Item | Value |
---|---|
gene id | agr2 |
gene name | agr2,LOC108273355,LOC108433813,LOC107584355,LOC107745729,LOC107687097,LOC107562756 |
gene type | coding |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047623.1 |
NCBI id | CM018569.1 |
chromosome length | 15305753 |
location | 7781915 ~ 7784061 (-) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
agr2 | Predicted to enable identical protein binding activity. Acts upstream of or within intestinal epithelial cell differentiation. Predicted to be located in extracellular region. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including digestive system; hatching gland; integument; olfactory system; and vestibuloauditory system. Orthologous to several human genes including AGR2 (anterior gradient 2, protein disulphide isomerase family member). |
description |
---|
anterior gradient protein 2 homolog |
id | description |
---|---|
K20356 | AGR2; anterior gradient protein 2 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_026942299.2 | True | 899 | mRNA | 0.47 | 8 | 7781915 | 7784061 |
XM_026942300.2 | False | 834 | mRNA | 0.46 | 8 | 7781915 | 7783937 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
khdrbs1b | khdrbs1,LOC103045134,LOC103472039,LOC106924560,LOC106945640 | coding | downstream | 25854 | 7744824 ~ 7756061 (-) |
kpna6 | kpna6,LOC107584279,LOC107745716,LOC107562870 | coding | downstream | 280702 | 7481825 ~ 7501213 (-) |
txlna | txlna,LOC108433836,LOC107687085,LOC107562872,LOC107576061 | coding | downstream | 304937 | 7467045 ~ 7476978 (-) |
eif3i | eif3i,LOC107691510,LOC107709286 | coding | downstream | 317457 | 7453738 ~ 7464458 (-) |
srfbp1 | srfbp1 | coding | downstream | 568620 | 7207545 ~ 7213295 (-) |
ppp1r10 | ppp1r10,LOC107709274,LOC107745712,LOC107691520 | coding | upstream | 4848 | 7788909 ~ 7798665 (-) |
abcf1 | abcf1,LOC107745711,LOC107691519 | coding | upstream | 20722 | 7804783 ~ 7819711 (-) |
bag6l | bag6,LOC107687076,LOC107745707 | coding | upstream | 60402 | 7844463 ~ 7858199 (-) |
pip4p2 | tmem55a,LOC107702130 | coding | upstream | 143384 | 7927445 ~ 7938210 (-) |
smap2 | smap2 | coding | upstream | 610462 | 8394523 ~ 8417397 (-) |
G401813 | NA | non-coding | downstream | 40158 | 7739349 ~ 7741757 (-) |
G401812 | NA | non-coding | downstream | 42671 | 7738610 ~ 7739244 (-) |
G401811 | NA | non-coding | downstream | 43473 | 7735631 ~ 7738442 (-) |
G401815 | NA | non-coding | downstream | 73724 | 7707862 ~ 7708191 (-) |
G401758 | NA | non-coding | downstream | 214168 | 7567533 ~ 7567747 (-) |
G401835 | NA | non-coding | upstream | 31938 | 7815999 ~ 7827663 (-) |
G402090 | NA | non-coding | upstream | 538095 | 8322156 ~ 8324199 (-) |
G402120 | NA | non-coding | upstream | 636326 | 8420387 ~ 8448303 (-) |
G402122 | NA | non-coding | upstream | 649783 | 8433844 ~ 8436904 (-) |
G402129 | NA | non-coding | upstream | 665434 | 8449495 ~ 8508126 (-) |
fndc5b | fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 | other | downstream | 505133 | 7254433 ~ 7276782 (-) |
polr1h | znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 | other | downstream | 1407415 | 6371617 ~ 6374500 (-) |
G401205 | nelfe | other | downstream | 1606655 | 6172988 ~ 6175260 (-) |
G400815 | NA | other | downstream | 2192168 | 5587398 ~ 5589747 (-) |
LOC113543870 | LOC108272368,LOC108261349,LOC108261350 | other | downstream | 2641535 | 5128235 ~ 5140380 (-) |
tmem64 | tmem64,LOC107696193,LOC107584320 | other | upstream | 85342 | 7869403 ~ 7917693 (-) |
G402673 | NA | other | upstream | 1359809 | 9143870 ~ 9161470 (-) |
runx1t1 | runx1t1,LOC107702085,LOC107653844 | other | upstream | 1443334 | 9227395 ~ 9284493 (-) |
triqk | triqk,LOC107710222,LOC107724370,LOC107702072 | other | upstream | 1602934 | 9386995 ~ 9416253 (-) |
si:ch73-347e22.4 | NA | other | upstream | 3993308 | 11777369 ~ 11790179 (-) |