pex11b (pex11b)


Basic Information

Item Value
gene id pex11b
gene name pex11b
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4836850 ~ 4839788 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942294.2
AGAGCCGTAACCCGGAAGTTAGCGTTAATGCGCAATAAAACAGTCTGTTTGCTGTCAAAATAAACGAAATATTAGCTGAATGCATAGGTGAAGTAGGATTTTAAAGGTATTGCTATCTTTAAAGGTTTATTGTTTGAATCTGAAAGTATAAAAGTAGTGCACAAAAGCGCACTGTAGCGAGTTAAGGTTAGTTGAAAGGCAGAGTTGTGTACATGGAGACGTGGGTGAGATTCAGCGCTCAGAGTCAAGCTAAAGAGCGAGTGTTCAGGGCTGCACAGTATGCCTGCACTCTGCTCGGATACACACTACAGAAAGGAGGAGCTGCAGCTCAACTGTTAACAACCATCAAGCAGCTGGAAGCTCATCTGAGTCTCAGCAGAAAACTGATGCGGTTAGGGAACTCTGCCGAGGCTCTGGAAGCAGCGAAGCGAGCTGTTCACCTCTCCGACTGCGTGCTGCGGCTCTGCATCACCGTCTCCCATTTAAACAGAGCCATGTACTTCGCCTGCGATAACCTGCTGTGGGCCGGAAAGACGGGGCTGCTGCCACGACTCGACCAGGACAAGTGGAGCCAGCGGTCATTCAGGTATTACCTGTTTGCGCTCATCTTGAACCTGACCCGTGACCTTTACGAGATCTACGGTTTGATGGAGCGTGAGCGGCGCAGCTCCTCAGCCAAAGCTCATCTCTCGGGCACCGCAGAGAACGGCGAGATCCCTTCCGTCATGTCCTCCTGCACGTCCGTCTTCACGGCCAGGCTTCAGCAGCAGCTGCGTCTGCTCACCACCGTCCTGCGCAGCAACCCTCCGCTCCTCCTGGACACGCTGAAGAACCTGTGTGACGTCTTCATCCCGCTGGATAAACTGGGCCTCTATCCTACCGGGCCGGGATTCGTGGGGGCGTGCGGTCTCACCTCGTCCGTTCTGTCCATCCTCACCGTGCTCTACCCCTGGCTCAAACTCAAACCCTAAACCACCTTTTAATGTCATGCCATGAACCAGCGCTGAGTCTGAACTGAGCTGCTGTCAGAAATTCCCAGACTGGCCAATTAAGACAGAGtgtgctgatgatgtcacaacTGTCAGAGGAGATGGAGAGCAAAAGGAGGAGGCCAcatgcgcgcgtgtgtgtgtgtgtgtgtgtttgtgtgtttgctataCTATGCattaggcatgtgctgataatcgTAGTGCATTCACGTTATACCAGAATTACAGTAATGCCAGATTACGATAACACTTATAAAAAGCGTTCACGTCTTTATACGTCATGGAATTACCATTGACAGTGTGTGAAAAACACAtgcaacccaaaaaaaaaaaccctcactgtATACGTGTATATCTGTCAAACATCCcgtattattttatataatactacaccactgttgaattctctattctgattggtcagaaggcgttgattaattttctgtaacagcagctagctctaatacattattgtttctataatagcaTACACAGGGACTGTCTGCATGAacagatttagaaaaaaaa

Function

symbol description
pex11b Predicted to be involved in peroxisome fission and regulation of peroxisome size. Predicted to be located in membrane and peroxisome. Predicted to be integral component of peroxisomal membrane. Predicted to be active in peroxisomal membrane. Human ortholog(s) of this gene implicated in peroxisomal biogenesis disorder. Orthologous to human PEX11B (peroxisomal biogenesis factor 11 beta).

NR:

description
PREDICTED: peroxisomal membrane protein 11B

GO:

id name namespace
GO:0016559 peroxisome fission biological_process
GO:0005779 integral component of peroxisomal membrane cellular_component

KEGG:

id description
K13352 PEX11B; peroxin-11B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942294.2 True 1517 mRNA 0.48 4 4836850 4839788

Neighbor

gene id symbol gene type direction distance location
sema4ab LOC108272624 coding downstream 89012 4709738 ~ 4747838 (-)
si:dkey-81h8.1 LOC108272626,LOC103028165,LOC107702549,LOC107672832,LOC107710627,LOC108442974 coding downstream 130417 4694466 ~ 4706433 (-)
si:dkeyp-92c9.4 NA coding downstream 145481 4667787 ~ 4691369 (-)
mtx1b mtx1b,mtx1,LOC108272909,LOC103026555,LOC108410892 coding downstream 283484 4534996 ~ 4553366 (-)
thbs3b LOC108272910 coding downstream 311443 4507481 ~ 4525407 (-)
rit1 rit1,LOC107563922,LOC105906336,LOC107676106 coding upstream 1115 4840903 ~ 4850568 (-)
syt11a LOC108272614 coding upstream 17432 4857220 ~ 4877644 (-)
si:dkey-222b8.1 si:dkey-222b8.1,LOC108273360,LOC108441801,LOC107672874,LOC107698642,LOC103033551,LOC107550085,LOC107748351,LOC105906332 coding upstream 44810 4884598 ~ 4905395 (-)
snapin snapin,LOC106569889 coding upstream 68738 4908526 ~ 4910977 (-)
eepd1 eepd1 coding upstream 88690 4928478 ~ 4954246 (-)
G400494 NA non-coding downstream 2867 4833754 ~ 4833983 (-)
LOC113543895 NA non-coding downstream 19555 4812661 ~ 4817295 (-)
G400477 NA non-coding downstream 51193 4779611 ~ 4785657 (-)
G400432 NA non-coding downstream 273486 4562211 ~ 4563364 (-)
G400431 txnip,LOC107702541,LOC107731569,LOC108273074,LOC105012721,LOC105901470 non-coding downstream 274830 4558488 ~ 4562020 (-)
G400503 NA non-coding upstream 41918 4881706 ~ 4884003 (-)
G400500 NA non-coding upstream 71562 4911350 ~ 4918883 (-)
G400517 LOC108273316 non-coding upstream 172399 5012187 ~ 5012795 (-)
G400501 LOC108272940 non-coding upstream 191071 5030859 ~ 5035922 (-)
LOC113543905 NA non-coding upstream 400311 5240099 ~ 5242052 (-)
polr3gla LOC108272317,LOC108415116 other downstream 201793 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 498423 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 677100 4150899 ~ 4159750 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 703928 4120397 ~ 4132922 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 1602526 3224065 ~ 3234324 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 121314 4961102 ~ 5008464 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 288447 5128235 ~ 5140380 (-)
G400815 NA other upstream 747610 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 1333200 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 1531829 6371617 ~ 6374500 (-)

Expression


Co-expression Network