ptp4a3a (ptp4a3,LOC108272580,LOC107702466,LOC107571462,LOC107738588,LOC107598212,LOC105902033,LOC107731571,LOC103031245)


Basic Information

Item Value
gene id ptp4a3a
gene name ptp4a3,LOC108272580,LOC107702466,LOC107571462,LOC107738588,LOC107598212,LOC105902033,LOC107731571,LOC103031245
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5289830 ~ 5317844 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942339.2
GAGACAACCAGAAGGGTCGTGAGTAAAATGAACGTGTGAGTTGTCTCACATGGACGCAGAGAGCTTTCAGCTCGCGAGCTGCACAAAACGACGGAATAACGTGTGCTGGAGAACACCTCCGGaAGCTCGAGTTCCCATGGTGCTATGCTTTGATGCTGTTCTTGCAGAGGCCTGGCTCTTACTGCTGCACTCAGCATCAGCACATTTGACACGTTGAACGATGCTCTGTGCTGAACCTGATGACTTTCACTGATCTTTAAACGCTCCAACTTTTAAACTCCATACACACCTATTAGCCGATGGGGTGATTTTACCCTCCTGGCAAAAAGAAAGCCATCATAAAGGCTTTGTTGTAGAAAAGAATTGGTTCCCAGGTGAACTGATCGAGTcgtgttttattattagtgaaaatataaaaaatacatattgaaATACAGACAAAGACGGAAGCTGGACGGTCCAAATACTCCCTCAGCTGTTGTCTAAAGTTCGGCCTGAAGACGAAGCAGCATGGCGCGGATGAACAGACCGGCTCCGGTGGAGGTGTGCTACAAGAACATGAGATTTCTCATCACGCACAATCCCACCAACTCCACCCTCAGCAGCTTTAAAGAGGACCTGAAGAAGTATGGTGCTACTACagtggtgcgtgtgtgtgaggtgacCTACGACAAAACGCCCCTGGAGAAGGACGGCATCACCGTGGtgGACTGGCCGTTTGATGATGGAGCTCCTCCTCCCTCCAAGGTGGTGGAGGACTGGCTGAGCCTCCTGCGGAGGCGCTTCATGGAGGAACCAGGCTGCTGCGTGGCTGTGCACTGTGTCGCAGGCCTCGGCAGGGCTCCGGTGCTGGTGGCTTTGGCTCTCATTGAGTGTGGGATGAAGTACGAAGATGCGATCCAGTTCATCAGACAGAAGCGGCGTGGCGCGATAAACAGCAAACAGCTGACCTATCTGGAGAAGTACAGGCCCAAACAGAGACTGCGCTACAAACACCCGCACATCTTCAAGAGCAAGTGCTGCATCATGTGACCTGAACGCTGCACCTGACCCGAACCAAGCCGAACCGAACTTCTCAGACCGGGGTGCTCTTCGCTGAACTGCTGCTTAAGCAGAGCCCCGTTTGGTCTGAATGAATCCCTGTTGGTGCCTAAACCTCATCGCTCTCACCACGGAGTGAACACTGCCACGCCTCtcagagaggtcaaaggtcaccacAGGGTCTGTAAGGTGCACCAAAGAAGGTGACCTTTGACTGATTGACCAGCTGATATGGAGCCAAGGGGAATCATGGGAAACTTTTTGCCTGCTCACCTTTCTTTATCTGTGAAGTCTCAggtggtttcatttttcagccaTATCTGCTCAAGTCGTCTCAGATACTGCCGCTTACTCTTTAATTTCCCTGTGATGCGTAGGCATTTCGCGAGTAAGCTCAGCGTAGACATGGACTGAGAGGATTTATAGTAGGGCTCCTCTGAGTTACCGAAACTTCTTTGGCCAAAATCTTTGCAGCTTCTTCGAGAAAGATGTCGGCATGAGGAATAAATGAAGGCTTTTTGAACTCTGCATTAGAGTTGTGTGtaagactttttatttttattccacttctgccattattataattataattattattattattattgttttctacacgtccatgatattttctaatgaacttagaTAGATCTATTTCCCCcacagaaaaataaaccaaatgaaTGTAGTAAACATGTTGCGCACCACCACGCAAGCAGTCTGCTGAGTCCGGTGTGCGTCTGTGGTAATGAACATGAAGGACGGACTTGCGTCCTTGGGAAGTACGTTCTTGGCAAGTAACCTTGCAAAAATGATGTCACAAGGACACGAGAACAGAGAATGCACTTACGCGTGTTTGAGATTCGCTGTGCACTTGGTACTGCGCAAAAACGTTCGTCACTTATTTACAATCAGTTTAATCATCTGTATTGTACAAAAGCGTTTTGGTTTCCCTGGAAaacttttatataaatgtaagatTCCAAGGTGCAGTTTAAACTGTAAGTTTTAACTGACTGTTTAAGAATGTTGTAAAAgataatggttaaaaaaaaaaaaacattcacagttAACCAATGCCAAATTAGTGCTAGCTAAGTTAACAAATGTGGCTAGTACATCTAACGAAACGGACTTTTTCATATTATGCATTGTTTGTACCAAATGAGCAGATTTGACAGCTGTGTTATTAATTTCTCAGCCCTGTACCGTACGTCAAATTATGATTCATGTGAATCATTTAATGAAAAGAATGAAGCAGtattgcacaagcaagagtgcttTTATACTGAATATGTGATTCAGCTGCAGGTAtatcacaggtaatcacagccgtgccgcACACttgcgagtgtgatattgcttttatacaacagttctgttaataagaaattaatactGAGTAATCACGTTAGTGGACCAGagctaactgttgtataagaCAATTAAAAACTTACGAGTGCTCCACCATAGCGATGATGCCACAGTGAATCATGGGACTTTCCATTCGTTCTCATTGGCAAATCACCAATCAATGCCTCCTCAGTTTTTGGGGAGGTTCAAGAAAACTTccctttttttattgttctttggTACTTGTGTTCTTGATTACTGGAATGTAACTTGGGTGTTAAAAGATGACCTCAGCCATGGACACAGAAAAGAACACATATTGAGAAACACCCATGGCCTGGCTTTGTTGTTTGAGTTTCTTATCTGACCGCCAGTTCCTGCGACATTTTTGTTGGGATCCCAATCCCCATGCACACCTCTACtctgcatcacacactgtttatatcaTGTGTATTCTCCTTTAAGCGCAGAGCTTAATCCTTTCAGATGTCactttaatgtgtttcattGTAAAACTGAAAAGATCTTAAAAagttctgattttttaaaacctcaGGTCCTCACACGGCCTAAACAAGAGCTCATGAACTGCTTTAAGACGTCTCTCTCTGCTTTTGAACACATACCTCCTGCTGTACAGAGATGcttatgataataataaaggcTGATTATGAATCA
>XM_026942341.2
TAGAATAATATGTTGTGGATGTTCTGATCATCTGTGAGTGTTTGTGAGAGAAAGGCACCTGTTCCACTGACATCCTGTGTTGCACTTCACAGCTGAGCGATcttgcagtgaaaaaaaaaaacaacaacaacaaaaaacagcaagtCAAAACATCTAATCAGTCTCAGCTGGTCTCAGTCTCGTGCTGCGTCGTGTCCAAAGGCGTCACTCAGGaAGCTCGAGTTCCCATGGTGCTATGCTTTGATGCTGTTCTTGCAGAGGCCTGGCTCTTACTGCTGCACTCAGCATCAGCACATTTGACACGTTGAACGATGCTCTGTGCTGAACCTGATGACTTTCACTGATCTTTAAACGCTCCAACTTTTAAACTCCATACACACCTATTAGCCGATGGGGTGATTTTACCCTCCTGGCAAAAAGAAAGCCATCATAAAGGCTTTGTTGTAGAAAAGAATTGGTTCCCAGGTGAACTGATCGAGTcgtgttttattattagtgaaaatataaaaaatacatattgaaATACAGACAAAGACGGAAGCTGGACGGTCCAAATACTCCCTCAGCTGTTGTCTAAAGTTCGGCCTGAAGACGAAGCAGCATGGCGCGGATGAACAGACCGGCTCCGGTGGAGGTGTGCTACAAGAACATGAGATTTCTCATCACGCACAATCCCACCAACTCCACCCTCAGCAGCTTTAAAGAGGACCTGAAGAAGTATGGTGCTACTACagtggtgcgtgtgtgtgaggtgacCTACGACAAAACGCCCCTGGAGAAGGACGGCATCACCGTGGtgGACTGGCCGTTTGATGATGGAGCTCCTCCTCCCTCCAAGGTGGTGGAGGACTGGCTGAGCCTCCTGCGGAGGCGCTTCATGGAGGAACCAGGCTGCTGCGTGGCTGTGCACTGTGTCGCAGGCCTCGGCAGGGCTCCGGTGCTGGTGGCTTTGGCTCTCATTGAGTGTGGGATGAAGTACGAAGATGCGATCCAGTTCATCAGACAGAAGCGGCGTGGCGCGATAAACAGCAAACAGCTGACCTATCTGGAGAAGTACAGGCCCAAACAGAGACTGCGCTACAAACACCCGCACATCTTCAAGAGCAAGTGCTGCATCATGTGACCTGAACGCTGCACCTGACCCGAACCAAGCCGAACCGAACTTCTCAGACCGGGGTGCTCTTCGCTGAACTGCTGCTTAAGCAGAGCCCCGTTTGGTCTGAATGAATCCCTGTTGGTGCCTAAACCTCATCGCTCTCACCACGGAGTGAACACTGCCACGCCTCtcagagaggtcaaaggtcaccacAGGGTCTGTAAGGTGCACCAAAGAAGGTGACCTTTGACTGATTGACCAGCTGATATGGAGCCAAGGGGAATCATGGGAAACTTTTTGCCTGCTCACCTTTCTTTATCTGTGAAGTCTCAggtggtttcatttttcagccaTATCTGCTCAAGTCGTCTCAGATACTGCCGCTTACTCTTTAATTTCCCTGTGATGCGTAGGCATTTCGCGAGTAAGCTCAGCGTAGACATGGACTGAGAGGATTTATAGTAGGGCTCCTCTGAGTTACCGAAACTTCTTTGGCCAAAATCTTTGCAGCTTCTTCGAGAAAGATGTCGGCATGAGGAATAAATGAAGGCTTTTTGAACTCTGCATTAGAGTTGTGTGtaagactttttatttttattccacttctgccattattataattataattattattattattattgttttctacacgtccatgatattttctaatgaacttagaTAGATCTATTTCCCCcacagaaaaataaaccaaatgaaTGTAGTAAACATGTTGCGCACCACCACGCAAGCAGTCTGCTGAGTCCGGTGTGCGTCTGTGGTAATGAACATGAAGGACGGACTTGCGTCCTTGGGAAGTACGTTCTTGGCAAGTAACCTTGCAAAAATGATGTCACAAGGACACGAGAACAGAGAATGCACTTACGCGTGTTTGAGATTCGCTGTGCACTTGGTACTGCGCAAAAACGTTCGTCACTTATTTACAATCAGTTTAATCATCTGTATTGTACAAAAGCGTTTTGGTTTCCCTGGAAaacttttatataaatgtaagatTCCAAGGTGCAGTTTAAACTGTAAGTTTTAACTGACTGTTTAAGAATGTTGTAAAAgataatggttaaaaaaaaaaaaacattcacagttAACCAATGCCAAATTAGTGCTAGCTAAGTTAACAAATGTGGCTAGTACATCTAACGAAACGGACTTTTTCATATTATGCATTGTTTGTACCAAATGAGCAGATTTGACAGCTGTGTTATTAATTTCTCAGCCCTGTACCGTACGTCAAATTATGATTCATGTGAATCATTTAATGAAAAGAATGAAGCAGtattgcacaagcaagagtgcttTTATACTGAATATGTGATTCAGCTGCAGGTAtatcacaggtaatcacagccgtgccgcACACttgcgagtgtgatattgcttttatacaacagttctgttaataagaaattaatactGAGTAATCACGTTAGTGGACCAGagctaactgttgtataagaCAATTAAAAACTTACGAGTGCTCCACCATAGCGATGATGCCACAGTGAATCATGGGACTTTCCATTCGTTCTCATTGGCAAATCACCAATCAATGCCTCCTCAGTTTTTGGGGAGGTTCAAGAAAACTTccctttttttattgttctttggTACTTGTGTTCTTGATTACTGGAATGTAACTTGGGTGTTAAAAGATGACCTCAGCCATGGACACAGAAAAGAACACATATTGAGAAACACCCATGGCCTGGCTTTGTTGTTTGAGTTTCTTATCTGACCGCCAGTTCCTGCGACATTTTTGTTGGGATCCCAATCCCCATGCACACCTCTACtctgcatcacacactgtttatatcaTGTGTATTCTCCTTTAAGCGCAGAGCTTAATCCTTTCAGATGTCactttaatgtgtttcattGTAAAACTGAAAAGATCTTAAAAagttctgattttttaaaacctcaGGTCCTCACACGGCCTAAACAAGAGCTCATGAACTGCTTTAAGACGTCTCTCTCTGCTTTTGAACACATACCTCCTGCTGTACAGAGATGcttatgataataataaaggcTGATTATGAATCA

Function

symbol description
ptp4a3 Predicted to enable protein tyrosine phosphatase activity. Involved in positive regulation of NIK/NF-kappaB signaling; positive regulation of establishment of protein localization; and regulation of transcription, DNA-templated. Acts upstream of or within endothelial cell migration. Located in cytoplasm and nucleus.

NR:

description
PREDICTED: protein tyrosine phosphatase type IVA 3-like

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18041 PTP4A; protein tyrosine phosphatase type IVA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942339.2 False 3072 mRNA 0.44 6 5289830 5317844
XM_026942341.2 True 3163 mRNA 0.44 6 5289830 5310243

Neighbor

gene id symbol gene type direction distance location
LOC113543899 NA coding downstream 4222 5281297 ~ 5285608 (-)
LOC113543852 LOC108262220 coding downstream 13512 5268318 ~ 5276318 (-)
LOC117596412 LOC108262220 coding downstream 26557 5258555 ~ 5263273 (-)
LOC113543750 NA coding downstream 32358 5251116 ~ 5257472 (-)
LOC113543693 LOC108273363,LOC108262220 coding downstream 57779 5229267 ~ 5232051 (-)
rims3 rims3,LOC107672861,LOC107702460,LOC107598211,LOC107731575,LOC107571463 coding upstream 1159 5319003 ~ 5381426 (-)
glcci1a glcci1,LOC108414387,LOC107672859 coding upstream 73678 5391522 ~ 5427603 (-)
umad1 umad1 coding upstream 111117 5428961 ~ 5442861 (-)
asns asns,LOC107754811,LOC107731557,LOC107702657,LOC107672863,LOC108410560 coding upstream 222532 5540376 ~ 5549658 (-)
bloc1s4 LOC108272578 coding upstream 232534 5550378 ~ 5559011 (-)
G400622 NA non-coding downstream 10516 5278903 ~ 5279314 (-)
LOC113543905 NA non-coding downstream 47778 5240099 ~ 5242052 (-)
G400501 LOC108272940 non-coding downstream 253908 5030859 ~ 5035922 (-)
G400517 LOC108273316 non-coding downstream 277035 5012187 ~ 5012795 (-)
G400500 NA non-coding downstream 370947 4911350 ~ 4918883 (-)
G400676 NA non-coding upstream 53228 5371072 ~ 5380937 (-)
G400826 NA non-coding upstream 265711 5583555 ~ 5587381 (-)
G400913 NA non-coding upstream 493500 5811344 ~ 5812012 (-)
G401106 NA non-coding upstream 589303 5907147 ~ 5971174 (-)
G401196 NA non-coding upstream 703710 6021554 ~ 6021765 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 149450 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 281366 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 654773 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 951403 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 1130080 4150899 ~ 4159750 (-)
G400815 NA other upstream 269554 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 855144 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 1053773 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 1936589 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 2551559 7869403 ~ 7917693 (-)

Expression


Co-expression Network