thbs3b (LOC108272910)


Basic Information

Item Value
gene id thbs3b
gene name LOC108272910
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4507481 ~ 4525407 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942284.2
tgaaaaaaattctgaaacacATCATCCAGCCCTTAACAGCACTCTACTGACTAGTGCATTTCTTAATTTCTCTGCAGAAGACTCGCAGTAAGCGGAAAGTTGGCGGTGTGTGAATCTGCCGTGTTTTTGGCCCCTATGGCCTTCCACATTGCTGTTGGGTGCAAACTGAGCTGTGCTGCTCAAACTCTCAAACCTCAGCAAGCCCTGAAGAAACGAGGATTAAAAGTGCTTCTTCACTGATTAAACACTTCTGTTCTGCAGGAGGATGGAGGGAGTGAGTTTACTTTCTAAAGTGCTGCTTTTTCTGCACGTGACTCTgttttttcctcacacacactcatctgaaATGAAAGTGATTGATGCGTTGGCGCTGAGTGGCGGAGCTCGGATGGCGGCGGCGGTGGAGGATTTGATGGGAGGTTTGGAGAAAATGCAGGAAGTGTACGTGACCTCTACTTTCCGTCTCCCTCCTAAAATGGGCGGCGTGCTGTTCGGAATCTACAGCAGAGACGACGGCAAGAAATACCTGGAGATCACCGTCATCGGCAAGATCACTAAAGTGTTAGTAAAATATTTGCGCTCTGATGGGAAGCTCCACTCAGTCAATCTGCATAACCCCGCCCTCTCTGATGGACGGAGCCAGTCACTCATTCTCAGAGTGGGCGGACTCAGAAAGCGCCACATCAGCTTTGAGCTCTACATTAACTGCCGTCTGATTGACTCCGCCCACGGGCTGCCCTCATTGGCCAAGCTGCCTTCAAAGGTGGAGTCTGTGGAGGTTCGTAGTGGAGAAAGGAACTTCGCCAGAATGCAGggttcaGTGGAGTCTCTAAAGCTGGCTCTCGGTGGTTCTCTTCCTAAAGCTGGACTCCTCACTGACTGCTCACTGCAGGGAGactcaacactacacaacacagTGGGCAGTGACGTTAACGCCATGCTGGGTGATCACACTAaggctctgattggtcagctgatTATATTTAATCAGATTATGGGCAACCTGAGAGAGGACATCAGGGAGATGACCAAGGAGATGTCTTTAATCAGGAACACCATCCTGGAGTGCCAAGTGTGTGgtttcCATGAGCCTCAGTCTGGTTGTCAGTCTAACCCGTGTTATGACGGGGTTGCGTGTGTGGATGTGTTGGAGTTTCCGGGGTATCGGTGCGGCTCGTGTCCCGCAGGCACAACAGGCAACGGCACACACTGCCAGGACATCAACGAGtgTGCAGCACAGCCGTGTTTCTCTCCTCACATGTGTGTGAACAGTGTTAAGGGGTTCCGCTGTGAGCCGTGTCCTCCGGGGTTCTCCGGGCCCGAGCTGAGCGGAGTCGGCATGGAGTTCGCCCAGAACCACAGACAGgagtgtgtggaCATAGACGAGTGTGCGGCTCAGACCGGCGCCTGCGTCCCCAACTCCATCTGCATCAACACAGCGGGTTCGTTTCAGTGCGGTCAGTGTAAAGTGGGTTTTGTGGGGAATCAGACATCAGGCTGTTTTCTCAGGAGAACGTGCGCTCTGCTCGGCTACGATCCGTGCGACGTCAATGCTCACTGTGTGATGGAGCGCAGCAGTGACTTCTCCTGTGTGTGTAACGTGGGATTTGCAGGGAACGGGAACATCTGCGGCGTCGACTCTGACCTCGATGGCTATCCAGATGAAGCACTTCCCTGCATTGATAACGATAAACACTGCAGAGTGGATAACTGTGGCTCCACGCCGAACTCTGGTCAGGAGGATACGGACGGTGATGGTGTCGGAGATCAGTGTGATGAAGACGCAGATGGAGATGGAATAAAGAACGTGGAGGATAATTGCCGTCTAGTGCCCAATAAAGACCAGCAGAACTCAGACACAGACTCATACGGCGATGCGTGTGATAACTGTCCAAACGTCCCTAATGGAGATCAGCTGGACACGGACGGTAACGGTGTGGGAGACAGCTGTGATAGCGACATCGATGGAGACGGAATCCCCAACATGCTGGATAACTGCCCGAAAATCCCCAATGCCATGCAGACAGACCGGGATGGAGACGGAGTGGGAGACGCGTGTGACAGCTGTCCTGAGGTCAACGACcccactcagTCGGATATTGATAACGACTTGGTGGGAGACGTCTGCGATACGAACCAGGACACagatggcGACGGTCTCCAGGACACGAGGGACAACTGTCCTGAAATCCCCAACAGCTCTCAGGTGGACTCAGATAACGACGGCATCGGAGATGATTGTGACGACGACGATGACAACGATGGAGTTCCAGACGCTTCTTATCCCGGTCCTGATAACTGCAGACTCATCCCAAATCCTAACCAGAAAGATTCAGATGCTGACGGAGTgggtgatgtgtgtgagagtgactTTGATAATGATAAAGTGAGTGACGAGATGGACGCCTGTCCTGAAAACGCTGACATCACCATGACGGACTTCCGAGCCTTCCAGACGGTCATCCTGGACCCGCACGGGGCTTCCCAGATCGACCCCAACTGGGTGGTGCTCAACCAGGGGATGGAGATCATACAGACCATGAACAGTGACCCTGGTTTGGCTGTGGGCTACACAGCGTTCAATGGCGTTGATTTTGAGGGCACATTCCACGTGAACACGATGTCCGATGATGACTACGTGGGCTTCATCTTCGCCTACCAGGACTCGTCCAGCTTCTACGTGGTGATGTGGAAGCAGACGGAGCAGACGTACTGGCAAAACCTGCCCTTCACAGCACTGGCTGAACCTGGTCTGCAGCTAAAGGCAGTGAAGTCTCGCACAGGTCCGGGTGAGTATCTGCGTAACGCACTGTGGCACACCGGCAGCACAAACGGAGAGGTGACGCTGCTCTGGAAGGATCCCAGGAATGTGGGATGGAAGGATAAAACGTCGTACCGCTGGAGCCTCAGCCATCGGCCGCAGGTCGGCTACATCAGagtGCGTCTGTATGAAGGCACTGCTCTGGTCGCTGACTCTGGCGTGGTGATTGACACCTTGATGAAAGGAGGACGCCTGGGTGTTTTCTGCTTCTCACAGGAGAACATTATCTGGTCTAATCTGGGCTACCGCTGTAACGATACAATCCCAGATGATTTTTACCTCCACCACAAACAGATGAACCTCAGCACGGGAGCATAGACGAGCGCCCACGTCTTTAATCACTGCATCATACAACCTGAAGTTACCACAGTCtgcagtgtgcgtgtgtgtgtgctagtgctgtgtgtgtatatgtgtgtgtgctagtgccatgtgtgtgtgtgtgtatgtgtgagtgctagtgccatgtg

Function

NR:

description
PREDICTED: thrombospondin-3b

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K04659 THBS2S; thrombospondin 2/3/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942284.2 True 3291 mRNA 0.53 23 4507481 4525407

Neighbor

gene id symbol gene type direction distance location
LOC113543882 NA coding downstream 6623 4497893 ~ 4500858 (-)
gh1 NA coding downstream 16194 4488748 ~ 4491287 (-)
zfpm2b LOC108272465 coding downstream 50881 4418578 ~ 4456600 (-)
LOC113543884 NA coding downstream 90644 4411699 ~ 4416837 (-)
myl4 myl4,LOC107694961,LOC107754315,LOC107585102,LOC107740645,LOC107662407 coding downstream 162267 4339535 ~ 4345214 (-)
mtx1b mtx1b,mtx1,LOC108272909,LOC103026555,LOC108410892 coding upstream 9589 4534996 ~ 4553366 (-)
si:dkeyp-92c9.4 NA coding upstream 142380 4667787 ~ 4691369 (-)
si:dkey-81h8.1 LOC108272626,LOC103028165,LOC107702549,LOC107672832,LOC107710627,LOC108442974 coding upstream 169059 4694466 ~ 4706433 (-)
sema4ab LOC108272624 coding upstream 184331 4709738 ~ 4747838 (-)
pex11b pex11b coding upstream 311443 4836850 ~ 4839788 (-)
G400112 LOC108272813 non-coding downstream 214324 4234403 ~ 4293157 (-)
G400133 NA non-coding downstream 223088 4284049 ~ 4284393 (-)
G400131 NA non-coding downstream 226048 4280777 ~ 4281433 (-)
G400085 NA non-coding downstream 230999 4190741 ~ 4276482 (-)
G399990 NA non-coding downstream 401154 4100097 ~ 4106327 (-)
G400428 NA non-coding upstream 8434 4533841 ~ 4534131 (-)
G400431 txnip,LOC107702541,LOC107731569,LOC108273074,LOC105012721,LOC105901470 non-coding upstream 33081 4558488 ~ 4562020 (-)
G400432 NA non-coding upstream 36804 4562211 ~ 4563364 (-)
G400477 NA non-coding upstream 254204 4779611 ~ 4785657 (-)
LOC113543895 NA non-coding upstream 287254 4812661 ~ 4817295 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 169054 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 347731 4150899 ~ 4159750 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 374559 4120397 ~ 4132922 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 1273157 3224065 ~ 3234324 (-)
LOC113525117 NA other downstream 1310918 3147299 ~ 3196563 (-)
polr3gla LOC108272317,LOC108415116 other upstream 72393 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 435695 4961102 ~ 5008464 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 602828 5128235 ~ 5140380 (-)
G400815 NA other upstream 1061991 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 1647581 6172988 ~ 6175260 (-)

Expression


Co-expression Network