nr1d2b (nr1d2,nr1d2b,LOC108273061,LOC106570286)


Basic Information

Item Value
gene id nr1d2b
gene name nr1d2,nr1d2b,LOC108273061,LOC106570286
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 10055018 ~ 10069626 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942198.2
CGGTGAACTGGGTCACATGGGCCGCAATGAGCACTTTTACTCAAAACACAACAGTCAGCACAGCGCTACAGAGTCGACCTGTTAGTGTAAGCTATCCCTCATCTCTGGACATTCAGGTTCATTTGAATTTGGTTGTCGTTTTATCTGGAAGCTGAAAGAGTCCAGCCGTGCAGCGTTCACTATCCACGAACAAGTGGGTCGAGTCGTTTTGAATCATTCAGCATTTGTGTCGAGGAGCTGTTTAATACTCTGGGAGCTTCAACAGATGGAACAAATCTGAAGAGTAGACATTTAAACCTGGGATAtctgcctgtttttttaaatttcagagacaaaaaaacaaaaatgttcgGCGTTTAAAAACCAGTCATCACACAAGCTGGTgacattttcatacattttcataCAAAGAGCCACCAGAAAGTTTTGAACACGAAAGAAATCCAGGAGAGAAACAACTCTGTGTTGTCAGAAGACATGGAATCAACAAAGGCTGGGGGCGTTATAGCCTACATCAGCTCATCGAGTTCGGCCTCCAGCCCCGAGTCGTGCCACAGCGACAGCTCCAACAGCAGCTACCAGTTTTCATCCTCTTCACCTAGTGCGTCCTTTTCCACCCGCCCCAATGGACAGCAGGTGGACGTGGCCAACTTCTCCCAGCCTCAGAGTCACAGCACGACCAAGACGCGCTCACCATCTACCGCCAAATCTGGTATCACCAAGATCAGTGGCCTGGTGTTGCTGTGTAAAGTGTGCGGAGACGTGGCTTCAGGATTTCATTATGGTGTTCATGCCTGCGAAGGCTGCAAGGGTTTCTTCAGGAGGAGTATCCAACAGAACATCCAGTATAAGAAGTGCCTTAAGAATGAGAACTGCCCCATCATGCGCATCAACAGGAATCGATGCCAGCAGTGTCGCTTCAAGAAGTGTCTGCTTGTTGGCATGTCTAGAGATGCTGTGCGTTTTGGAAGAATACCAAAGCGAGAGAAACAGCGCATGCTGCTAGAGATGCAGAGTGCCATGAACAACATGATGAACAACAGCCAGCTGCATGGCAGCAGTCCTCCAGTTTCCAGCAGCCAGACTCAGCCTTGTCTGGCAAAGCTCGCCTCTGGGGCCACACCCCATGctcctccttccttctctcctgCCTCTTCCCCTCAAAGCAGCCAATCCGAGTTGAGCAACGATCCTGAGCCTTCGCTCCCGATGGACACAAGCCCAAGTTCTGACTCATCCAGTGCCACAGACAGTGGAGAAGAAGAGGTCATCGGCACAGGGATGAGGACAGGTCACGAAGTCGAACGCATCATGGAGGACACACACGAGGTCTGGAACCATCATAACAACATAGCTACAGTAACACGCCAGCGCCCACGTTTACACTGCTCTCCTCAGGATCCTCGTGAATCACCACAGGAAGATAATTCTCTCAGCCGGTGCCCGGTTAGAGTGAGCAACAGTGCCTCCAGTGCCCAGTGCCATGTCCAGCTGCTCGCCAATGCTGATCCCAGTCACTGTTCTGCCTCTGTTATTGGCCAGTCGCTCCGGGCGCACAACTCCAACGGAACCCGAGCCAGTGGGAGCTACGCTGGTCCAGCATGGAGTGGAGCCAACAGGATGCATCTGGTGTGTCCCATGAACACTTCTCCCTATGTGGACCCACATAAATCAGGCCACGCTATCTGGGAGGAGTTCTCCATGAGCTTCACTCCGGCTGTAAGGGAGGTGGTGGAGTTTGCCAAACGCATCCCCGGATTCAGGGAGCTGTCGCAGCACGACCAGATTAGTCTCCTCAAAGCGGGTACTTTTGAGGTGCTGGTGGTACGTTTCGCATCATTGTTTGACGTGAAGGAACGCACTGTGACCTTTCTGAGTGGGAAGAAGTACAGTGTGGAGACACTGTGCTCTATGGGTGCTGGTGACCTGCTCAACTCTATGCTGGATTTCAGCGAGAAGCTGCGTGCTCTGGACCTCAGTGAGGAGGAGATGAGCCTTTTCACTGCTGTTGTACTCGTCTCTGCAGACCGTTCAGGCCTGGAGAATGCAAAGTCAGTAGAAGCGCTACAGGAGTCACTGATCCGCGCCTTGCGCAGCCTCATCACGCAGAGCCACCCGAATGAGAGTGCCATCTTTACCAAGCTGCTTCTCAAACTGCCTGAGCTCCGCTCGCTCAACAACATGCACTCGGAGCAGCTCCTGGCCTTCAAGGTCCAGCCATGAAACGCAGTTCTTCTCCTTCTGTAACTGTGCTGTCCTTTCACCACCAGAACCTCCAGATTCTgtacaaatcaaatcaaatctttCCACCTCACAAATTGGAGGCCTGATGTAGAGGTGGAAGGGAGCAACAAGTTGAGCTCAGTGTACTGTAAAGGTGTAAGGTGTGAGTTTTGTGATAAAGTAGGactgaaaaggaaacaaaatacAGAGGGGCTGTGATTCTTGGGAGAGACTATGTGTGCGTATGCAGTCCTCTTTCAGAGGCACCTTCTTGAACTTCATTTTAGACTTAAACTGTTTAACTGTCTGTGCAATATGTGACCCATGTTTACTGTTCATGTTTTGGTCTTTTTATGGTTCGAGAGATGCTGCTGTCTACATACTGCAATGCTGTGTATGATGGTGGATATAGGTACCATAGGAAAATGTTTCTTTCACTTAAGTAGTTGGTGCCTATCACAAACCTATATTTTTTTTGGAGTATGGTAATGGCGGGATATTTCCTTACATGCTTTGTTACGCTAAACACAAGTAAAGGAAAACTAGTACCAGAGATAAGATGAATAAGATGAATGTGGAAGAAGCTGCTAAATTCAAGCTTTTTATTATAATGGGTTGTAAAATGGTGCAGTGTCACTGTTTTTACCTACAGAAAGAGATAAGAATGTTTaacagattatatatatatatatatatatatgtatttttcctAGTTGAGTACTTCTAGCTGAGTAAAAGGACGTTCATTTTTAGTTTAGCATAATGGTGCAGCTATGTATATGTTTTGTGAACAATAGGACTATATTTGGtagaattgaataaaaaaacgCTCTGGCAGTGTTTCTACGTTACAGGGATTTAGAAACAAACTTGATTAAGTTAGTAGCCTGCATGCACTGTCCAGTGATTATCAATGGGACCCAATCAAAACATTCTGAAAATTAAGTCAAACACTCCCTGATGGCTGACACTATCGGATTGTATATATAAGGACAGAATTTATCAATGCTAAAaattagaaaacatttttgtctcttttgcTGAGGGGTTAGGTATGAAAACTAGAGTGAGACATTAGTCCTGGCTGATGTTTTTTTACTTATTCAAGTAGTGATTTCAATTCTggacagatgggtgacaaattaaaggaaaaaccggtggctctgttatgctatCGGGGCATTTTGATGGCATGGTCTGGGTCTACATGTCCAGTGGGAGGGAAGGGTCATTTCCAATCAATACAAAGTCtttttctgactgatcaccttaaTGCTATGATGAAACATCTCCACCACCAACATCAAAACCTGTTGGAAGGATGGTGTTCATCCTTCCAGTACAGTTCCTGAGACTCGAACAATCTATGTCCAGGTttactgaagctgttctggcagcttgtGGCGGCCTAGCACCAAAggcactttatgttgtttttttccctttaatttgtcacctgcctgtatttcagttttgttatcttatttttcttttttctggtcAAGTATGTTCAGTACAAATCCTTGTAGAGTTATTTTTGGCTCAGTTTTCAATTAGTTGTGCAACATACAAGCATATCACATGACAGACCGAGAGGGAGCTTGGAGCAATCACAGGAGACAAACAAGGTACTTGAGCACGTATTCCATTTTCTGACTTGTGCTATCACTTGAAGAGGGATAAGACTGTGTAAGCTGAAAATATTCTTATCTGATTTTTGGTTTGACTGAAATATCAAACTTACCTCATAATGATTGTAGTGTTGTTGACACTTGATTGTATTTGCAGTGAAGAGAATAGCAGTGGCAGTGAAGATGTAGTTTTTCAGTCATAGTAGTGTTGATTACATTAAAATTTCCTTGTAGTTTGTGTCCTGAGGTACTGACTGCATTTAAGCTTCCTCTCAGTATCCATCTTGAGCATCTGTCAGCACTGGATTGCCAAAAGCTGGTCTGTACTGgtttttatttgtgaaaatgttGCAAAATACCTAGATTTATATGTGTaagatatatatacagataatatatattacatataaaataaaaactataaataaaactc
>XM_034301578.1
AGCCGGTGAACTGGGTCACATGGGCCGCAATGAGCACTTTTACTCAAAACACAACAGTCAGCACAGCGCTACAGAGTCGACCTGTTAGTGTAAGCTATCCCTCATCTCTGGACATTCAGGTTCATTTGAATTTGGTTGTCGTTTTATCTGGAAGCTGAAAGAGTCCAGCCGTGCAGCGTTCACTATCCACGAACAAGTGGGTCGAGTCGTTTTGAATCATTCAGCATTTGTGTCGAGGAGCTGTTTAATACTCTGGGAGCTTCAACAGATGGAACAAATCTGAAGAGTAGACATTTAAACCTGGGATAtctgcctgtttttttaaatttcagagacaaaaaaacaaaaatgttcgGCGTTTAAAAACCAGTCATCACACAAGCTGGTgacattttcatacattttcataCAAAGAGCCACCAGAAAGTTTTGAACACGAAAGAAATCCAGGAGAGAAACAACTCTGTGTTGTCAGAAGACATGGAATCAACAAAGGCTGGGGGCGTTATAGCCTACATCAGCTCATCGAGTTCGGCCTCCAGCCCCGAGTCGTGCCACAGCGACAGCTCCAACAGCAGCTACCAGTTTTCATCCTCTTCACCTAGTGCGTCCTTTTCCACCCGCCCCAATGGACAGCAGGTGGACGTGGCCAACTTCTCCCAGCCTCAGAGTCACAGCACGACCAAGACGCGCTCACCATCTACCGCCAAATCTGGTATCACCAAGATCAGTGGCCTGGTGTTGCTGTGTAAAGTGTGCGGAGACGTGGCTTCAGGATTTCATTATGGTGTTCATGCCTGCGAAGGCTGCAAGTGTttacaagaggaaaaaaaggaaaaaaaaaactGGTTTCTTCAGGAGGAGTATCCAACAGAACATCCAGTATAAGAAGTGCCTTAAGAATGAGAACTGCCCCATCATGCGCATCAACAGGAATCGATGCCAGCAGTGTCGCTTCAAGAAGTGTCTGCTTGTTGGCATGTCTAGAGATGCTGTGCGTTTTGGAAGAATACCAAAGCGAGAGAAACAGCGCATGCTGCTAGAGATGCAGAGTGCCATGAACAACATGATGAACAACAGCCAGCTGCATGGCAGCAGTCCTCCAGTTTCCAGCAGCCAGACTCAGCCTTGTCTGGCAAAGCTCGCCTCTGGGGCCACACCCCATGctcctccttccttctctcctgCCTCTTCCCCTCAAAGCAGCCAATCCGAGTTGAGCAACGATCCTGAGCCTTCGCTCCCGATGGACACAAGCCCAAGTTCTGACTCATCCAGTGCCACAGACAGTGGAGAAGAAGAGGTCATCGGCACAGGGATGAGGACAGGTCACGAAGTCGAACGCATCATGGAGGACACACACGAGGTCTGGAACCATCATAACAACATAGCTACAGTAACACGCCAGCGCCCACGTTTACACTGCTCTCCTCAGGATCCTCGTGAATCACCACAGGAAGATAATTCTCTCAGCCGGTGCCCGGTTAGAGTGAGCAACAGTGCCTCCAGTGCCCAGTGCCATGTCCAGCTGCTCGCCAATGCTGATCCCAGTCACTGTTCTGCCTCTGTTATTGGCCAGTCGCTCCGGGCGCACAACTCCAACGGAACCCGAGCCAGTGGGAGCTACGCTGGTCCAGCATGGAGTGGAGCCAACAGGATGCATCTGGTGTGTCCCATGAACACTTCTCCCTATGTGGACCCACATAAATCAGGCCACGCTATCTGGGAGGAGTTCTCCATGAGCTTCACTCCGGCTGTAAGGGAGGTGGTGGAGTTTGCCAAACGCATCCCCGGATTCAGGGAGCTGTCGCAGCACGACCAGATTAGTCTCCTCAAAGCGGGTACTTTTGAGGTGCTGGTGGTACGTTTCGCATCATTGTTTGACGTGAAGGAACGCACTGTGACCTTTCTGAGTGGGAAGAAGTACAGTGTGGAGACACTGTGCTCTATGGGTGCTGGTGACCTGCTCAACTCTATGCTGGATTTCAGCGAGAAGCTGCGTGCTCTGGACCTCAGTGAGGAGGAGATGAGCCTTTTCACTGCTGTTGTACTCGTCTCTGCAGACCGTTCAGGCCTGGAGAATGCAAAGTCAGTAGAAGCGCTACAGGAGTCACTGATCCGCGCCTTGCGCAGCCTCATCACGCAGAGCCACCCGAATGAGAGTGCCATCTTTACCAAGCTGCTTCTCAAACTGCCTGAGCTCCGCTCGCTCAACAACATGCACTCGGAGCAGCTCCTGGCCTTCAAGGTCCAGCCATGAAACGCAGTTCTTCTCCTTCTGTAACTGTGCTGTCCTTTCACCACCAGAACCTCCAGATTCTgtacaaatcaaatcaaatctttCCACCTCACAAATTGGAGGCCTGATGTAGAGGTGGAAGGGAGCAACAAGTTGAGCTCAGTGTACTGTAAAGGTGTAAGGTGTGAGTTTTGTGATAAAGTAGGactgaaaaggaaacaaaatacAGAGGGGCTGTGATTCTTGGGAGAGACTATGTGTGCGTATGCAGTCCTCTTTCAGAGGCACCTTCTTGAACTTCATTTTAGACTTAAACTGTTTAACTGTCTGTGCAATATGTGACCCATGTTTACTGTTCATGTTTTGGTCTTTTTATGGTTCGAGAGATGCTGCTGTCTACATACTGCAATGCTGTGTATGATGGTGGATATAGGTACCATAGGAAAATGTTTCTTTCACTTAAGTAGTTGGTGCCTATCACAAACCTATATTTTTTTTGGAGTATGGTAATGGCGGGATATTTCCTTACATGCTTTGTTACGCTAAACACAAGTAAAGGAAAACTAGTACCAGAGATAAGATGAATAAGATGAATGTGGAAGAAGCTGCTAAATTCAAGCTTTTTATTATAATGGGTTGTAAAATGGTGCAGTGTCACTGTTTTTACCTACAGAAAGAGATAAGAATGTTTaacagattatatatatatatatatatatatgtatttttcctAGTTGAGTACTTCTAGCTGAGTAAAAGGACGTTCATTTTTAGTTTAGCATAATGGTGCAGCTATGTATATGTTTTGTGAACAATAGGACTATATTTGGtagaattgaataaaaaaacgCTCTGGCAGTGTTTCTACGTTACAGGGATTTAGAAACAAACTTGATTAAGTTAGTAGCCTGCATGCACTGTCCAGTGATTATCAATGGGACCCAATCAAAACATTCTGAAAATTAAGTCAAACACTCCCTGATGGCTGACACTATCGGATTGTATATATAAGGACAGAATTTATCAATGCTAAAaattagaaaacatttttgtctcttttgcTGAGGGGTTAGGTATGAAAACTAGAGTGAGACATTAGTCCTGGCTGATGTTTTTTTACTTATTCAAGTAGTGATTTCAATTCTggacagatgggtgacaaattaaaggaaaaaccggtggctctgttatgctatCGGGGCATTTTGATGGCATGGTCTGGGTCTACATGTCCAGTGGGAGGGAAGGGTCATTTCCAATCAATACAAAGTCtttttctgactgatcaccttaaTGCTATGATGAAACATCTCCACCACCAACATCAAAACCTGTTGGAAGGATGGTGTTCATCCTTCCAGTACAGTTCCTGAGACTCGAACAATCTATGTCCAGGTttactgaagctgttctggcagcttgtGGCGGCCTAGCACCAAAggcactttatgttgtttttttccctttaatttgtcacctgcctgtatttcagttttgttatcttatttttcttttttctggtcAAGTATGTTCAGTACAAATCCTTGTAGAGTTATTTTTGGCTCAGTTTTCAATTAGTTGTGCAACATACAAGCATATCACATGACAGACCGAGAGGGAGCTTGGAGCAATCACAGGAGACAAACAAGGTACTTGAGCACGTATTCCATTTTCTGACTTGTGCTATCACTTGAAGAGGGATAAGACTGTGTAAGCTGAAAATATTCTTATCTGATTTTTGGTTTGACTGAAATATCAAACTTACCTCATAATGATTGTAGTGTTGTTGACACTTGATTGTATTTGCAGTGAAGAGAATAGCAGTGGCAGTGAAGATGTAGTTTTTCAGTCATAGTAGTGTTGATTACATTAAAATTTCCTTGTAGTTTGTGTCCTGAGGTACTGACTGCATTTAAGCTTCCTCTCAGTATCCATCTTGAGCATCTGTCAGCACTGGATTGCCAAAAGCTGGTCTGTACTGgtttttatttgtgaaaatgttGCAAAATACCTAGATTTATATGTGTaagatatatatacagataatatatattacatataaaataaaaactataaataaaactc

Function

symbol description
nr1d2b Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in cell differentiation; hormone-mediated signaling pathway; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in nervous system; optic vesicle; and pharyngeal arch. Orthologous to human NR1D2 (nuclear receptor subfamily 1 group D member 2).
nr1d2 Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription, DNA-templated. Located in nucleoplasm.

NR:

description
nuclear receptor subfamily 1 group D member 2-like isoform X1

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0009987 cellular process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0005488 binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942198.2 False 4287 mRNA 0.45 8 10055018 10069623
XM_034301578.1 True 4324 mRNA 0.45 9 10055018 10069626

Neighbor

gene id symbol gene type direction distance location
LOC113543808 rarb,LOC107103632 coding downstream 151213 9760884 ~ 9903805 (-)
adnp2b LOC108273309 coding downstream 343911 9701804 ~ 9711107 (-)
txnl4a txnl4a,txnl4a.S,txn4a,LOC106570226,LOC106570228 coding downstream 354989 9696064 ~ 9700029 (-)
atp6v1c1b atp6v1c1,LOC108273274,LOC108424992,LOC102305030,LOC102207943,LOC100703061 coding downstream 361830 9681913 ~ 9693188 (-)
si:ch211-215i13.3 NA coding downstream 376067 9672774 ~ 9678951 (-)
rpl15 rpl15 coding upstream 10860 10080486 ~ 10084170 (-)
ube2e1 ube2e1,LOC108272959,LOC105903698,LOC107743927,LOC107655879,LOC107565235 coding upstream 26498 10096124 ~ 10113933 (-)
LOC113543865 LOC108272957,LOC101471788,LOC102229941,LOC105937694 coding upstream 51917 10121543 ~ 10182766 (-)
si:ch211-30b16.2 si:ch211-30b16.2,LOC108273305,LOC108441689,LOC107569868,LOC107686956,LOC107719841,LOC107708724,LOC107693995 coding upstream 134187 10203813 ~ 10214881 (-)
cited4a LOC108273161 coding upstream 342759 10412385 ~ 10415718 (-)
G403262 NA non-coding downstream 102694 9934989 ~ 9952324 (-)
G403164 NA non-coding downstream 157894 9896896 ~ 9897124 (-)
G403134 NA non-coding downstream 191704 9863033 ~ 9863314 (-)
G403086 NA non-coding downstream 290114 9764674 ~ 9764904 (-)
G403072 NA non-coding downstream 294521 9759645 ~ 9760497 (-)
G403316 nkiras1,LOC102786732 non-coding upstream 20943 10090569 ~ 10094630 (-)
G403323 NA non-coding upstream 113211 10182837 ~ 10183568 (-)
G403324 sf3a3 non-coding upstream 119545 10189171 ~ 10191189 (-)
LOC113543816 NA non-coding upstream 432685 10502311 ~ 10507050 (-)
LOC117596479 NA non-coding upstream 433663 10503289 ~ 10503361 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 638765 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 770525 9227395 ~ 9284493 (-)
G402673 NA other downstream 893548 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 2137325 7869403 ~ 7917693 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 2778236 7254433 ~ 7276782 (-)
si:ch73-347e22.4 NA other upstream 1707743 11777369 ~ 11790179 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 2075972 12145598 ~ 12256372 (-)
G404644 NA other upstream 2361369 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 2445690 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 2500838 12570464 ~ 12570536 (-)

Expression


Co-expression Network