abcf1 (abcf1,LOC107745711,LOC107691519)


Basic Information

Item Value
gene id abcf1
gene name abcf1,LOC107745711,LOC107691519
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 7804783 ~ 7819711 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942275.2
CTTCTGAAACTCTGTGGTGCTCTTGTGTAGTGAGTAGGGAAGTGTAGGCCGCATGTGCGCTGGTCTGGCATACAGAGAGTAATCTACGCATCAGTTTCACCACCTAATCACCTTTCATTAATTTAAAGGTCGACGAAAATGCCGAAGAAATCGAAAGAAGTGGCGGAGTGGGAGGGAGACGATGAAGCACAGACAGAAAAAGTTGtcaagaaaggaaagaaagacaagaagGGGAAGAAGAGCTTCTTCGATGAACTGGCCTCAGAAAGTAAGACCGAGAAGACTGAAGAGCCAGCAGTGAAAGAGACACAAGGAAAGCAGcctcaaaagaaaaagaaggaccGGCGGAAAGGGAAAGCCGGGGACgtggatgatgaagatgaagacgTCATGCAGCGACTCAAGAAACTGTCCGTCCAGCCCagtgatgaggaagaggaagaggTAATAGCAGCTCCTGTGAAAGGTGGAAAGAGAAACAAGGGTGGAAACATATTCGCTGCTCTGAGCCAGGGTCAGAGTGATGAAGATGACGAAGAGGACGATgcagatggtgatgatgacgatgatgatgaacCTAAAAATAAGAAGAACTCTAAGGAGGTTtccagaggaaagaaaaacGATAAGGTTAAGACAAAGAAATCTAAGGCATCTGATGATGAACCTgaggaggagctggagaaaAAGGATGAGAATGAGACGAAGGAGgtgaagaagaacaagaaaacaGGCAGCAAAGCATCTAAGGAGGAGGATgtggagaaagaggaaaaacctCAGAAGGCTGCCGGAAAGAAAGAACAGCCAAAGAAAGGCAAGCCCGCTCACCAACCTCCTagtgaggatgaggaagaggaagagaaaagcgACGACAATGACACCATGAGGAGTGCAGAGGACGCGCTTGTGGCGGAGCAGAGCAAAGAACAGGAAGACCCCTATGCCAACCTGAgtaaaaaggagaagaagaagaaaaagaagatgATGGAGTATGAGCGGCAGGTGGCTAGTGTCCGTGCTCAGAACGCCTCAGAGGGAGATTTCTCAGTCTCTCAGGCTGAGCTGTCTTCAAGGCAAGCCATGCTGGAGAACGCCTCTGATATTAAGCTGGAGAGATTCAGCATCTCGGCTCACGGGAAGGAGCTTTTTGTCAACGCTGATCTTCTGATTGTGGCTGGTCGCCGCTATGGTCTGGTCGGACCAAACGGGAAAGGAAAGACCACATTACTGAAGCACATTGCAAACAGAGCTCTCAGCATTCCTCCCAATATTGATGTGCTGCTCTGTGAACAAGAGGTGGTCGCTGATGACACGCCGGCCGTGCAGGCCGTGCTGAAGGCAGACACGCGGCGTATGAAGTtgctggaggaggagaagaggctGCAGGTTTTGCTTGAGAAGGGGGAGGACAGTGTCTCTGACAGACTAGAGAAGGTGTATGAGGAGCTGAGGGCGATCGGAGCAGAGGCAGCAGAGGCCAAGGCTCGCAGGATCCTGGCTGGTTTGGGCTTCACACCTGAAATGCAGAACAGACCCACTAAGAAGTTTTCAGGTGGCTGGAGAATGAGAGTATCACTCGCCAGAGCTCTGTTCATGGAGCCCACCCTGCTGATGCTGGATGAGCCAACGAACCACCTCGACCTCAATGCTGTCATCTGGCTCAACAActacCTGCAAAGCTGGAAGAAGACCCTTCTCATTGTGTCCCATGACCAGAGTTTCTTAGACGATGTCTGTACAGATATCATTCACTTGGACAACCAGAAACTCTATTACTACAGGGGCAACTACTTGACGTTTAAGAAGATGTATGTGCAGAAGCAAAAGGAGCTCCTGAAGCAGTatgagaaacaagagaaaaagcTGAAAGACCTGAAAGCTGGAGGCAAATCCACTAAACAagctgagaaacaaacaaaggagGCGCTGACTAGGAAACAGCAGAAAGGCAAGAAGAAGGGACAGGAAGAGGAAAGTCATGAGGCCCCAGAGCTCCTGAAAAGACCTAAAGAATACACTGTGAAGTTCACTTTTCCAAACCCACCACCTCTCTCTCCACCCATTCTTGGCCTCCACAGTGTGGACTTTGGCTATGAGGGTCAGAAGCCTCTGTTCAGAAATGTTGACTTTGGTATTGATATGGAATCTCGAAtttGTATAGTTGGACCAAATGGTGTTGGAAAGAGTACACTTCTACTTCTGCTGACAGGAAAGTTGACTCCTACCAAAGGCGAGATGAGGATGAATCACCGCTTGAAAGTGGGCTTCTTCAACCAGCAGTATGCTGATCAGCTGAACATGGAGGAGTCTCCCACAGAGTATCTGCAGAGGAATTTCAATCTGCCATACCAGGACAGCAGAAAGTGTCTCGGCCGCTTCGGTCTAGAGAGCCATGCACACACTATCCAGATTTCTAAACTCTCTGGTGGCCAGAAAGCAAGAGTAGTATTTGCTGAACTTTCTTGTCGCCAACCGGATGTCCTGATTTTGgaTGAGCCTACCAACAACCTGGACATTGAGTCAATTGATGCTTTATCAGAAGCCATCAATGAATACAAAGGAGCTGTGATCATTGTGAGCCACGATGCCCGCTTGATTACCGAGACTCAGTGCCAGCTGTGGGTGGTGGAAGACCGGTTGATAAACCAGATTGATGGAGACTTCGAAGACTACAAGAGAGAAGTGCTGGAGGCTCTCGGAGAAACTCTGGTTAACAAGCAGAAAGAGTGAAAGTGCAACAAGGGGATGTGTGATGCTTCGATTTCAGTGCCGTAATTTACTCGCAAAAACCCTGGTGCTTCAGTCTCGTAACCTACAATGAAAGTTCATCATTACCACCCCAGTGTGATGCAGTGAAACTGGtttatggacttttttttttaaccaaaccgATTTCTATGAGTGGTGTGCAGGCTGACTTGAAAACCTGGTGATTAAAATCCTGTCTTCGACTGAGTATCAGCTTTTTTGGGAAGTACAGCTTGAGCTTCACCAGCGCTTAACCTACAATTGTGTTTTTCTAAATGACCTGcagtagggctgcacaatattgaTAAAAATAGCACATTGCCATTTTGATTGCCCTGCATTAGTTTGACACATTTCACTACAATATATCAAAACCCCTCCAGAAGGTTTATCTGGAACCTTCATCAGAATGCTCCCAGTACACAGGTTAGTCTGTGGATTCTTGCAATATTAGCGCACTCAATATTGTAAAGGCcaatattgtattattaatattatatatattgtgcagcctTAATCTGCAGTATAGCCGTACTGGTCTGATTTGTATGTAGAAAACAAATTAGtgcaaaaaatgaaaaccaaCTAAATATAATGGAATATTACTTATGCATCTGAGTATTGACAtagaatacaaaaataaatgaattttgcaGTA
>XM_026942276.2
GCTTCTGAAACTCTGTGGTGCTCTTGTGTAGTGAGTAGGGAAGTGTAGGCCGCATGTGCGCTGGTCTGGCATACAGAGAGTAATCTACGCATCAGTTTCACCACCTAATCACCTTTCATTAATTTAAAGGTCGACGAAAATGCCGAAGAAATCGAAAGAAGTGGCGGAGTGGGAGGGAGACGATGAAGCACAGACAGAAAAAGTTGtcaagaaaggaaagaaagacaagaagGGGAAGAAGAGCTTCTTCGATGAACTGGCCTCAGAAAGTAAGACCGAGAAGACTGAAGAGCCAGCAGTGAAAGAGACACAAGGAAAGCAGcctcaaaagaaaaagaaggaccGGCGGAAAGGGAAAGCCGGGGACgtggatgatgaagatgaagacgTCATGCAGCGACTCAAGAAACTGTCCGTCCAGCCCagtgatgaggaagaggaagaggTAATAGCAGCTCCTGTGAAAGGTGGAAAGAGAAACAAGGGTGGAAACATATTCGCTGCTCTGAGCCAGGGTCAGAGTGATGAAGATGACGAAGAGGACGATgcagatggtgatgatgacgatgatgatgaacCTAAAAATAAGAAGAACTCTAAGGCATCTGATGATGAACCTgaggaggagctggagaaaAAGGATGAGAATGAGACGAAGGAGgtgaagaagaacaagaaaacaGGCAGCAAAGCATCTAAGGAGGAGGATgtggagaaagaggaaaaacctCAGAAGGCTGCCGGAAAGAAAGAACAGCCAAAGAAAGGCAAGCCCGCTCACCAACCTCCTagtgaggatgaggaagaggaagagaaaagcgACGACAATGACACCATGAGGAGTGCAGAGGACGCGCTTGTGGCGGAGCAGAGCAAAGAACAGGAAGACCCCTATGCCAACCTGAgtaaaaaggagaagaagaagaaaaagaagatgATGGAGTATGAGCGGCAGGTGGCTAGTGTCCGTGCTCAGAACGCCTCAGAGGGAGATTTCTCAGTCTCTCAGGCTGAGCTGTCTTCAAGGCAAGCCATGCTGGAGAACGCCTCTGATATTAAGCTGGAGAGATTCAGCATCTCGGCTCACGGGAAGGAGCTTTTTGTCAACGCTGATCTTCTGATTGTGGCTGGTCGCCGCTATGGTCTGGTCGGACCAAACGGGAAAGGAAAGACCACATTACTGAAGCACATTGCAAACAGAGCTCTCAGCATTCCTCCCAATATTGATGTGCTGCTCTGTGAACAAGAGGTGGTCGCTGATGACACGCCGGCCGTGCAGGCCGTGCTGAAGGCAGACACGCGGCGTATGAAGTtgctggaggaggagaagaggctGCAGGTTTTGCTTGAGAAGGGGGAGGACAGTGTCTCTGACAGACTAGAGAAGGTGTATGAGGAGCTGAGGGCGATCGGAGCAGAGGCAGCAGAGGCCAAGGCTCGCAGGATCCTGGCTGGTTTGGGCTTCACACCTGAAATGCAGAACAGACCCACTAAGAAGTTTTCAGGTGGCTGGAGAATGAGAGTATCACTCGCCAGAGCTCTGTTCATGGAGCCCACCCTGCTGATGCTGGATGAGCCAACGAACCACCTCGACCTCAATGCTGTCATCTGGCTCAACAActacCTGCAAAGCTGGAAGAAGACCCTTCTCATTGTGTCCCATGACCAGAGTTTCTTAGACGATGTCTGTACAGATATCATTCACTTGGACAACCAGAAACTCTATTACTACAGGGGCAACTACTTGACGTTTAAGAAGATGTATGTGCAGAAGCAAAAGGAGCTCCTGAAGCAGTatgagaaacaagagaaaaagcTGAAAGACCTGAAAGCTGGAGGCAAATCCACTAAACAagctgagaaacaaacaaaggagGCGCTGACTAGGAAACAGCAGAAAGGCAAGAAGAAGGGACAGGAAGAGGAAAGTCATGAGGCCCCAGAGCTCCTGAAAAGACCTAAAGAATACACTGTGAAGTTCACTTTTCCAAACCCACCACCTCTCTCTCCACCCATTCTTGGCCTCCACAGTGTGGACTTTGGCTATGAGGGTCAGAAGCCTCTGTTCAGAAATGTTGACTTTGGTATTGATATGGAATCTCGAAtttGTATAGTTGGACCAAATGGTGTTGGAAAGAGTACACTTCTACTTCTGCTGACAGGAAAGTTGACTCCTACCAAAGGCGAGATGAGGATGAATCACCGCTTGAAAGTGGGCTTCTTCAACCAGCAGTATGCTGATCAGCTGAACATGGAGGAGTCTCCCACAGAGTATCTGCAGAGGAATTTCAATCTGCCATACCAGGACAGCAGAAAGTGTCTCGGCCGCTTCGGTCTAGAGAGCCATGCACACACTATCCAGATTTCTAAACTCTCTGGTGGCCAGAAAGCAAGAGTAGTATTTGCTGAACTTTCTTGTCGCCAACCGGATGTCCTGATTTTGgaTGAGCCTACCAACAACCTGGACATTGAGTCAATTGATGCTTTATCAGAAGCCATCAATGAATACAAAGGAGCTGTGATCATTGTGAGCCACGATGCCCGCTTGATTACCGAGACTCAGTGCCAGCTGTGGGTGGTGGAAGACCGGTTGATAAACCAGATTGATGGAGACTTCGAAGACTACAAGAGAGAAGTGCTGGAGGCTCTCGGAGAAACTCTGGTTAACAAGCAGAAAGAGTGAAAGTGCAACAAGGGGATGTGTGATGCTTCGATTTCAGTGCCGTAATTTACTCGCAAAAACCCTGGTGCTTCAGTCTCGTAACCTACAATGAAAGTTCATCATTACCACCCCAGTGTGATGCAGTGAAACTGGtttatggacttttttttttaaccaaaccgATTTCTATGAGTGGTGTGCAGGCTGACTTGAAAACCTGGTGATTAAAATCCTGTCTTCGACTGAGTATCAGCTTTTTTGGGAAGTACAGCTTGAGCTTCACCAGCGCTTAACCTACAATTGTGTTTTTCTAAATGACCTGcagtagggctgcacaatattgaTAAAAATAGCACATTGCCATTTTGATTGCCCTGCATTAGTTTGACACATTTCACTACAATATATCAAAACCCCTCCAGAAGGTTTATCTGGAACCTTCATCAGAATGCTCCCAGTACACAGGTTAGTCTGTGGATTCTTGCAATATTAGCGCACTCAATATTGTAAAGGCcaatattgtattattaatattatatatattgtgcagcctTAATCTGCAGTATAGCCGTACTGGTCTGATTTGTATGTAGAAAACAAATTAGtgcaaaaaatgaaaaccaaCTAAATATAATGGAATATTACTTATGCATCTGAGTATTGACAtagaatacaaaaataaatgaattttgcaGTA

Function

symbol description
abcf1 Predicted to enable ATP binding activity. Orthologous to human ABCF1 (ATP binding cassette subfamily F member 1).

NR:

description
PREDICTED: ATP-binding cassette sub-family F member 1

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K06184 ABCF1; ATP-binding cassette, subfamily F, member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942275.2 True 3409 mRNA 0.46 27 7804783 7819710
XM_026942276.2 False 3359 mRNA 0.46 26 7804783 7819711

Neighbor

gene id symbol gene type direction distance location
ppp1r10 ppp1r10,LOC107709274,LOC107745712,LOC107691520 coding downstream 6118 7788909 ~ 7798665 (-)
agr2 agr2,LOC108273355,LOC108433813,LOC107584355,LOC107745729,LOC107687097,LOC107562756 coding downstream 20722 7781915 ~ 7784061 (-)
khdrbs1b khdrbs1,LOC103045134,LOC103472039,LOC106924560,LOC106945640 coding downstream 48722 7744824 ~ 7756061 (-)
kpna6 kpna6,LOC107584279,LOC107745716,LOC107562870 coding downstream 303570 7481825 ~ 7501213 (-)
txlna txlna,LOC108433836,LOC107687085,LOC107562872,LOC107576061 coding downstream 327805 7467045 ~ 7476978 (-)
bag6l bag6,LOC107687076,LOC107745707 coding upstream 24752 7844463 ~ 7858199 (-)
pip4p2 tmem55a,LOC107702130 coding upstream 107734 7927445 ~ 7938210 (-)
smap2 smap2 coding upstream 574812 8394523 ~ 8417397 (-)
col16a1 col16a1,LOC108272916 coding upstream 632375 8452086 ~ 8544860 (-)
adgrb2 adgrb2 coding upstream 795294 8615005 ~ 9005331 (-)
G401813 NA non-coding downstream 63026 7739349 ~ 7741757 (-)
G401812 NA non-coding downstream 65539 7738610 ~ 7739244 (-)
G401811 NA non-coding downstream 66341 7735631 ~ 7738442 (-)
G401815 NA non-coding downstream 96592 7707862 ~ 7708191 (-)
G401758 NA non-coding downstream 237036 7567533 ~ 7567747 (-)
G402090 NA non-coding upstream 502445 8322156 ~ 8324199 (-)
G402120 NA non-coding upstream 600676 8420387 ~ 8448303 (-)
G402122 NA non-coding upstream 614133 8433844 ~ 8436904 (-)
G402129 NA non-coding upstream 629784 8449495 ~ 8508126 (-)
G402142 NA non-coding upstream 701647 8521358 ~ 8522044 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 528001 7254433 ~ 7276782 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other downstream 1430283 6371617 ~ 6374500 (-)
G401205 nelfe other downstream 1629523 6172988 ~ 6175260 (-)
G400815 NA other downstream 2215036 5587398 ~ 5589747 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 2664403 5128235 ~ 5140380 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 49692 7869403 ~ 7917693 (-)
G402673 NA other upstream 1324159 9143870 ~ 9161470 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other upstream 1407684 9227395 ~ 9284493 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other upstream 1567284 9386995 ~ 9416253 (-)
si:ch73-347e22.4 NA other upstream 3957658 11777369 ~ 11790179 (-)

Expression


Co-expression Network