dtnbp1b (dtnbp1b,LOC108272579,LOC107754801,LOC107731565,LOC108435503,LOC107568291)


Basic Information

Item Value
gene id dtnbp1b
gene name dtnbp1b,LOC108272579,LOC107754801,LOC107731565,LOC108435503,LOC107568291
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5813904 ~ 5846278 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942331.2
TGATGTGCAAGTCTTCCTTTTTTTACATTCTGTCTCATTACTTAGTGTAGACTGTGTTTGCAACAGCTTTTGCTTTAAATGGCTGTTACAAAGGACTGTAATTAACAACATGTTTAAAATAGAATGTGGACTACAAACTTAAACTCAGACAGTTGTGTGGGATTTGCACGGAGGGTGGATTTTGCCAAAAACAAAGCGGAGCTGGACTCGGAGCATGCTCAGAAGGTCCCAGAGGCAGAGTCAGGACAGCAGCAGGTGAAGTTGAAAGACAGGCAGAAGTTCTTCGAGGAGGCATTTCAGCAGGACATGGAGCATTACCTGTCCACCAGCTACCTGCAGATTGCCGAGAGGAGAGAGCCAATAGGAAGCATGTCTTCCATGGAGGTGAATGTGGACATGCTCGAACAGATGGACCTGATGGACATGTCTGACCACGAGGCCCTGGACGTCTTCCTCACCTCGGGAGCAGAGGACAACAGCGTGGCTTCCCCTATGctggAACCGGATGTGGAGTCATTCGGAGCTGAGATCACACTGCAGGTCCCGACGCAGGCCGAGCTGAGGCACAAGCTCGCCTCACTTTCTTCCACCTGCACTGACTCGGCCAGCCAGGACACCCAGGAAGAGGAGGGCGATGATGAAGATGATAGGGGTGGAGCCAGGGATGAGAGGGAGAAGATTCATGCTGACGTACACGCAGGACAAGATCAGTCCTCCAAGAACTGTGTAAATCGTGACTCATCCACATAAATGAATGAGTACGGTTTTTAAAACTGTGCGCTCCACCCTCGGTGTGTGTGAAAGTATAAAGTGTTGTGTGTAACCGGTATTTTATGATCTCATGAGGTTTTGTACAGAAATCCCCCGGTACGTGCCATGCAGCATTTATCTGATCCTCTTATTATAATATCTCCCACTCCAGCTGATGAGTCCACCTGCTCGGTTTATATAAAGCTACCATCACCTGCGC
>XM_026942332.2
TGATGTGCAAGTCTTCCTTTTTTTACATTCTGTCTCATTACTTAGTGTAGACTGTGTTTGCAACAGCTTTTGCTTTAAATGGCTGTTACAAAGGACTGTAATTAACAACATGTTTAAAATAGAATGTGGACTACAAACTTAAACTCAGACAGTTGTGTGGGATTTGCACGGAGGGTGGATTTTGCCAAAAACAAAGCGGAGCTGGACTCGGAGCATGCTCAGAAGGTCCCAGAGGCAGAGTCAGGACAGCAGCAGGTGAAGTTGAAAGACAGGCAGAAGTTCTTCGAGGAGGCATTTCAGCAGGACATGGAGCATTACCTGTCCACCAGCTACCTGCAGATTGCCGAGAGGAGAGGAAGCATGTCTTCCATGGAGGTGAATGTGGACATGCTCGAACAGATGGACCTGATGGACATGTCTGACCACGAGGCCCTGGACGTCTTCCTCACCTCGGGAGCAGAGGACAACAGCGTGGCTTCCCCTATGctggAACCGGATGTGGAGTCATTCGGAGCTGAGATCACACTGCAGGTCCCGACGCAGGCCGAGCTGAGGCACAAGCTCGCCTCACTTTCTTCCACCTGCACTGACTCGGCCAGCCAGGACACCCAGGAAGAGGAGGGCGATGATGAAGATGATAGGGGTGGAGCCAGGGATGAGAGGGAGAAGATTCATGCTGACGTACACGCAGGACAAGATCAGTCCTCCAAGAACTGTGTAAATCGTGACTCATCCACATAAATGAATGAGTACGGTTTTTAAAACTGTGCGCTCCACCCTCGGTGTGTGTGAAAGTATAAAGTGTTGTGTGTAACCGGTATTTTATGATCTCATGAGGTTTTGTACAGAAATCCCCCGGTACGTGCCATGCAGCATTTATCTGATCCTCTTATTATAATATCTCCCACTCCAGCTGATGAGTCCACCTGCTCGGTTTATATAAAGCTACCATCACCTGCGC
>XM_026942333.2
CACTCTTAGGTTTGCCTCCCAGTCAATCAGACAGCCTGagcactccacacacacactcagacacgcTGTCTCTGACAGCACCTCACGCTGCAGCATCGCTTCCTGACGGAAGGCGTGTGTGTAGCGGTCACCGAGGGTGTGTGTCAGGATGAGCGGCAGCAGAGTCGTGCTGTGAGTGGATTCCCTGCACATCCCATCACTGAGAGCTCGGCGTGCTTCATCTTCCAGCCGCATGTCTTCTCCACGATCCAGCAGCAGCAAGAGGAATTCCTCGGAGCTGGACTCGGAGCATGCTCAGAAGGTCCCAGAGGCAGAGTCAGGACAGCAGCAGGTGAAGTTGAAAGACAGGCAGAAGTTCTTCGAGGAGGCATTTCAGCAGGACATGGAGCATTACCTGTCCACCAGCTACCTGCAGATTGCCGAGAGGAGAGAGCCAATAGGAAGCATGTCTTCCATGGAGGTGAATGTGGACATGCTCGAACAGATGGACCTGATGGACATGTCTGACCACGAGGCCCTGGACGTCTTCCTCACCTCGGGAGCAGAGGACAACAGCGTGGCTTCCCCTATGctggAACCGGATGTGGAGTCATTCGGAGCTGAGATCACACTGCAGGTCCCGACGCAGGCCGAGCTGAGGCACAAGCTCGCCTCACTTTCTTCCACCTGCACTGACTCGGCCAGCCAGGACACCCAGGAAGAGGAGGGCGATGATGAAGATGATAGGGGTGGAGCCAGGGATGAGAGGGAGAAGATTCATGCTGACGTACACGCAGGACAAGATCAGTCCTCCAAGAACTGTGTAAATCGTGACTCATCCACATAAATGAATGAGTACGGTTTTTAAAACTGTGCGCTCCACCCTCGGTGTGTGTGAAAGTATAAAGTGTTGTGTGTAACCGGTATTTTATGATCTCATGAGGTTTTGTACAGAAATCCCCCGGTACGTGCCATGCAGCATTTATCTGATCCTCTTATTATAATATCTCCCACTCCAGCTGATGAGTCCACCTGCTCGGTTTATATAAAGCTACCATCACCTGCGC
>XM_026942335.2
ACCACAACATTCTGAGAGACAAGAGGTCTTCTACTACAGCAGAACACATCACAACCTTGCAGCTGGCAGAGCAGCACACACaggccagacacacacacacacactcgataGTCTGGATtctcccaaaaacacaccacagacaTTGTAACGTGCTGATTCACACTGCATTACTACACCAGGATGCATTTAGACACAGATTCAGCGGAGCTGGACTCGGAGCATGCTCAGAAGGTCCCAGAGGCAGAGTCAGGACAGCAGCAGGTGAAGTTGAAAGACAGGCAGAAGTTCTTCGAGGAGGCATTTCAGCAGGACATGGAGCATTACCTGTCCACCAGCTACCTGCAGATTGCCGAGAGGAGAGAGCCAATAGGAAGCATGTCTTCCATGGAGGTGAATGTGGACATGCTCGAACAGATGGACCTGATGGACATGTCTGACCACGAGGCCCTGGACGTCTTCCTCACCTCGGGAGCAGAGGACAACAGCGTGGCTTCCCCTATGctggAACCGGATGTGGAGTCATTCGGAGCTGAGATCACACTGCAGGTCCCGACGCAGGCCGAGCTGAGGCACAAGCTCGCCTCACTTTCTTCCACCTGCACTGACTCGGCCAGCCAGGACACCCAGGAAGAGGAGGGCGATGATGAAGATGATAGGGGTGGAGCCAGGGATGAGAGGGAGAAGATTCATGCTGACGTACACGCAGGACAAGATCAGTCCTCCAAGAACTGTGTAAATCGTGACTCATCCACATAAATGAATGAGTACGGTTTTTAAAACTGTGCGCTCCACCCTCGGTGTGTGTGAAAGTATAAAGTGTTGTGTGTAACCGGTATTTTATGATCTCATGAGGTTTTGTACAGAAATCCCCCGGTACGTGCCATGCAGCATTTATCTGATCCTCTTATTATAATATCTCCCACTCCAGCTGATGAGTCCACCTGCTCGGTTTATATAAAGCTACCATCACCTGCGC

Function

symbol description
dtnbp1b Predicted to be involved in several processes, including anterograde synaptic vesicle transport; platelet dense granule organization; and regulation of synaptic vesicle exocytosis. Predicted to be located in cytoplasm. Predicted to be part of BLOC-1 complex. Predicted to be active in neuron projection; plasma membrane; and synaptic vesicle membrane. Human ortholog(s) of this gene implicated in Hermansky-Pudlak syndrome 7 and schizophrenia. Orthologous to human DTNBP1 (dystrobrevin binding protein 1).

NR:

description
PREDICTED: dysbindin isoform X4

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942331.2 False 970 mRNA 0.49 4 5813904 5835037
XM_026942332.2 False 961 mRNA 0.49 4 5813904 5835037
XM_026942333.2 True 1046 mRNA 0.54 4 5813904 5846278
XM_026942335.2 False 976 mRNA 0.51 4 5813904 5822845

Neighbor

gene id symbol gene type direction distance location
pard6gb LOC108272576 coding downstream 215541 5559980 ~ 5598363 (-)
bloc1s4 LOC108272578 coding downstream 254893 5550378 ~ 5559011 (-)
asns asns,LOC107754811,LOC107731557,LOC107702657,LOC107672863,LOC108410560 coding downstream 264246 5540376 ~ 5549658 (-)
umad1 umad1 coding downstream 371043 5428961 ~ 5442861 (-)
glcci1a glcci1,LOC108414387,LOC107672859 coding downstream 386301 5391522 ~ 5427603 (-)
csnk2b csnk2b,LOC102207154,LOC100710962,LOC101175345,LOC102778826,LOC106573472 coding upstream 229298 6075576 ~ 6082184 (-)
prrc2a prrc2a,LOC103472915,LOC104953786 coding upstream 238631 6084909 ~ 6105333 (-)
neu1 LOC108272741,LOC103030882,LOC108411940,LOC108411932 coding upstream 262995 6109273 ~ 6114435 (-)
LOC113543800 LOC108272740,LOC108411932 coding upstream 271813 6118091 ~ 6124793 (-)
prrt1 prrt1,LOC108272790,LOC107694357,LOC107584308,LOC107595589,LOC107677474 coding upstream 292255 6138533 ~ 6149189 (-)
G400913 NA non-coding downstream 1892 5811344 ~ 5812012 (-)
G400826 NA non-coding downstream 226523 5583555 ~ 5587381 (-)
G400676 NA non-coding downstream 432967 5371072 ~ 5380937 (-)
G400622 NA non-coding downstream 534590 5278903 ~ 5279314 (-)
LOC113543905 NA non-coding downstream 571852 5240099 ~ 5242052 (-)
G401106 NA non-coding upstream 60869 5907147 ~ 5971174 (-)
G401196 NA non-coding upstream 175276 6021554 ~ 6021765 (-)
G401230 NA non-coding upstream 250701 6096979 ~ 6187263 (-)
G401243 NA non-coding upstream 341695 6187973 ~ 6188409 (-)
G401259 NA non-coding upstream 401178 6247456 ~ 6250036 (-)
G400815 NA other downstream 224157 5587398 ~ 5589747 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 673524 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 805440 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 1178847 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 1475477 4295216 ~ 4338427 (-)
G401205 nelfe other upstream 326710 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 525339 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 1408155 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 2023125 7869403 ~ 7917693 (-)
G402673 NA other upstream 3297592 9143870 ~ 9161470 (-)

Expression


Co-expression Network