rit1 (rit1,LOC107563922,LOC105906336,LOC107676106)


Basic Information

Item Value
gene id rit1
gene name rit1,LOC107563922,LOC105906336,LOC107676106
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4840903 ~ 4850568 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942249.2
CCGCGTCAGTGGTTCGTGTctatgtgtctatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtatgagtgtgtgtttacacttgGGCAGTATTTTGCCAGTTATCAACTTTGATCAAAAATGATCACATGCATTGATATAAAATTAACAATGACGACAGAAATACTGTGACAAAAGCTGTGTGGATGGAGTCTTCGCGGGGGGTTGGCGGTCTTTCCCGCGAGTATAAGCTGGTAATGCTGGGTGAGGGAGGAGTGGGTAAAAGCGccatCATCATGCAGTTTATCAGTCACCGGTTCCCTGAGGATCATGACCCTACTATAGAGGACGCCTATAAGACGCAGATCCGCATTGACGACGAGCCGGCGAACCTGGACATCTTGGACACAGCAGGACAGgctgaATTCACAGCCATGCGTGATCAGTACATGCGTGCTGGCGAAGGCTTCATCATTTCGTACTCCATAACGGACCGGCGCAGCTTCCAGGAGGCTCGCCACTTCAAGCAGCTGATCTGCCGCGTGCGCCGCACTGTGGACACGCCAGTGGTGCTTGTGGGAAACAAATCTGACCTCGCACACCTgagacagGTGACAGTAGAGGAGGGAAAGGAGCTGGCGAGGGAGTTCCAGTGTCCATTTTTCGAGACGTCCGCAGCGTTCCGTTACTACATCGACGAGGTTTTCGCCGCTCTGGTGCGTCAGATCCGTCAGCGCGAAGCCGAGGTGGTGCGGAGCGGAGAGAGAAAGACGCGACGCAGCCGGTCGCTCTGGAGCCGCCTTAAAGCGCCCTTTCGCAAGAAACAGCACTCCGAGCATTGAGGTGGCTGATGGGATACCGCCGTCCTCCACGAAGAGGAGGAAATTACTGTTCTGGTTTTCTCGTCTGTAAACCTGTTACTTCCACCCTCTAGAGAGGTGGTTTGTGAACTCTTAACCTAGATAGTTTATTACATGATTGATTTCGATTAAGCACTCTGAATCGTTTGGTTATGTTCGATCAGACACCAGCCTTCTATGTGCAGGACACACTTACAGCCACGGTATATCGGCTACTTACTGTTATCTTTACACGAGGACTATAGGTGGACTTCTTCATAATACTGTATTTAGTGAAACGTATTAAACTTGACATTAGTTACAGGGAGCATAGCTTTTGATTTTGACTTTCAGGAGAACTGTAGTACCTCCAATTCTTAACCGATGGGACGAAATGAGAAGGTAGTGGAGATGTGAGGCGGGTTTAGGAACTGATATGAAGACTGAAAGGTTATACCAGGGTCTGAAAGGACATCGTTTTTCTCCACCAACCACTGAGCAGTAAACGAGAATATATTTAGCCCGACTGTCCCTCAATTCTGGGCCTCCTCCATTGTAATAAAACTCTTATTACAGTCATTGTGTCATCACACAGTCATTCTAAATGCTGAGCTGATAATGTTGGTTTAAGACGCACTGGATTTTGCTTACATCCACATCAGATCAGTCACACTATTtcctgaaatatatataattgtattgtTTTACTGTTAATTTTAACAAACGATTCAATTCTCTGGTGCGTGTAGTCTGAAGTTTCTttagttccccactcacaactttagttcgtACCTTTAGatgtgttttggaaaaaaattttACTGTAGTTTCATCTTATCGTGTCATTTACAATCTCTCATTAAATATATGGTGAGGGTATATAGCTTTGAACAGTTAGCTATATACTTGCCTAGCTTGCctagcatgtaacatgtaacacaTACAGTTTTCATACTGATTAGTGCTTTATtcaatttgtgtttaactagttagcatTTTCTCatcagagctaaaaaaaaaaaaaaaaacacaggacaGTGAACATCCACAAGCAATAACAGTATTGatcgatacacacacactacagacaaacTACAAACAAACTTGATGCTTGTTAGTGTGAACTTCGGGTAAAGTATTGACTATCAATCAAAGTCGTAGAGCAATTAGGGATTGACTTTTTGTTGCACTTTCTAGTTTGACATTTGCAGTGAGATcgacagaaaatcagaaaaacaggaaaaaaactaACTGCCAAGGTGGAGAACTAAGGTGGAGGTTTCAGACCCTGATACCATAGTTCATAGTGGGCTTCAGATTTGCCTGAAAAGAATTTTAAGACTGTTTAGAGTATGTGAggaaaagagatggagagatggagagagagatgtagttTCAATAATACACAGGCTGTGTTCAATAGGTGGAAGGATCGTATGCAGTAGAATAATGGATTATGTAATGTTTTCTTTCATGCTGGTTCTAGTTTTTGTCTTGGTTGTGTTTGCTTTGCAGATGTGGATCACAGTTTTGCAGTTCAGGTTTAAAGGACTGTAGGTAATATGGTTTAAATCCTAAATAGCTCCCTACAGGGCACTACAATATAGTGTAGAAGCCACAATATCAAACCCTGTGCACTTAAATAGGAAGTAGGGAGTCATTTGGCCTGAGGCTCATTTGCAAAGTAGTGTTATTTTTGGCGTAGAacagtgcaacacacacactgggaaaGTCCAGAGACACACAGCGTAGGGACGCACATTATGAACTCTAAGATCATGCTATGATTCTGGTATGTTGGTAGCTCCTTGGTgttcacagtttaaaaaaaaacaaacaaaccaaacaaacagcatttgtttAAAAGGCATGATTCATCCAAACACACTGGAACTCATCTCACACGTCTGGGATTAGTCATGATGAGAGTAGTCACagcacacaataacacatttaGGGATTAGTAACATGCTCATTATGCAGCCGGTCGGTATTTCAAACGCCAAGGACGTTATAAAGATTAGCCAACGATGTACTGTGCAGCTCTACCAGGACTCGAACCTTGTCTTTGCATTCATACATAGCAGCTCTTCCTGTAGTTAAGTACATACAGGACTGACTTCTTCTAGATGGCGTACAAATGTGACTCCTTtatagttttcatttttatcaatGTTGTGCAATTACTACACGTAAAATCTAAATGGTATGTCTGATTATTgttaggggttttttttttgtaattgtgagatttttttttcagttgtgtgATCATGAATACTATATTTtccttaatttattttcatcagaGATTCTTGAATAAAATGGGCATAGCTGAGTTTTCCCAAGAA

Function

symbol description
rit1 Predicted to enable GTPase activity; calmodulin binding activity; and guanyl ribonucleotide binding activity. Acts upstream of or within embryonic viscerocranium morphogenesis and heart development. Predicted to be located in membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in Noonan syndrome 8. Orthologous to several human genes including RIT1 (Ras like without CAAX 1).

NR:

description
PREDICTED: GTP-binding protein Rit1

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07832 RIT1; Ras-like without CAAX 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942249.2 True 3178 mRNA 0.42 6 4840903 4850568

Neighbor

gene id symbol gene type direction distance location
pex11b pex11b coding downstream 1115 4836850 ~ 4839788 (-)
sema4ab LOC108272624 coding downstream 93065 4709738 ~ 4747838 (-)
si:dkey-81h8.1 LOC108272626,LOC103028165,LOC107702549,LOC107672832,LOC107710627,LOC108442974 coding downstream 134470 4694466 ~ 4706433 (-)
si:dkeyp-92c9.4 NA coding downstream 149534 4667787 ~ 4691369 (-)
mtx1b mtx1b,mtx1,LOC108272909,LOC103026555,LOC108410892 coding downstream 287537 4534996 ~ 4553366 (-)
syt11a LOC108272614 coding upstream 6652 4857220 ~ 4877644 (-)
si:dkey-222b8.1 si:dkey-222b8.1,LOC108273360,LOC108441801,LOC107672874,LOC107698642,LOC103033551,LOC107550085,LOC107748351,LOC105906332 coding upstream 34030 4884598 ~ 4905395 (-)
snapin snapin,LOC106569889 coding upstream 57958 4908526 ~ 4910977 (-)
eepd1 eepd1 coding upstream 77910 4928478 ~ 4954246 (-)
eya3 eya3 coding upstream 189718 5040286 ~ 5052042 (-)
G400494 NA non-coding downstream 6920 4833754 ~ 4833983 (-)
LOC113543895 NA non-coding downstream 23608 4812661 ~ 4817295 (-)
G400477 NA non-coding downstream 55246 4779611 ~ 4785657 (-)
G400432 NA non-coding downstream 277539 4562211 ~ 4563364 (-)
G400431 txnip,LOC107702541,LOC107731569,LOC108273074,LOC105012721,LOC105901470 non-coding downstream 278883 4558488 ~ 4562020 (-)
G400503 NA non-coding upstream 31138 4881706 ~ 4884003 (-)
G400500 NA non-coding upstream 60782 4911350 ~ 4918883 (-)
G400517 LOC108273316 non-coding upstream 161619 5012187 ~ 5012795 (-)
G400501 LOC108272940 non-coding upstream 180291 5030859 ~ 5035922 (-)
LOC113543905 NA non-coding upstream 389531 5240099 ~ 5242052 (-)
polr3gla LOC108272317,LOC108415116 other downstream 205846 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 502476 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 681153 4150899 ~ 4159750 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 707981 4120397 ~ 4132922 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 1606579 3224065 ~ 3234324 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 110534 4961102 ~ 5008464 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 277667 5128235 ~ 5140380 (-)
G400815 NA other upstream 736830 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 1322420 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 1521049 6371617 ~ 6374500 (-)

Expression


Co-expression Network