179 (-)

Expression


Co-expression Network