neu1 (LOC108272741,LOC103030882,LOC108411940,LOC108411932)


Basic Information

Item Value
gene id neu1
gene name LOC108272741,LOC103030882,LOC108411940,LOC108411932
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 6109273 ~ 6114435 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942263.2
GAGTGTGTTGAATGTGAAACCGGTTCTCTGAGTGTCACACGCGGTGTGTATCCGCGTTCCTGCGGGTTTTTCTGTCCAGGTGTAGTAAAGCAGGGAAGTCTCTTTGCTCGACCTTTCAGTCATGTGTGTTCAGACATGAAGCTGTccgtgtgctgctgctgctgctggatgtTTTGGGGCTGTGTTGCTGTCGCAGGCGATGTCAAGATCAATCCTATTATTACGGAGGAGCAGTTGCTGTGGGTGGGCGGCGGGGCCGGGATGGTGCACACATACCGGATTCCCCTCCTGAGCTTCACCCCCCGCGGACATCTGGTTGCGTTTGCAGAGGCTCGAAAGACATCCTCAGGTGATATGGAGGCCAAATTTATAGCCATGCGACGCTCAACAGACAAAGGAGCTACGTGGTCTCCCACTACCTTCATAGAGGACGATGGGATTCACACTGATGGCTCAAACTTAGGCTCTGTGGTTGTGGATGAAGAAACAGGATCGCTGATGCTGATCTATTCTCTGTGCTTCTACCGCTATCAGTGCAGCCCTTCTAGCACCATGTTAGTGGAGAGTCTGGATGATGGTGTGACCTGGAGCGCTCCTCGCAATCTCTCTGTCCAACTTGGGGTCAAGAGCTTCATCCCAGGGCCGGGATTTGGCATTCAGAAGCAATATCCTCCTGCGAAGGGGCGTTTGGTGGTGTGTGGTCACGGCACTATCGAGGGCGACGGGGTTTTCTGTATCCTGAGCGATGATCACGGGCGCACATGGAGGAACGGAGGCTCACTGAAGAGCATCCCTTATAACCAGCCCAAACAGAGCCAGGACTTCAACCCTGATGAGTGTCAGCCGGTGGAGATGCAGGACGGCAGCATTGCGATTAACGTGCGGAACCAGAACAACTACCACTGCCGCTGCAGGATGGTGGTGCGGAGCCTGGACGGAGGAGAGACTCTGCCCGTGGAGGAGCTGAAGTTCGACCACACGCTGGTGGATCCCGTGGTGGCGGCTGGAGCGCTGCAGAAGGAAGGACTGCTGTACTTCAGCAACCCGGCCAACTCCCAGAAAAGGGTGAATCTGACTCTGCGCTGGTCTCTGACTGATGGTAACTCATGGGAAAAAGAGACTTTTCAGATCTGGGAAGGGCCAAGTGGTTATTCCTGTTTAACATCTCTCAAAGATGACAAAAAATACATCTTTGTCATATATGAGAAAGGCCATAAAGACTATTGCGAGACCATCTCTTTAGCAAAAATCAGTCTGTATGGTGGCATGTAGAAGCCAAACTTTGTGCACAGCTCTAGAACCCAACATGACCAGTGTGTGACTAGCATTGTTAATGAagcatttctgaaatacttcaTGACTTGACCTGGCTTAGCTCTTCACCTGGGATTATTTGTCTAACCATGCAGTTCACACTTCTTCTCTACAAACCTCTTCTCTAAGTCTCTGACAACTCAACTGCTTTGGATGTTGATGATTGACAAGATTTGACatgttgtattatttttagtattctGTCATCACCTTCTGTAATTCAGTCTCAATCTTATAACTCACAGTATAGATCCCCCAACCcccaaataatcaacaatattATGAAGCATGAAACATGACAATTCagtggtgagggaatgactgtttatcacggctataacacaagtgacaacaggaactaacttgtctctcagaccttccacaacattaaatctaactactaatctaatctaataattgtaattggtggcaaattgctgtggtgtaagcagaataacacactccagaccacgTTTTTATGcgaaaataatgcattttgagGAGGTAGCGGAACTCCACTTGCGCGTTGTGGCACATCACACCCCCACAGTGTAATCCACGGTGTGCAttgtttttgtataacagcatggtctgtcttgttttattcttttcttaacATATACAGTGATCAATATTAAAAGCAATATGGCCttgaaaatgtatgtaatgtgtatttGAAGGAGATTAAAATTGAAGGAGACTGATTAGTGCTTGAAGTTGATGTCAATGACCAACAATAAACtgcttaaataaaa

Function

NR:

description
sialidase-1-like

GO:

id name namespace
GO:0005764 lysosome cellular_component
GO:0004308 exo-alpha-sialidase activity molecular_function

KEGG:

id description
K01186 NEU1; sialidase-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942263.2 True 2069 mRNA 0.47 6 6109273 6114435

Neighbor

gene id symbol gene type direction distance location
prrc2a prrc2a,LOC103472915,LOC104953786 coding downstream 3940 6084909 ~ 6105333 (-)
csnk2b csnk2b,LOC102207154,LOC100710962,LOC101175345,LOC102778826,LOC106573472 coding downstream 27089 6075576 ~ 6082184 (-)
dtnbp1b dtnbp1b,LOC108272579,LOC107754801,LOC107731565,LOC108435503,LOC107568291 coding downstream 262995 5813904 ~ 5846278 (-)
pard6gb LOC108272576 coding downstream 510910 5559980 ~ 5598363 (-)
bloc1s4 LOC108272578 coding downstream 550262 5550378 ~ 5559011 (-)
LOC113543800 LOC108272740,LOC108411932 coding upstream 3656 6118091 ~ 6124793 (-)
prrt1 prrt1,LOC108272790,LOC107694357,LOC107584308,LOC107595589,LOC107677474 coding upstream 24098 6138533 ~ 6149189 (-)
skiv2l skiv2l,LOC107754802,LOC107677455,LOC107711323,LOC107694354 coding upstream 36417 6150852 ~ 6171006 (-)
LOC113543872 zbtb12,zbtb12.2,LOC107694350,LOC107584307,LOC107595591,LOC107711327 coding upstream 61419 6175854 ~ 6183941 (-)
sacm1la sacm1l,sacm1la,LOC108273174,LOC107677458,LOC107711326,LOC107694349,LOC107584306,LOC107754789,LOC105904713 coding upstream 74657 6189092 ~ 6208987 (-)
G401196 NA non-coding downstream 87508 6021554 ~ 6021765 (-)
G401106 NA non-coding downstream 138099 5907147 ~ 5971174 (-)
G400913 NA non-coding downstream 297261 5811344 ~ 5812012 (-)
G400826 NA non-coding downstream 521892 5583555 ~ 5587381 (-)
G400676 NA non-coding downstream 728336 5371072 ~ 5380937 (-)
G401243 NA non-coding upstream 73538 6187973 ~ 6188409 (-)
G401259 NA non-coding upstream 133021 6247456 ~ 6250036 (-)
G401388 NA non-coding upstream 245319 6359754 ~ 6359977 (-)
G401403 NA non-coding upstream 290871 6405306 ~ 6405878 (-)
LOC113543850 NA non-coding upstream 321096 6435531 ~ 6437074 (-)
G400815 NA other downstream 519526 5587398 ~ 5589747 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 968893 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 1100809 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 1474216 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 1770846 4295216 ~ 4338427 (-)
G401205 nelfe other upstream 58553 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 257182 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 1139998 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 1754968 7869403 ~ 7917693 (-)
G402673 NA other upstream 3029435 9143870 ~ 9161470 (-)

Expression


Co-expression Network