LOC113543800 (LOC108272740,LOC108411932)


Basic Information

Item Value
gene id LOC113543800
gene name LOC108272740,LOC108411932
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 6118091 ~ 6124793 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942262.2
CCACGTCACACGTATCATATGACAATGTTCCGGATGAGAATGTGAACAAGCGACGGTTTTCTTCAcgctgtttttaataaaaaaccgACGGCGTGTTTAGAGCTATAGCGAACTTTCAGTACACAAATAAGTACCAAAAACCCAGGGAGAGAGGCAGGatggatttatttctgtatctgAGATTAATCTGGATGTTTCTGCTGGCTTCTGCACTGCGCTCAGAGATGCAGATCAAGCCACTGATTTATGATGAGCAGTTGCTCTGGGTGAGCAACGGAGCGGGCGAGGTGAACACGTATCGTATCCCTCTGCTGACCTTCACTTCTCGAGGCAGCCTGCTGGCCTTCACTGAAGCCAGGAAAGACTCGTCAGGTGACATTGGGGCAAAGTTTATCGCAATGAAACGCTCCATAGACCGAGGAGCTACCTGGTCTCCTACATCCTTCATAGTGGATGATGGCATTCTGGTCGATGGCTTGAACCTTGGCTCGGTTGTAGTGGATGAGCAAACACAGTCAGTGATGCTGATCTACTCTCTGTGCTTCCACCAATACCAGTGCAGCACCTCCAGCACCATGTTAGTGGAGAGTCTGGATGATGGTCTGACCTGGAACGCTCCTCGCAATCTCTCTGTCCAGCTCGGGGTGAAGAGCTTCGCCCCTGGGCCGGGATTCGGCATTCAGAAACGCTTGAGTCCAGCAGCAGGCCGTTTGGTGGTGTGTGGTCACGGCACCATCGAGGGCGACGGGGTTTTCTGTATCCTGAGCGACGATCACGGGCGCACATGGAGGAACGGAGGCTCACTGAAGAGCATCCCTTATAACCAGCCCAAACAGAGCCAGGACTTCAACCCTGATGAGTGTCAGCCGGTGGAGATGCAGGACGGCAGCATCATGATCAACGTGCGGAACCAGAACAACTACCACTGCCACTGCAGGATGGTGGTGCGGAGCCTGGACGGAGGAGAGACTCTGCCCGTGGAGGAGCTGAGGTTCGACCACACGCTGGTGGATCCCGTGGTGGCGGCTGGAGCACTGCAGAAGGAGGAAGTGCTGTACTTCAGCAACCCGGCCAACTCCCAGAAAAGGGTGAACATGACTCTCCGTTGGTCTTTAACTAACGGGACGACGTGGGAAAACGAGGCCATGCAGATCTGGGCAGGGCCAAGCGGCTACTCCTCCATGACGTCTCTCGTCAGCAACTCCGTCGAGGATAAGAAATACATCTACCTCATCTATGAGAAGGGCCACAAAGAATCCATTGAGACCATCTCTCTCGCCAAAATCCACCTGTACGGCGGCAGGTAGAGCGAGAGCACAGTGCGCTGCGGGAAAGGAAAAGGGAAACAGAAGtgactatatttattaaagatcgCACAAAATTCATGAGTGGAGGAAAGCTGTGATCTGAGTTTGCAGTAAATTGCTGAGGTTTATCTGCTTGCTGTTTGCCACACGTGACCAAGGAGTGTAGGTGATGAATGATTTTGTATAATTCcaccttttaaaaataacaaatgatCCAGACTCATTGTACACGGacaggaaaaatggaaaaagtccTGGAAACTGCCCGATCGACTGTCTTCCAAACCTACAGACACCTGAAGTCTTAAGAGAAGATTCAGAGCTACAGTAGGTTTATGGATAGCCATTTAAAATGATTGATAAATTTTGTTAATCATTACTTTTTGAACCTAATAGTCACTTTATTCTTGGTTAGAAAGTTATTTTGGGTTTTATTATTGTCCTCATTATTCCAGTTTACCTCAAAACAAATCTGTGCACataataatctatttatttttattacactaACACATGTTTCTGTGTGAACTCATGAACCACCCagtgataagaaaaaaaaatccaatcagCACGTTATATCACATGACGGTCAGTAGCATCTGGTGTAGTCGGTCACATGCGCTTGCTGAAGTGTTTACAGATTTGAACTCTGTGAATGAGTTCATCGTCTCAGGTGTCTTTTGTCCTCTGGCTTTTTCTTTTGAACATTATAGTTTGTGTTGAAGTGGTAAGGACTCTTCACACAGTAATGGATTTTAGGAATTATAATGTACAACAGAATGTGAATGAAAACCATTATACTTAGTATCTCAAATAAATGTACATGCCATTCtagattttatattaaacaaatttttttca

Function

GO:

id name namespace
GO:0005764 lysosome cellular_component
GO:0004308 exo-alpha-sialidase activity molecular_function

KEGG:

id description
K01186 NEU1; sialidase-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942262.2 True 2168 mRNA 0.46 6 6118091 6124793

Neighbor

gene id symbol gene type direction distance location
neu1 LOC108272741,LOC103030882,LOC108411940,LOC108411932 coding downstream 3656 6109273 ~ 6114435 (-)
prrc2a prrc2a,LOC103472915,LOC104953786 coding downstream 12758 6084909 ~ 6105333 (-)
csnk2b csnk2b,LOC102207154,LOC100710962,LOC101175345,LOC102778826,LOC106573472 coding downstream 35907 6075576 ~ 6082184 (-)
dtnbp1b dtnbp1b,LOC108272579,LOC107754801,LOC107731565,LOC108435503,LOC107568291 coding downstream 271813 5813904 ~ 5846278 (-)
pard6gb LOC108272576 coding downstream 519728 5559980 ~ 5598363 (-)
prrt1 prrt1,LOC108272790,LOC107694357,LOC107584308,LOC107595589,LOC107677474 coding upstream 13740 6138533 ~ 6149189 (-)
skiv2l skiv2l,LOC107754802,LOC107677455,LOC107711323,LOC107694354 coding upstream 26059 6150852 ~ 6171006 (-)
LOC113543872 zbtb12,zbtb12.2,LOC107694350,LOC107584307,LOC107595591,LOC107711327 coding upstream 51061 6175854 ~ 6183941 (-)
sacm1la sacm1l,sacm1la,LOC108273174,LOC107677458,LOC107711326,LOC107694349,LOC107584306,LOC107754789,LOC105904713 coding upstream 64299 6189092 ~ 6208987 (-)
gabbr1b gabbr1,LOC107584305,LOC107677456 coding upstream 103060 6227853 ~ 6337451 (-)
G401196 NA non-coding downstream 96326 6021554 ~ 6021765 (-)
G401106 NA non-coding downstream 146917 5907147 ~ 5971174 (-)
G400913 NA non-coding downstream 306079 5811344 ~ 5812012 (-)
G400826 NA non-coding downstream 530710 5583555 ~ 5587381 (-)
G400676 NA non-coding downstream 737154 5371072 ~ 5380937 (-)
G401243 NA non-coding upstream 63180 6187973 ~ 6188409 (-)
G401259 NA non-coding upstream 122663 6247456 ~ 6250036 (-)
G401388 NA non-coding upstream 234961 6359754 ~ 6359977 (-)
G401403 NA non-coding upstream 280513 6405306 ~ 6405878 (-)
LOC113543850 NA non-coding upstream 310738 6435531 ~ 6437074 (-)
G400815 NA other downstream 528344 5587398 ~ 5589747 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 977711 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 1109627 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 1483034 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 1779664 4295216 ~ 4338427 (-)
G401205 nelfe other upstream 48195 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 246824 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 1129640 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 1744610 7869403 ~ 7917693 (-)
G402673 NA other upstream 3019077 9143870 ~ 9161470 (-)

Expression


Co-expression Network