rpl15 (rpl15)


Basic Information

Item Value
gene id rpl15
gene name rpl15
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 10080486 ~ 10084170 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942240.2
attgattgattgattgattgattgcagTTGAGGCATCATGGGTGCGTACAAGTACATGCAGGAGTTATGGAGGAAGAAGCAGTCGGATGTGATGCGCTTTCTGCTGCGTGTCCGTTGCTGGCAGTACCGCCAGCTCTCCGCCCTGCACCGCGCTCCCAGACCCACCAGACCTGACAAGGCACGGAGACTGGGCTACAAGGCCAAGCAAGGTTACGTCATCTACCGAGTGCGCGTGCGCCGTGGTGGCCGCAAACGCCCCGTGCCCAAAGGTGCCACATACGGCAAGCCCGTGCACCATGGTGTCAACCAGCTCAAGTTCGCTCGCAGCCTGCAGTCCGTCGCTGAGGAGCGTGCTGGCCGTCACTGCGGTGGTCTCCGTGTGCTGAACTCCTACTGGGTGGGCGAAGACTCCACATACAAATTCTTCGAGGTGATCTTGGTCGACACCTTCCACAAGGCCATCAGACGCAACCCCGACACACAATGGATCACAAAGGCCGTGCACAAGCACAGGGAAATGCGCGGCCTCACGTCAGCCGGCAAGAAGAGCCGTGGTTTGGGCAAGGGCCACAAGTTCCACCTCACCATCGGTGGTTCTCGCCGTGCGGCCTGGAGGAGGCGCAACACTCTGCAGCTGCACCGTTACCGCTAAAGAGTGTGATGCACATCTGTACATTCATCAGAATAAAGTACCTTTATATGGTCCAC

Function

symbol description
rpl15 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 12. Orthologous to human RPL15 (ribosomal protein L15).

NR:

description
PREDICTED: 60S ribosomal protein L15

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02877 RP-L15e, RPL15; large subunit ribosomal protein L15e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942240.2 True 708 mRNA 0.58 3 10080486 10084170

Neighbor

gene id symbol gene type direction distance location
nr1d2b nr1d2,nr1d2b,LOC108273061,LOC106570286 coding downstream 10860 10055018 ~ 10069626 (-)
LOC113543808 rarb,LOC107103632 coding downstream 176681 9760884 ~ 9903805 (-)
adnp2b LOC108273309 coding downstream 369379 9701804 ~ 9711107 (-)
txnl4a txnl4a,txnl4a.S,txn4a,LOC106570226,LOC106570228 coding downstream 380457 9696064 ~ 9700029 (-)
atp6v1c1b atp6v1c1,LOC108273274,LOC108424992,LOC102305030,LOC102207943,LOC100703061 coding downstream 387298 9681913 ~ 9693188 (-)
ube2e1 ube2e1,LOC108272959,LOC105903698,LOC107743927,LOC107655879,LOC107565235 coding upstream 11954 10096124 ~ 10113933 (-)
LOC113543865 LOC108272957,LOC101471788,LOC102229941,LOC105937694 coding upstream 37373 10121543 ~ 10182766 (-)
si:ch211-30b16.2 si:ch211-30b16.2,LOC108273305,LOC108441689,LOC107569868,LOC107686956,LOC107719841,LOC107708724,LOC107693995 coding upstream 119643 10203813 ~ 10214881 (-)
cited4a LOC108273161 coding upstream 328215 10412385 ~ 10415718 (-)
stmn1a stmn1,LOC108415666,LOC101477131,LOC102781761,LOC100709328 coding upstream 907542 10991712 ~ 10996996 (-)
G403262 NA non-coding downstream 128162 9934989 ~ 9952324 (-)
G403164 NA non-coding downstream 183362 9896896 ~ 9897124 (-)
G403134 NA non-coding downstream 217172 9863033 ~ 9863314 (-)
G403086 NA non-coding downstream 315582 9764674 ~ 9764904 (-)
G403072 NA non-coding downstream 319989 9759645 ~ 9760497 (-)
G403316 nkiras1,LOC102786732 non-coding upstream 6399 10090569 ~ 10094630 (-)
G403323 NA non-coding upstream 98667 10182837 ~ 10183568 (-)
G403324 sf3a3 non-coding upstream 105001 10189171 ~ 10191189 (-)
LOC113543816 NA non-coding upstream 418141 10502311 ~ 10507050 (-)
LOC117596479 NA non-coding upstream 419119 10503289 ~ 10503361 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 664233 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 795993 9227395 ~ 9284493 (-)
G402673 NA other downstream 919016 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 2162793 7869403 ~ 7917693 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 2803704 7254433 ~ 7276782 (-)
si:ch73-347e22.4 NA other upstream 1693199 11777369 ~ 11790179 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 2061428 12145598 ~ 12256372 (-)
G404644 NA other upstream 2346825 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 2431146 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 2486294 12570464 ~ 12570536 (-)

Expression


Co-expression Network