agr2 (agr2,LOC108273355,LOC108433813,LOC107584355,LOC107745729,LOC107687097,LOC107562756)



Basic Information


Item Value
gene id agr2
gene name agr2,LOC108273355,LOC108433813,LOC107584355,LOC107745729,LOC107687097,LOC107562756
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 7781915 ~ 7784061 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026942299.2
ATCAGACATAcctgaagaggaagagagaagggGCGGGACATGCAGGTGCACAGGTGTATAAATGCAGCTCAGGTGAGAGTCAGACACCACAGCAGGACTGGGagactgaacacactcactaaagGGAAACCTGAGAACAGCCTGTGAAGATGATAAAAGGACTACTGTCAGTGCTCTTGGTCCTGGTGGTCGTGACTTCCACCATGGGGAAGCCAGAGAAAAGCCCTGACAAGACTGCGGTCAAGAAGGAGAAACGAATCCCTCAGACTCTCTCCAGAGGATGGGGTGATCAGCTGATCTGGGCTCAGACCTATGAGGAGGCACTCTTCTTGGCACGCTCACAGAACAAGCCCCTGATGGTCATCCTCCACTTGGAAGAATGCCCACACAGCCAGGctctGAAGAAGGCTTTCGCTGAGGATAAAGACATCCAGAAACTAGCCGACGAGGACTTCATCCTTCTGAACCTGGTGtatGAAACCACAGATAAGCACCTGTCTCCTGATGGGCAGTACGTTCCCAGAATCATCTTTGTTGATCCCTCAATGACTGTTCGTGCTGACATCACCGGCCGCTACTCCAACCGCATGTACGCCTATGAGCCCGCTGACATGAAACTCCTGCAGAACAACATGCTCAGAGCCAAGAAGCTCCTGAAAACAGAGTTGTAAAGTGCAACCTCATGATGTCTTCCATCCTGGAGTGGATTATCTCCCCCTTTTAGAAGTTATAGTTCTTATTCTGTTATAATGCTGTAAAAAACGCACTGGAAATCTTTGAACTCATTTTTTGGAtatattttgtttctgttaCTGTCAGCCTTACAGACCGGCTTTTCATCTAATGTACTGCATCAGGGATGCATTTGTTTtggataaataaagaaaaattatgcTAAA
>XM_026942300.2
GGAAACCTGAGAACAGaaaaaaaccagaaaagcTTTTCAGCCTTTACTAACGCCGGATTGATCTCCTTTGATCAGCCTGTGAAGATGATAAAAGGACTACTGTCAGTGCTCTTGGTCCTGGTGGTCGTGACTTCCACCATGGGGAAGCCAGAGAAAAGCCCTGACAAGACTGCGGTCAAGAAGGAGAAACGAATCCCTCAGACTCTCTCCAGAGGATGGGGTGATCAGCTGATCTGGGCTCAGACCTATGAGGAGGCACTCTTCTTGGCACGCTCACAGAACAAGCCCCTGATGGTCATCCTCCACTTGGAAGAATGCCCACACAGCCAGGctctGAAGAAGGCTTTCGCTGAGGATAAAGACATCCAGAAACTAGCCGACGAGGACTTCATCCTTCTGAACCTGGTGtatGAAACCACAGATAAGCACCTGTCTCCTGATGGGCAGTACGTTCCCAGAATCATCTTTGTTGATCCCTCAATGACTGTTCGTGCTGACATCACCGGCCGCTACTCCAACCGCATGTACGCCTATGAGCCCGCTGACATGAAACTCCTGCAGAACAACATGCTCAGAGCCAAGAAGCTCCTGAAAACAGAGTTGTAAAGTGCAACCTCATGATGTCTTCCATCCTGGAGTGGATTATCTCCCCCTTTTAGAAGTTATAGTTCTTATTCTGTTATAATGCTGTAAAAAACGCACTGGAAATCTTTGAACTCATTTTTTGGAtatattttgtttctgttaCTGTCAGCCTTACAGACCGGCTTTTCATCTAATGTACTGCATCAGGGATGCATTTGTTTtggataaataaagaaaaattatgcTAAA

Function


symbol description
agr2 Predicted to enable identical protein binding activity. Acts upstream of or within intestinal epithelial cell differentiation. Predicted to be located in extracellular region. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including digestive system; hatching gland; integument; olfactory system; and vestibuloauditory system. Orthologous to several human genes including AGR2 (anterior gradient 2, protein disulphide isomerase family member).

NR:

description
anterior gradient protein 2 homolog

GO: NA

KEGG:

id description
K20356 AGR2; anterior gradient protein 2

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026942299.2 True 899 mRNA 0.47 8 7781915 7784061
XM_026942300.2 False 834 mRNA 0.46 8 7781915 7783937
Loading

Neighbor


gene id symbol gene type direction distance location
khdrbs1b khdrbs1,LOC103045134,LOC103472039,LOC106924560,LOC106945640 coding downstream 25854 7744824 ~ 7756061 (-)
kpna6 kpna6,LOC107584279,LOC107745716,LOC107562870 coding downstream 280702 7481825 ~ 7501213 (-)
txlna txlna,LOC108433836,LOC107687085,LOC107562872,LOC107576061 coding downstream 304937 7467045 ~ 7476978 (-)
eif3i eif3i,LOC107691510,LOC107709286 coding downstream 317457 7453738 ~ 7464458 (-)
srfbp1 srfbp1 coding downstream 568620 7207545 ~ 7213295 (-)
ppp1r10 ppp1r10,LOC107709274,LOC107745712,LOC107691520 coding upstream 4848 7788909 ~ 7798665 (-)
abcf1 abcf1,LOC107745711,LOC107691519 coding upstream 20722 7804783 ~ 7819711 (-)
bag6l bag6,LOC107687076,LOC107745707 coding upstream 60402 7844463 ~ 7858199 (-)
pip4p2 tmem55a,LOC107702130 coding upstream 143384 7927445 ~ 7938210 (-)
smap2 smap2 coding upstream 610462 8394523 ~ 8417397 (-)
G401813 NA non-coding downstream 40158 7739349 ~ 7741757 (-)
G401812 NA non-coding downstream 42671 7738610 ~ 7739244 (-)
G401811 NA non-coding downstream 43473 7735631 ~ 7738442 (-)
G401815 NA non-coding downstream 73724 7707862 ~ 7708191 (-)
G401758 NA non-coding downstream 214168 7567533 ~ 7567747 (-)
G401835 NA non-coding upstream 31938 7815999 ~ 7827663 (-)
G402090 NA non-coding upstream 538095 8322156 ~ 8324199 (-)
G402120 NA non-coding upstream 636326 8420387 ~ 8448303 (-)
G402122 NA non-coding upstream 649783 8433844 ~ 8436904 (-)
G402129 NA non-coding upstream 665434 8449495 ~ 8508126 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 505133 7254433 ~ 7276782 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other downstream 1407415 6371617 ~ 6374500 (-)
G401205 nelfe other downstream 1606655 6172988 ~ 6175260 (-)
G400815 NA other downstream 2192168 5587398 ~ 5589747 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 2641535 5128235 ~ 5140380 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 85342 7869403 ~ 7917693 (-)
G402673 NA other upstream 1359809 9143870 ~ 9161470 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other upstream 1443334 9227395 ~ 9284493 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other upstream 1602934 9386995 ~ 9416253 (-)
si:ch73-347e22.4 NA other upstream 3993308 11777369 ~ 11790179 (-)

Expression


agr2(agr2,LOC108273355,LOC108433813,LOC107584355,LOC107745729,LOC107687097,LOC107562756) Expression in all Baseline Samples

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3000.
End of interactive chart.

agr2(agr2,LOC108273355,LOC108433813,LOC107584355,LOC107745729,LOC107687097,LOC107562756) Expression in each Bioproject

Bar chart with 3 bars.
agr2(agr2,LOC108273355,LOC108433813,LOC107584355,LOC107745729,LOC107687097,LOC107562756) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 5000.
End of interactive chart.

Co-expression Network