eepd1 (eepd1)


Basic Information

Item Value
gene id eepd1
gene name eepd1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4928478 ~ 4954246 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942235.2
GTCCCGGCTAGAGAGTGCCTGAGCTTGTTTGGTTTGAGTGTGTAAGCTCGATTCCActcaagaacacacacactctgcagtgGAGATAAAAAGTGCAGGATAGAAAGCGAGCGCGCGCTTTCCCGCATCCTCTTCATCACTCGAGCGCGGCTCATGCGAGCTGTAGAGGCTGTAGTGGTTCAGGGCTCGCGGTGTCGGTCACGGGTCACGGGTCATGGGGGGAAACCTGGGGTGCCACCGCTCGCTCCCGGCGGACCCCGCGGACGTGCGGCAGCGCGGGCGCAAGTTCAGCGCGACCTGCAGCTTTGCGCACGTCTCCGCGCACAACCCCGAGCGCCTGAACGTGAACGCGGCCAGCGAGGAGGAGCTCATGACCCTGCCGGGGGTCACCAGGGCCATCGCGCGCGCCATCGTGGAGCACCGCGCGCGCATCGGCGGCTTCAGGAAAGTGGAGGACGTGGCCCTGGTGAGCGGCATCGGCGCCGCCAAGCTGCAGCTCATCAAGCCGGAAATATGCGTGTCGAGCCGcaggaacaacaacaacgaccCGCGCAAGGAGCGCGAGCAGGAGCACCGCGCGTCCGTGGCGCACTCGTGGACGCCGTCCTCGCATCCCAACTCCCCGGCCGCGTGCAGCGAGCTGCGCCTGCCCCCCGGAGGACCCGCGCACATGGCGTCCGAGCGGCCCGACGTGCAGCCTCCGCCGTGCGCGCGCCACGGAAAGCCGGTGGTGCGCGTGGCCACGTGGGATCTGCAGCGCTGCTCCAGCGACAAAGCCAACAACCCCGGGGTCAAAGAGGTCGTGTGCAGGACCCTGCTGGAGCGCGAcATCAAGTTGCTAGCAGTTCAGGACCTGGCCGATCAGCAAGCGCTGGATAAGttttgCACAGAGCTCAATCAGCCGACTCTCTCCAGCGTGTGTAATTGGAAAGGCCCTCGTGGTGTGTGGAAATGTGCTGCTTCTGGGAAACCCACTGGAGAGTCATCTATaGGCTCAGAATATTCTGGTTTCCTCTGGGACTCCTCGGCTGGCATCCAGCTGAAAGAGGCCGTGGTTTTGGAGAGCGCTGCTGCTAACGGCAACGGGAACGACGCCCAGCCGAAAGCGTACCTTGGACACTTTTATATCGGATCATCCGAGCTCACCGTAGTGAACGTGCACCTCAAACCTCCATCGGCGCCGAAGCAGCAGAATGGGCGACACCACAAATCTGACGAGCTGAAAGCCCACAGGCTGAGCCCTGGAGTACAGGAGACTCTGAGAGGGGTGAAGAACGTGTTGGTTGTCGGGGGCTTTGGTCTTCCTCCAGACAGTGCTCAGTTTGAGCCTCTGAAGAAGGAGAAGCTGAGCGCCCTCGTGCCTTCGTCCGTCAACACCAACATCAGCACCAAAGCACCGCAGGGATCCAGCTGCCTGGACAACATCTGGGCCAGCCATAGCATCAAGAAGCTCTACACAGgTCATTGCTCTGTCACGAGGGAGGGCCTGACCAACCCCTGGATCCCTGATAACTGGTCGTGGGGCGGAGTGGCCTCGGAGCATTGCCCCATCGTGGCCGAGTTTTACACAGATTGCACAAATGAGAAGATGGTGAAGGAGCCGCTGCACAACGGAAGCAGCGTGGCAGTGGTGGAGAGGGATGACATCACACCCAAACATGAGCGGTGACCTTTAACCTCGGGCTGTGGAGACTGTCATGGTGGTATGACATCACtacagagagactgagatggACTGAGACTGTGTCTCTTCCAGCTATTGTACAGTAGAAATAATTTTGAATGTAGAGAAATAATCAGATATTTAAGGAAATGagatatatgtatgtattaaatTTTTCAAATTACACAAGTGCTAAAAACTTTTTAATGAAGTACGTGGAATAAAGCAATACTGAGAATTTAACTGCTCAACGTAATACAAATTGTATGTGTTATAGATAGAGCTGTGTGTGATATGATGTTCTTTCACCAAACCTGacagcacagaggccacacctccttctctaTGACTGAcccacagaggccacacccatttTACTaagactgttttgtttttaaggaaatggtttcctctgacttctctaTAGTAGGACTTCTCTATAGTTACATccttccactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttacacaccCATGGGTACACAATGCGGAGATAAATGTTCAGTCAACAGAtaaacatttgtgtaaattttctGTGTAACTTTTCctcattccataacattaatatGTAACATATCATTGCAGCCTCATATTTTAAGTCCCACTCAATCAGCACTGCTAAACATTTGCAATTACAGAAACAAAGTCAGCTTAAGTGACGAAAGTCAACTTTGTCACTTAAAGTCTAGCGTCAACTAATGAATTCATCATTAGCAtgagtttttacatttataccaTCAAACATGTAACATCAAATCATTTAGGAAACATTTTGCCATCTGTAGAAAATCTCCATCCACAAAAAATGCAGGGAATGGACAATTAAAGGTCAAACAGCAAAGCCAAGGTTGGGAAATTACAGACACGCTGATGAGAGTCAAAAATGCAAATGCCTTCTCATACAAAATTTTATAGCACTTGAGTGTACAGACAGAGTTTAGTTCAGGTCACTGTTGCTGATGATGTGAATAACCTGTGCACGTGAAGAGCCAATGCTAAATTTGGtctatataaattaataaataaataacaggagTGGAGTAGCAGCGCCCACATGTGTCTGAGTTTAAGAATCTAGATTTTATACTCAGTTTGTCTTTTTACAGTGAatgtaaaactgcacaaagaCACATATCCCtctcagtgaagcatggtggtggtatcATCATCTTGAGCTTTACCCTTGGATGCTtgctgactaatcccctctttaggGACTCTATTCTCTTTCCACTCTTTCAGTGAACGGACTCCTCTAGGCGGCGTCACGGTTATGACAATTTtcaaataatggatttaatgatgAGCCATAGCATttcataaccaaaccctgacACTTTCCCAGAACGTTGGActcctggacttgttttggTAGCTTTGCTGGTCTTCacgatgctgtttgtttaggaaTGTTCTCTCACAAACTCTGAGGCttttatattgcatttataTTGACATCAGGGGACAATATAATTGTACACAGATGGACTAATTACACAACttctaatttaggggtttcacatcaacagggttgaatacttatgcaataaCGACTTTGATGCAATAACAACTTATGCAATAACAACTTTTTCTCCACTTCAGcattatgggttattttgtgtagattcgtGACGTTATctccattaaatccatttcagttccaggttgtaaaactacaaaatgtggaaaagttcaatgGGTGAATTTATGCATCTACTGAACTGAActggtgtgtgtggagtgagaaCGCCATCCAGTGGCAGCAGGACTGCAGGGAAGCAGTGAGCTGGTCATCAGATGCCTGCAGTTTACTGAGCTCTGAAATTAACATTAGTGCCAAAAGGAGGAAAATATTAGAATTCCCAGCCCCAAGAAGGATAACACACCTTAgtaattattaaacatgaattttaaatgaCAGATTCACCTACAGTTATGTGGAtgtatgtaaagtgtgtgtgggtgtgtgtgtgtatgtaataattTGGGGCAAACTGACACTTTATGGACAGGTGGTATtgctttttgtgcttttttctctcacactaATGGCATTTCTAATGCTAATAACACCAGTGAGCAAAATACCTCAGGGAAAAAGCCTTGTTAGCTGTTTGTTGCTGTGTTTCatcattaactttttttctttttcacatccCATTAAATTGGTCTGGAAAAGCCCTAAATGTCTCTTTCACAACCGTATACTGACAGGCTTCAAACCTCAACTGAAACCCCACATGAACCAGCAAGCTAGCCACAACTGTTATAGCCTTAGGAAAGATGTTGACATTTCTGAAGGTTTTCAGTCACAGACATCTTATGTACAATGATATAATGACATGAATGAGTTCAGAAAAGGGTGATTTACAAAGATTatttttgcaattt

Function

symbol description
eepd1 Predicted to enable DNA binding activity. Predicted to act upstream of or within DNA repair. Predicted to be anchored component of plasma membrane. Is expressed in yolk syncytial layer. Orthologous to human EEPD1 (endonuclease/exonuclease/phosphatase family domain containing 1).

NR:

description
PREDICTED: endonuclease/exonuclease/phosphatase family domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942235.2 True 4097 mRNA 0.47 7 4928478 4954246

Neighbor

gene id symbol gene type direction distance location
snapin snapin,LOC106569889 coding downstream 17501 4908526 ~ 4910977 (-)
si:dkey-222b8.1 si:dkey-222b8.1,LOC108273360,LOC108441801,LOC107672874,LOC107698642,LOC103033551,LOC107550085,LOC107748351,LOC105906332 coding downstream 23083 4884598 ~ 4905395 (-)
syt11a LOC108272614 coding downstream 50834 4857220 ~ 4877644 (-)
rit1 rit1,LOC107563922,LOC105906336,LOC107676106 coding downstream 77910 4840903 ~ 4850568 (-)
pex11b pex11b coding downstream 88690 4836850 ~ 4839788 (-)
eya3 eya3 coding upstream 86040 5040286 ~ 5052042 (-)
si:ch211-195b13.1 si:ch211-195b13.1,LOC108273319,LOC103036792,LOC108411161,LOC105892152,LOC104955017 coding upstream 99519 5053765 ~ 5059583 (-)
LOC117596451 LOC108261350,LOC108261581 coding upstream 166024 5120270 ~ 5127437 (-)
LOC117596409 NA coding upstream 196842 5151088 ~ 5152608 (-)
si:dkeyp-92c9.2 LOC108272361,LOC107571465,LOC107598237,LOC108413164,LOC107731579,LOC107702702,LOC107738595 coding upstream 254907 5209153 ~ 5213318 (-)
G400500 NA non-coding downstream 9595 4911350 ~ 4918883 (-)
G400503 NA non-coding downstream 44475 4881706 ~ 4884003 (-)
G400494 NA non-coding downstream 94495 4833754 ~ 4833983 (-)
LOC113543895 NA non-coding downstream 111183 4812661 ~ 4817295 (-)
G400477 NA non-coding downstream 142821 4779611 ~ 4785657 (-)
G400517 LOC108273316 non-coding upstream 57941 5012187 ~ 5012795 (-)
G400501 LOC108272940 non-coding upstream 76613 5030859 ~ 5035922 (-)
LOC113543905 NA non-coding upstream 285853 5240099 ~ 5242052 (-)
G400622 NA non-coding upstream 324657 5278903 ~ 5279314 (-)
G400676 NA non-coding upstream 416826 5371072 ~ 5380937 (-)
polr3gla LOC108272317,LOC108415116 other downstream 293421 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 590051 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 768728 4150899 ~ 4159750 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 795556 4120397 ~ 4132922 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 1694154 3224065 ~ 3234324 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 6856 4961102 ~ 5008464 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 173989 5128235 ~ 5140380 (-)
G400815 NA other upstream 633152 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 1218742 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 1417371 6371617 ~ 6374500 (-)

Expression


Co-expression Network