ube2e1 (ube2e1,LOC108272959,LOC105903698,LOC107743927,LOC107655879,LOC107565235)


Basic Information

Item Value
gene id ube2e1
gene name ube2e1,LOC108272959,LOC105903698,LOC107743927,LOC107655879,LOC107565235
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 10096124 ~ 10113933 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942286.2
ACGTCAAAGATAAGCTGTTAACGTGCTGGAAGGTAACGTGACATAAAGGCTTATAGGCGTTTTATTCGCCTGACACGGCCTGTGAGAGGACAGTTTCCGTGCTGCCGCTGTGGGCTTGCGCCGGATCGCCACGGCACTTCCGCTCGGCGCGAGGGCGATTCCAAACACGCGCGTCCAGGCGACGGAAGAGGCTCGCGCAGACACAAAGAAAGGTCGCGAGGATGTCGGACGAGGATTCGCGTGCCGGCTCTagttcttcttcctcctcctcctcttcatcatcatcatcgtcgtcgtcgTTGTCATCGTCGTCCTCCGTCCGTCAGCAGTCGGAGAAAGACACACCTAGCAAGAAACGAGAGAGCAAAGCCAGCGTGAACAAAAACTCCAAACTTCTGTCAACCAGCGCCAAAAGgATTCAGAAAGAGCTAGCTGATATCATGTTGGATCCTCCACCAAACTGCAGCGCCGGCCCAAAAGGAGACAACATCTACGAGTGGAGGTCCACCATCCTGGGTCCTCCAGGCTCCGTGTATGAGGGAGGAGTCTTCTTCCTCGACATCGCCTTCACTCCCGACTACCCCTTCAAGCCGCCCAAGGTGACGTTTCGTACCAGAATCTACCACTGCAACATTAACAGTCAGGGAGTGATCTGCCTGGACATCCTGAAGGACAACTGGAGCCCAGCGCTAACCATCTCCAAGGTGCTGCTGTCCATCTGCTCTCTCCTCACAGACTGCAACCCTGCCGACCCTCTGGTGGGAAGCATCGCCACTCAGTACACAAACAACAGACCGGAGCACGACAGGATAGCCAAACAGTGGACCAAGCGCTACGCCACATAATCACACACCGCGAGGGAAGAGTGCTACTGATGGAGGGATGGCTCGGGGGAGAAGGATGTATAATGGAGAGGGGAGGGTGAGTGGGTGGTTTGGGGTGGGAGGGGGATGGGTTCAGCTGTAGGATAGAGTGTACAAGGAGTGTTTTATGGTGGAATTAAAGTCTTATTTCCTGATATTGTCATTTAATGTgaccctttttttccccccctttgACCCATGTAGAATTCTACTTTGGCAATAATGGATCTTAATGTGTCTtcctttattttgcttttgttttgtttccactTTTGTAAATTGATTTTAGTTAGGGCTTCAAGAGGGCCATCATTATCAATCCTGATTGCGTGTAAAAATTTGACATCTGGTACAATGTCTGACTGTACAATgtatttctctccctctgcttATTAAAGTTCCATTCGATGTACAGTC
>XM_026942287.2
CGCTCGGTTTATTCGACGTCGTttagttagtttgtttgtttgtttatttgtttgtttgttggtagAGTAAACGTAACCTCGCATGGCGGCGAAAGTTTGTTGAACTCGAGGACGGAGGAGGAAAAGTGAAgcgaattgtgtgtgtgtgtgtgcgcgtgtgtgtgtgtgtgtgtgtggcgtcgCCCAGTCGGTTATTCGGTTGCTAGCTTTAACTGGTCACTTATAGCGTTATTTTTTTTGGTGTCGAATCggttgtgttgtttgtgttgacTCATAAACACCGGCTTCCATTACAGAGCAAACTCAGGGGTCGCGAGGATGTCGGACGAGGATTCGCGTGCCGGCTCTagttcttcttcctcctcctcctcttcatcatcatcatcgtcgtcgtcgTTGTCATCGTCGTCCTCCGTCCGTCAGCAGTCGGAGAAAGACACACCTAGCAAGAAACGAGAGAGCAAAGCCAGCGTGAACAAAAACTCCAAACTTCTGTCAACCAGCGCCAAAAGgATTCAGAAAGAGCTAGCTGATATCATGTTGGATCCTCCACCAAACTGCAGCGCCGGCCCAAAAGGAGACAACATCTACGAGTGGAGGTCCACCATCCTGGGTCCTCCAGGCTCCGTGTATGAGGGAGGAGTCTTCTTCCTCGACATCGCCTTCACTCCCGACTACCCCTTCAAGCCGCCCAAGGTGACGTTTCGTACCAGAATCTACCACTGCAACATTAACAGTCAGGGAGTGATCTGCCTGGACATCCTGAAGGACAACTGGAGCCCAGCGCTAACCATCTCCAAGGTGCTGCTGTCCATCTGCTCTCTCCTCACAGACTGCAACCCTGCCGACCCTCTGGTGGGAAGCATCGCCACTCAGTACACAAACAACAGACCGGAGCACGACAGGATAGCCAAACAGTGGACCAAGCGCTACGCCACATAATCACACACCGCGAGGGAAGAGTGCTACTGATGGAGGGATGGCTCGGGGGAGAAGGATGTATAATGGAGAGGGGAGGGTGAGTGGGTGGTTTGGGGTGGGAGGGGGATGGGTTCAGCTGTAGGATAGAGTGTACAAGGAGTGTTTTATGGTGGAATTAAAGTCTTATTTCCTGATATTGTCATTTAATGTgaccctttttttccccccctttgACCCATGTAGAATTCTACTTTGGCAATAATGGATCTTAATGTGTCTtcctttattttgcttttgttttgtttccactTTTGTAAATTGATTTTAGTTAGGGCTTCAAGAGGGCCATCATTATCAATCCTGATTGCGTGTAAAAATTTGACATCTGGTACAATGTCTGACTGTACAATgtatttctctccctctgcttATTAAAGTTCCATTCGATGTACAGTC

Function

symbol description
ube2e1 Orthologous to human UBE2E1 (ubiquitin conjugating enzyme E2 E1).

NR:

description
ubiquitin-conjugating enzyme E2 E1 isoform X2

GO:

id name namespace
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K20217 UBE2E; ubiquitin-conjugating enzyme E2 E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942286.2 False 1280 mRNA 0.51 6 10096124 10113933
XM_026942287.2 True 1377 mRNA 0.49 6 10096124 10113516

Neighbor

gene id symbol gene type direction distance location
rpl15 rpl15 coding downstream 11954 10080486 ~ 10084170 (-)
nr1d2b nr1d2,nr1d2b,LOC108273061,LOC106570286 coding downstream 26498 10055018 ~ 10069626 (-)
LOC113543808 rarb,LOC107103632 coding downstream 192319 9760884 ~ 9903805 (-)
adnp2b LOC108273309 coding downstream 385017 9701804 ~ 9711107 (-)
txnl4a txnl4a,txnl4a.S,txn4a,LOC106570226,LOC106570228 coding downstream 396095 9696064 ~ 9700029 (-)
LOC113543865 LOC108272957,LOC101471788,LOC102229941,LOC105937694 coding upstream 7610 10121543 ~ 10182766 (-)
si:ch211-30b16.2 si:ch211-30b16.2,LOC108273305,LOC108441689,LOC107569868,LOC107686956,LOC107719841,LOC107708724,LOC107693995 coding upstream 89880 10203813 ~ 10214881 (-)
cited4a LOC108273161 coding upstream 298452 10412385 ~ 10415718 (-)
stmn1a stmn1,LOC108415666,LOC101477131,LOC102781761,LOC100709328 coding upstream 877779 10991712 ~ 10996996 (-)
LOC113543771 oprd1a,LOC108272459,LOC108411271,LOC105903674,LOC107689567,LOC107732912,LOC107595906,LOC107688080 coding upstream 1129572 11243505 ~ 11274312 (-)
G403316 nkiras1,LOC102786732 non-coding downstream 1494 10090569 ~ 10094630 (-)
G403262 NA non-coding downstream 143800 9934989 ~ 9952324 (-)
G403164 NA non-coding downstream 199000 9896896 ~ 9897124 (-)
G403134 NA non-coding downstream 232810 9863033 ~ 9863314 (-)
G403086 NA non-coding downstream 331220 9764674 ~ 9764904 (-)
G403323 NA non-coding upstream 68904 10182837 ~ 10183568 (-)
G403324 sf3a3 non-coding upstream 75238 10189171 ~ 10191189 (-)
LOC113543816 NA non-coding upstream 388378 10502311 ~ 10507050 (-)
LOC117596479 NA non-coding upstream 389356 10503289 ~ 10503361 (-)
LOC113543917 NA non-coding upstream 389860 10503793 ~ 10503874 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 679871 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 811631 9227395 ~ 9284493 (-)
G402673 NA other downstream 934654 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 2178431 7869403 ~ 7917693 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 2819342 7254433 ~ 7276782 (-)
si:ch73-347e22.4 NA other upstream 1663436 11777369 ~ 11790179 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 2031665 12145598 ~ 12256372 (-)
G404644 NA other upstream 2317062 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 2401383 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 2456531 12570464 ~ 12570536 (-)

Expression


Co-expression Network