khdrbs1b (khdrbs1,LOC103045134,LOC103472039,LOC106924560,LOC106945640)


Basic Information

Item Value
gene id khdrbs1b
gene name khdrbs1,LOC103045134,LOC103472039,LOC106924560,LOC106945640
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 7744824 ~ 7756061 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942265.2
CTCAGGGCGCCTTTTCGTCGCTCGCGAGCTGTATTGTTCTTCCATTTCCGCACGCCGCGCGCCGGACCGCTGCACTTTAGccgtgctgctgctgctgctgctgctgctcagcgTCTCCCTGCAAACCGCGTCGTCGTCGTCGTTTGTTCACCTCAACCGAATCCACCCGGCtcgagaggaggaaaaaaaagtggatttGCGGTAGTTTCACCGCCGGATTTTACAGGTTTGCTCCCCGCTCGAGGTTTTATATCGCTTTGTTAACTTTATTTACGAACTCCCCAAAATGGAGAACGAGAACAAGTACCTCCCGCAGCTGCTGGCGGAAAGAGACAGCCTGGACTCGTCCTTCATACACGCCATGAAACTTTTATCTGCAGAAATCGAGAGGGTTCAGAAAGATGAGCCGGAAAAAGACAGCGAAACCTACTTGGATCTGTTCACGGCGAAGAATATCAAACTGAAGGAAAGAGTCCTCATTCCAGTCAAGCAGTACCCAAAGTTTAACTTTGTTGGGAAGATTCTTGGGCCTCAAGGGAACACCATTAAGAGACTGCAGGAGGAGACAGGTGCCAAGATCTCAGTACTGGGCAAGGGATCCATGAGAGACAAAGCAAAGGAGGAGAGCTTGAGGAAAAGTGGTGAGCCCAAATACGCCCACCTGTCCATGGAACTCCACGTGTTTATTGAAGTGTTTGCTCCAGCGCCCGAAGCGTACATGCGCATGGCCCATGCTATGGAGGAGGTTAAGAAGTTCCTCTTCCCTGACATGATGGATGAAATTTGCCAGGAGCAGTTCATGGAGATGGGATATCTGAATGGCAGCCATGAACATGGCGTCCGAGGCAGAGGAGGCCCGATGGCCAGGGGGCGTGGAGGACCCCCGCCACCAAGGGGTCGAGGCATGGCACCGATGCGTGGTGGTGTTCCGCGTGGTGGTCCAGCCAGAGGTGGAGCGGTGAGAGGAGCTCCAGCAGGGCGTGGAGGGCCACCAGCTCAGCCTGGCAGAGGCGCTGCTGCCAACAGAGCCCGGGCTCCTGCCCCTGGATCGCAGAGGATGCCTCCTCCACCGCGCCCTCCTGCCCAGGAGTCTTACGAAGACTATTCCTATGACGAAAGCTACACAGAATCGGGCTATGAATCCTACGACAACTATTACAGTCAGCCACAGGCAGAACCAGAGTATTATGACTATGGACATGGAGAGACACAGGAAGGATATGAAAATTATGCTCAAGATGACTGGAATGGAACGCAGCGTGCTTCTGCTGGTGGGAAAGCGGCTGCTCAGAGACAAACGAAGGGAGCGTACAGGGAACATCCGTATGGACGATACTGAACTCTCAACAAGCACAACGTCATCACCCATAATGTCCCATCATGACGACTGTCTCCCACGGCAGCTCGCTCTTTAAGCAACCTGACAAAAGTAATTGTCCGCCTTTCCGTTTCGCATTTCTGCTctggacatttttttaaaggaaacctGAAAAATCAGCAACTGAACGCATCGGGACTCAATCGAAAGTTCAAGACAGTTTGAGGGGGGTttaggtatttaaaaaaacagcctgttcttattttcagttttatacTCCTAATCTCTCTCTGCTTTAATCTCTGCTTTTTTGcattgttagtttttttttctttttttgtcctctCATTGCTttggtaaaatatttaattgaagAGATAAAGCCTGACTTGTTGATGAGTTGCAGATTCCCAGTAGGCTACATTTCAAAATTCTGCTCAATATTAGGAGATCAAAAAGCCATTAAACCAAATCAATTATGTAACATAATGTAAAGGAGCGTTAATTAAGGGAAGGAAAAATCTCTTTAATGACATTGACAACAAttgattatttgttttaaatagtcTTAAAAGATGTACGATTAGCTTTAGgtttcaatattttttacatgatattttaGAGTTTTGAAATATAGCCCTAATAGACACTGTTGAGATGGACTGTCCTCAAATCcttaatttgttaaaataagTTATGGCTCTTCAAAATCTGTTCTGTAAAATGATAATTGTGTTTGGATAATTGTGTTCAAAGAGATAAAATAAGTCCGATTTTCATAGATATAATACCatgttatataaaatgcatgctcaaaCTGTTTAAGAAGGATTGGGACAACAATCTCTACAAGGGTCATCTCTTTCTAATGTAAAGGGATCCTGCAGCTAAATCCGAATTTCTTGtacatactttaaaaaaaaaaaaaaaaaatcaaatacgCCCAAACTGTACTTACTGCCATCTAGTCTCTGTACGCTCTCCAGAAAATGCAGAATGCTACCTGTGTAAGCTTGCCTAAATAGGTAACTAAATCTGTCCAAAAATGTTTTGCAGCAATTGTCAATAAAGCCTAGATTGTTTTTTATGAAA

Function

symbol description
khdrbs1 Enables several functions, including protein domain specific binding activity; protein tyrosine kinase binding activity; and single-stranded RNA binding activity. Involved in T cell receptor signaling pathway; positive regulation of RNA export from nucleus; and regulation of gene expression. Located in cytoplasm; membrane; and nucleoplasm. Part of protein-containing complex.

NR:

description
KH domain-containing, RNA-binding, signal transduction-associated protein 1-like

GO: NA

KEGG:

id description
K13198 KHDRBS1; KH domain-containing, RNA-binding, signal transduction-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942265.2 True 2410 mRNA 0.45 9 7744824 7756061

Neighbor

gene id symbol gene type direction distance location
kpna6 kpna6,LOC107584279,LOC107745716,LOC107562870 coding downstream 243611 7481825 ~ 7501213 (-)
txlna txlna,LOC108433836,LOC107687085,LOC107562872,LOC107576061 coding downstream 267846 7467045 ~ 7476978 (-)
eif3i eif3i,LOC107691510,LOC107709286 coding downstream 280366 7453738 ~ 7464458 (-)
srfbp1 srfbp1 coding downstream 531529 7207545 ~ 7213295 (-)
e2f3 LOC108272398 coding downstream 539760 7198361 ~ 7205064 (-)
agr2 agr2,LOC108273355,LOC108433813,LOC107584355,LOC107745729,LOC107687097,LOC107562756 coding upstream 25854 7781915 ~ 7784061 (-)
ppp1r10 ppp1r10,LOC107709274,LOC107745712,LOC107691520 coding upstream 32848 7788909 ~ 7798665 (-)
abcf1 abcf1,LOC107745711,LOC107691519 coding upstream 48722 7804783 ~ 7819711 (-)
bag6l bag6,LOC107687076,LOC107745707 coding upstream 88402 7844463 ~ 7858199 (-)
pip4p2 tmem55a,LOC107702130 coding upstream 171384 7927445 ~ 7938210 (-)
G401813 NA non-coding downstream 3067 7739349 ~ 7741757 (-)
G401812 NA non-coding downstream 5580 7738610 ~ 7739244 (-)
G401811 NA non-coding downstream 6382 7735631 ~ 7738442 (-)
G401815 NA non-coding downstream 36633 7707862 ~ 7708191 (-)
G401758 NA non-coding downstream 177077 7567533 ~ 7567747 (-)
G401835 NA non-coding upstream 59938 7815999 ~ 7827663 (-)
G402090 NA non-coding upstream 566095 8322156 ~ 8324199 (-)
G402120 NA non-coding upstream 664326 8420387 ~ 8448303 (-)
G402122 NA non-coding upstream 677783 8433844 ~ 8436904 (-)
G402129 NA non-coding upstream 693434 8449495 ~ 8508126 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 468042 7254433 ~ 7276782 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other downstream 1370324 6371617 ~ 6374500 (-)
G401205 nelfe other downstream 1569564 6172988 ~ 6175260 (-)
G400815 NA other downstream 2155077 5587398 ~ 5589747 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 2604444 5128235 ~ 5140380 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 113342 7869403 ~ 7917693 (-)
G402673 NA other upstream 1387809 9143870 ~ 9161470 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other upstream 1471334 9227395 ~ 9284493 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other upstream 1630934 9386995 ~ 9416253 (-)
si:ch73-347e22.4 NA other upstream 4021308 11777369 ~ 11790179 (-)

Expression


Co-expression Network