mtx1b (mtx1b,mtx1,LOC108272909,LOC103026555,LOC108410892)


Basic Information

Item Value
gene id mtx1b
gene name mtx1b,mtx1,LOC108272909,LOC103026555,LOC108410892
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4534996 ~ 4553366 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942301.2
GAGTGTTTCCGGGTGAAAGGTTGCGCGTCATTCCAAAATGGCTGCTCCCATGGAGTTGTACTGTTGGAAAGGCGACTATGGCTTACCATCGGTCGATGTGGATTGTTTAACTGTGCTGGCTTATGCCAAGTTTGCAGGTGCTCCGCTCAAAGTTCACAAGATTACCAACCCATGGAGAAGCCCAACAGGTACGCTGCCTGCATTGAAGACCAGAGAAGAGGGCAGTTTATCACAGCCGAGTAAGATCATCATCCAGCTCAGGAAGCAGAAATATAACGCTGATTACGATCTTTCGGCTAAAGAGGGCGCGGACACGCTCGCCTTCGTCTCCTTACTGGAGGAGAAGCTGCTGCCTGCTCTGATTTACACACAGTGGGTCGACGCTAAAAATTACGTAGACGTGACGCGGCGCTGGTACGCTGAACACACCCCGTTCCCACTGAACTTCCTGCTGCCCAACCGCATACACTCGAGGCAGATAGAGAGGCTGAGGCTGATCAGGGGAGACGCCATACTGGAGCCTGAGGAGCAGCTGGAGAAAGAGCTTTACCAGGATGCGCTGGAGTGCATGACTCTCCTCTCACAGAGACTCGGCTCACACAAGTTCTTCTTCGGAGACTCCCCCTCCTCACTGGATGCGTATGTGTTTGGTCACCTCGCGCCGCTGCTGAAGATTAAACTACCCAACGCAAAACTCCAGCAGCACCTGAACTCGTTAGAGAACCTGCAGCAGTTCTGCACCAACATCCTGCTGCTTTATTTTCCCTCAGACAGCCGAGAAGCTTCAAGCAGAAAATCTGCCGTTCACTCCGACGGCAGTGACTTTGATAACGAGCCGCACAAACGGCGTAACCAGATCCTGTCCGTGCTGTTCGCCGTGGCGGCCATGTTGGGTTACGCCTTCCTCAGCGGCATCGTCACCATCCAAAGCTCACGATCGCAGCTCGACGAGCGTCGCCATGACGACGAAGACGAGGttgaagaagcagaagaagagtgatctaaaaaaaaaaaaaacactaaatgaaAACTGTAGATTGTAAATTAACCTCCCCGAGTTCCactattaaagtatttatgaGCTTGTTTATTAAGCAAGCCACACGCTGGTGCTCatattggtgttttttttttcttgttttgtaaagttaatcataaatcttttaagaataaaaaaatattagaattattatttacaggatTGCGTTGTCCCTGTAGTCATGGCATCATCGCAGCAGAGCTTTAGGTCTGATATCTAATTGcaaatgcttctttttttggagtgaataatattaatattattatatatttttcaggtCTCATTAAAgctgatggattttttttgaaCTGatgaacaaatttttaaaaaattggtaTGTTATGTCTGATTAAATGTTCTAACTTATCTAAAAAGCTGTGAAAATGTAGAAGAACATAAACAACATGCATTAGCAGTGAA

Function

symbol description
mtx1b Predicted to be involved in mitochondrion organization. Predicted to act upstream of or within protein transport. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be part of SAM complex. Predicted to be active in cytoplasm. Is expressed in alar plate midbrain region; immature eye; myotome; and optic tectum. Orthologous to human MTX1 (metaxin 1).
mtx1 Predicted to be involved in mitochondrion organization. Part of MIB complex and SAM complex.

NR:

description
PREDICTED: metaxin-1

GO:

id name namespace
GO:0006626 protein targeting to mitochondrion biological_process
GO:0005741 mitochondrial outer membrane cellular_component

KEGG:

id description
K17776 MTX; metaxin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942301.2 True 1459 mRNA 0.46 8 4534996 4553366

Neighbor

gene id symbol gene type direction distance location
thbs3b LOC108272910 coding downstream 9589 4507481 ~ 4525407 (-)
LOC113543882 NA coding downstream 34138 4497893 ~ 4500858 (-)
gh1 NA coding downstream 43709 4488748 ~ 4491287 (-)
zfpm2b LOC108272465 coding downstream 78396 4418578 ~ 4456600 (-)
LOC113543884 NA coding downstream 118159 4411699 ~ 4416837 (-)
si:dkeyp-92c9.4 NA coding upstream 114421 4667787 ~ 4691369 (-)
si:dkey-81h8.1 LOC108272626,LOC103028165,LOC107702549,LOC107672832,LOC107710627,LOC108442974 coding upstream 141100 4694466 ~ 4706433 (-)
sema4ab LOC108272624 coding upstream 156372 4709738 ~ 4747838 (-)
pex11b pex11b coding upstream 283484 4836850 ~ 4839788 (-)
rit1 rit1,LOC107563922,LOC105906336,LOC107676106 coding upstream 287537 4840903 ~ 4850568 (-)
G400428 NA non-coding downstream 865 4533841 ~ 4534131 (-)
G400112 LOC108272813 non-coding downstream 241839 4234403 ~ 4293157 (-)
G400133 NA non-coding downstream 250603 4284049 ~ 4284393 (-)
G400131 NA non-coding downstream 253563 4280777 ~ 4281433 (-)
G400085 NA non-coding downstream 258514 4190741 ~ 4276482 (-)
G400431 txnip,LOC107702541,LOC107731569,LOC108273074,LOC105012721,LOC105901470 non-coding upstream 5122 4558488 ~ 4562020 (-)
G400432 NA non-coding upstream 8845 4562211 ~ 4563364 (-)
G400477 NA non-coding upstream 226245 4779611 ~ 4785657 (-)
LOC113543895 NA non-coding upstream 259295 4812661 ~ 4817295 (-)
G400494 NA non-coding upstream 280388 4833754 ~ 4833983 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 196569 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 375246 4150899 ~ 4159750 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 402074 4120397 ~ 4132922 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 1300672 3224065 ~ 3234324 (-)
LOC113525117 NA other downstream 1338433 3147299 ~ 3196563 (-)
polr3gla LOC108272317,LOC108415116 other upstream 44434 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 407736 4961102 ~ 5008464 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 574869 5128235 ~ 5140380 (-)
G400815 NA other upstream 1034032 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 1619622 6172988 ~ 6175260 (-)

Expression


Co-expression Network