umad1 (umad1)


Basic Information

Item Value
gene id umad1
gene name umad1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5428961 ~ 5442861 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942328.2
ACACCCGATTAActttgcgcatgcgcagtgtcATTCAGagtgacatttgtaaacaaaaacTTGAGCTATCAAAGTGACAACTTCGTTCACGCGCTGTTTATATTgacaaaacatgaacatgacGAGTTAATTAAGTTAACTTGATACAACACGTAATTTCTGTTGCTGAGTTTTTTGGAGTTTGGTATAAATAGTAAAAAGTCACGCAAGATGTTCGGTTTCTTCGGACTTCGGAAGGACTCTAAAAAGTCTCCAACATCCGAGAGAGAGACTGACGGATTTGTCGTTATTGGAGAGACAGCAGAAGAACAGGGAGCAAAACAGCAATCCAGAAGCACATCACAATTAGCCACCAATGTCATTGTACAACCTTCAAAGTCGAACAATCCAGCGCCAACCAAAACCCCAGAAGCCGTCCAGTCCACTCCTACGCCCCCTACCTCAAAACCCTCCACAGAACCGGAGAACACGGACACCGTCCCAGGTCACGCGGAGCTTCTCGGAGACATCCCCTTCACCCTAGCGCCTCACATCCTCGCCATGCAGGCCGGCCTGCCTCAGCTTCCCGACTTCACCCTGCCCCGAGACATCAACGAGAACCTGGCCAACTTCTGCTACGACTTCACGCTGGAGAACTCGGTGCTGTGCGAGCTGTGACCGCCGACCCCTGACCCTGCTCATCCCCTAAAACCTCAGACTGTTCAGAGTTTACACGGCAGGAATACAAGATCACCAAGTGGTAACTAATATCGCAGAGATGCTGATGGATTTCTCAGGATGTTATGTAGCATGAGGTCTGGAGTGAAACAGTTCtttaaagaattaaatgaaatgatatcAGAATCAATATTAGTTTGCATTGCTGTTGTTTGAAGCAACACCGTAGTATTTTTAACCttacatttttcacacacatcatactGTAACATGTGTTTGTTCTGCTTTCTACAAATTGTTTTCTATGCCttcgctttttttttcttttcagctcacagacttttgcacaacttgacttttttttaatgttcttgtTAACAGATATCCAGTAAAAAATTCTTAAACCTGTTAAATGAATTTGAATGGTTGAAGATGTCTATGGAAAATCCATATTAGGCCATAACAACATATGTAATGtccagtttttaatttaaaacatcttatatttcttttctttatatatatgtatgtttttggaTTTGGCTAGATTGTTAGAGTGTCATTTCATCGTTTGCTGTGAAACTGTAGCAGGTTTTGTTaaggttaggtttttttttttttttttttttgccttattgaGTGCTTTCAATTTCcgtagcgtttttttttttttttttggtatacaTTTAACAATAGCATTTCAGTGAAAGGCCTGCTGCTATTTACACACTGCACTTCTAGAAACGTCTAGAacaggggtgtccagtcttcTCCCCAAAGGACCAGTGTGGGTGctggttttcattccaatcaggcagtttgtttaatcagttggtCTTGGCTTTCattagactcaggtgtggcttctgcttagTTGGAATGAAATcctgcacccacaccagcctgttccggataagattggacCCCCCTGCTCTAAAACATTACATAGGTAACTATGTAATAAGTTACTGGTTTTGGTTTGTggtgtttatttcttatttatcaTCCTGTCTGTGCCTTTTACTATGTGGTTAGAAAGAAACTTGATTAGAAATCCCTGACTAGaaatttttcatattcatcttccaaaacattttctctttgttgatgcagtttgcacaatgctaacTTGGTAGCTAGGCTTCCACTACTTGTTAGCCATATTAGCCTCCGGagaactaaagaagcaaatgtcaGACGCCAAATATGTCTTTGCTCATCGACTGTATTTTGGTTTATTCAAAAATTGTGCGAGTCCCGTTTTTTGAGTGTACTAttccattaaaacattaaacttgAAAACCcactttttcattaaagaaatCATGGTTGCATGTTGAAATTGTATCGTGTGCACAAATCTGTCTGATATTTAAGCTTCTTTCTTTTGGGATTATcagagggtgccaataattctgtatttaattGAACATTATTTGATTAAAGatgttttgatatttga

Function

symbol description
umad1 Orthologous to human UMAD1 (UBAP1-MVB12-associated (UMA) domain containing 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942328.2 True 2119 mRNA 0.39 4 5428961 5442861

Neighbor

gene id symbol gene type direction distance location
glcci1a glcci1,LOC108414387,LOC107672859 coding downstream 1358 5391522 ~ 5427603 (-)
rims3 rims3,LOC107672861,LOC107702460,LOC107598211,LOC107731575,LOC107571463 coding downstream 47535 5319003 ~ 5381426 (-)
ptp4a3a ptp4a3,LOC108272580,LOC107702466,LOC107571462,LOC107738588,LOC107598212,LOC105902033,LOC107731571,LOC103031245 coding downstream 111117 5289830 ~ 5317844 (-)
LOC113543899 NA coding downstream 143353 5281297 ~ 5285608 (-)
LOC113543852 LOC108262220 coding downstream 152643 5268318 ~ 5276318 (-)
asns asns,LOC107754811,LOC107731557,LOC107702657,LOC107672863,LOC108410560 coding upstream 97515 5540376 ~ 5549658 (-)
bloc1s4 LOC108272578 coding upstream 107517 5550378 ~ 5559011 (-)
pard6gb LOC108272576 coding upstream 117119 5559980 ~ 5598363 (-)
dtnbp1b dtnbp1b,LOC108272579,LOC107754801,LOC107731565,LOC108435503,LOC107568291 coding upstream 371043 5813904 ~ 5846278 (-)
csnk2b csnk2b,LOC102207154,LOC100710962,LOC101175345,LOC102778826,LOC106573472 coding upstream 632715 6075576 ~ 6082184 (-)
G400676 NA non-coding downstream 48024 5371072 ~ 5380937 (-)
G400622 NA non-coding downstream 149647 5278903 ~ 5279314 (-)
LOC113543905 NA non-coding downstream 186909 5240099 ~ 5242052 (-)
G400501 LOC108272940 non-coding downstream 393039 5030859 ~ 5035922 (-)
G400517 LOC108273316 non-coding downstream 416166 5012187 ~ 5012795 (-)
G400826 NA non-coding upstream 140694 5583555 ~ 5587381 (-)
G400913 NA non-coding upstream 368483 5811344 ~ 5812012 (-)
G401106 NA non-coding upstream 464286 5907147 ~ 5971174 (-)
G401196 NA non-coding upstream 578693 6021554 ~ 6021765 (-)
G401230 NA non-coding upstream 654118 6096979 ~ 6187263 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 288581 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 420497 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 793904 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 1090534 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 1269211 4150899 ~ 4159750 (-)
G400815 NA other upstream 144537 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 730127 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 928756 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 1811572 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 2426542 7869403 ~ 7917693 (-)

Expression


Co-expression Network