glcci1a (glcci1,LOC108414387,LOC107672859)


Basic Information

Item Value
gene id glcci1a
gene name glcci1,LOC108414387,LOC107672859
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5391522 ~ 5427603 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942348.2
CACTGTTTGTAGTTGCCGCTATAGTTTCTGTCACTTGCAGCAACTTAAATGCTGGAAGCAAGTCGACCCTGAGAGATTTCTTTTCTAtgcacactttatttattttattttatttccatctaGCTCGCACCAAGAACTTTAGGAtcaatattttctatttataaCTTCTTACTaacttttttgttgctgttgttcaaGCTGGCAGTGAAGAATGCGTAAGAAAGAGGAAACAGACAGGCTTCATTAGTGAAAACATGCAGAAATAACTTAAGcctaactttttttatttatttattggagttTCGAATTTTTTGGACTATTAATAATCTATTTCTCAGCCTATATTTTTCCAAGCGGAACTGAAACTGCAGGATCCCAtcatgtcatcatcatcatcttcatcatcatcatcatcatcatcatgcaaCTCGACTCATcatcaacagcaacagcaacagcgGGCTAAAGGCAGCACGGGATCCCCCaccatctcatcatcatcatcatcatcatcaccatcatcatcatcatcatcagtcgtTAACGGCGCGAGCCGGTTGCTGCAGCCAGTCCGTGCCACGGTGCCGTACCAGCTGCTGCGCGGGAGCCGCCGctcctctccctcttcctcctcttcctcctcttcctcgtgTGCGTCAGCCGGGGGCGACGTCGCAGCACCGAGAGCGCCCGGTGCCGCCGCCGCGAGCCCGACGCGAGTAGTGACGCCGCTCGCGCGCCCGCCTGGAAACGGAAGCGGCCACGGCTCCGCGGACTGCGCCGCCGGGCTGATCGCGCGCTCCCCGCCGCCTGACCGCAAGGGCTCACCGGAGCGGCGCCCCGATTCACCTGCTTTCCGAGTTGAAAGGTCAAAAGGCCAGCAGGTGTGGATCAGACGCACCTCCTCTCTAGGCGCCATCACCGTCCCCTACCTGACCGGCCAGTGGCCCCGTGACCCCTACGTGCTCTACCCATCGTGCATGAAAGATAAATCCACACAGACTCCTGGATGCTGGAGTGAAGACTCATCAGAGGGAGAGCTGAGGAACACACACCAGCGCTCGGCGTCCTGGGGCTGCGCCGACCAGCTTAAAGAGATCGCTAAGCTCCGCCTGCAGCTCCAGCGCACTAAGCAGGGAGGAAGTCGCCATATTAAGGACGGTAGGGAGCTTCTGTCTCCCCTCCACTGCTGCATcttcaacaccacacacactaccagcAGCATGTCCAGCCAAGCCACGTCTCCCATGTCGAAGCCGGCACAGATGACCCTGCCCAACATCACTGTACCGAAACCGTCCATCTCACGAGTGCCCAGCAGCATGGAAGGCATCAACCACGAGCTGGAGAAAGTCTTTATTAAAGATAACGGAGAGAAGGAAGAGCTGAAGGCATTGGAGGTGCCTGATGGACGCCGTGCCCCATTTCCTCCTCAGCAGCGGAGTAGCAGTACGTGTGGTTTGGACTCTCAGACCCCGGCAGTACTCGGCCGCTCCAGCAGCTGCTCCAGCGCATCACCGTGTCCGGCAGGATCACACGACGGCAGCCCATACTCCACTGATGAGCTCCTCGACGACCGAGACAAAGACAGTGGCAGCAGCTCTCCTCTCCCCAAGTTTGCCTCTTCACCCAAACCCAACAACAGCTACATGTTCAAGCGAGAGCCTCCCGAAGGCTGCGAGAAGATCAAAGTGTTCGAAGAAACGACGTCGAGACAGTCCTCTACCACCCCCCTCTTCTCCTGCCCCGACAAAAACAAGGTGAACTTCAACCCCACTGGTTCGGCTTTCTGCCCTGTCAGAATACCCGGCTCTGTGCTTCAGCACTCAGCCTCCCAAGCTGAcgaagaggaggagggaggacaCCCAGGTGTTGTGACCTCCTCGGCCATGTACGCCCTGCTCCACcccactcaggtctccatcagcaCCAGCACAGACGATCCGCCAGAATCAGACGCCGCGTCTCCGTCCCAACAAGAGGcaccacacacaaactcagaaCTGTGCAGTTAGCTCGATTTGCCCAGAGCTGGTCTCTGTGGCACTTTGTGCCCTTCATAGGTTGAATAGATGCccccttttcctctctttctggACTGAAACTCCACCGTCTGCATGTCATAGTGACACACAAGGTTCCGAACACAAGAATTACGCTCCAGTTCAATCCGTCGTCACATCCGCCCCGTTTTCTTACGCACTGTTACTGACAGGGACTAAAAAGCTAAAAAGGCTATAGTGTGCAAGTGTGCAGTCTGTTTTTGGAGCAGCACCACAGAAGCCAgtaaagattatatatataataatacatatatatatatatctatatatgtagtattattattaatgttaaaataaagagTGTGAGGGTTTTATGGACcacaaaatatgcaaatgtaggTTCAATGTTAACcttaaaggaaagaaagaaaaaagagtgagctgtcatttttttctacagaagTCCCAAGAggccatactttttttttttttttgactctgtCACATTATCTCGAGATCACAATCTGTTTTCTTGCATAAAGATCATCCTTTTTGATTAGCTTTATTCTATAAGCCTAAACATTCAGTTTATTGTCTCAGTGAAACCACTTTCACAGGAAAAAATAAGTCATtatctcaagaaaaaaaagctgtggaTAAAAGTTGAAGAATCCTTGTTCAACTGCTTTTTCCCAGCACCTACCAGGTTAGGGAACAAACCACCAAGAAGTTATGCTAGCTGTGCTTTCAGCCTTACACATCAGCCTTACATGTGACGTGCAATCGAGCCTAGGTGAGGCAGGGATATCAGCCTTAGTTTTATGATTGCAATTGAAAAAAGGTTTTATGAAATATCCTGGCCATCTAACTGACATTAGCAGTGAAGGTTTGCAAATTTTATACATACAGGTTTAAACAATCTTCTCAGAAAtcttgtcaggttagctcagATTAGCAattattaaattacagtaaagaCATTAATGATTATGCCctaaaatcctgtcagaaatcctcTCAGATTATCTTTTATTACTgtgttagcagtgaagattatgaacaATAATGATTAAGACTTACAATTCCTGTCAGAattcctgtcaggttagctaaTATTAACTAGCTGGATTGTGTTAGCAATgaaaattatgattattaatgatCATGACTTAAAACCCTGTCAGAAATCCTTTCAGAATAGCTTATTTTTGTGAGCTAGCTAATCTTGGAAGGGAAGATGataaacattaacaataatGACCTAAAAATCCTTTCAGATATCCTGTCAGGCTAACCCGGTAAGGTAGCTGGCTAGAGTTAGCTGTGATTATGAAcacataaaatgatttaaaattcaTGTCAGGTTAGCCCATGTTAGCTGGCTATgaaatgatgagtattaatggtTATGATCTAAAATCCTTTCAGTTATCCTGGTAGCTCATATTAGCTAGCTGGTTGGAGGTAGCaatgaaaatgataaacatttataaataagatttaaaaatcctgtcagaaattcTGTCAAattagctaatgctagctagctgactagtgTTAACAgtgaatattataaacatttacaaatatgatttaaaaatcctgtcagaaatcctcTCAGGTTAGCTCTTGCCTacaaagtggatttttttttttttacattttgttttgagAAAAACAAATCGTAATTTCGAGTTAATAAGGTAGTGATATAATAATCCACGGCCTCTTGGGACTTCTGGGTTTTGCTACTATATTCTCATCTTATTTATACAGTTTGGCATTGAGTTCTGCTCACACTTTTTGGATTCGCTTTTTTGGtgtgattcattttctcactgATGTGGATCTGAATGATTGCACAGCTTCGCTTTCTGTTGGGTGAGTGAAATTCAAGCAAATAACTGCTTAACTTAAGCGGGATAACTCCTTTTTCAGCTACAACACAGAAATGATTGCGTTTAGTGGAGAAAAAAACGTTACATCGAAAGGCTTCAGGAAGGGTTTAATAGGGTCGGATGCATGTATCTGAAATTGATCATATATGTTGACGCTTACAGTGTcatgtctgttttctttttttttaacatccacAGTATGAATAAGCTC

Function

symbol description
glcci1 Predicted to be active in cytoplasm.

NR:

description
PREDICTED: glucocorticoid-induced transcript 1 protein-like isoform X1

GO:

id name namespace
GO:0003094 glomerular filtration biological_process
GO:0072015 glomerular visceral epithelial cell development biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942348.2 True 4112 mRNA 0.45 9 5391522 5427603

Neighbor

gene id symbol gene type direction distance location
rims3 rims3,LOC107672861,LOC107702460,LOC107598211,LOC107731575,LOC107571463 coding downstream 10096 5319003 ~ 5381426 (-)
ptp4a3a ptp4a3,LOC108272580,LOC107702466,LOC107571462,LOC107738588,LOC107598212,LOC105902033,LOC107731571,LOC103031245 coding downstream 73678 5289830 ~ 5317844 (-)
LOC113543899 NA coding downstream 105914 5281297 ~ 5285608 (-)
LOC113543852 LOC108262220 coding downstream 115204 5268318 ~ 5276318 (-)
LOC117596412 LOC108262220 coding downstream 128249 5258555 ~ 5263273 (-)
umad1 umad1 coding upstream 1358 5428961 ~ 5442861 (-)
asns asns,LOC107754811,LOC107731557,LOC107702657,LOC107672863,LOC108410560 coding upstream 112773 5540376 ~ 5549658 (-)
bloc1s4 LOC108272578 coding upstream 122775 5550378 ~ 5559011 (-)
pard6gb LOC108272576 coding upstream 132377 5559980 ~ 5598363 (-)
dtnbp1b dtnbp1b,LOC108272579,LOC107754801,LOC107731565,LOC108435503,LOC107568291 coding upstream 386301 5813904 ~ 5846278 (-)
G400676 NA non-coding downstream 10585 5371072 ~ 5380937 (-)
G400622 NA non-coding downstream 112208 5278903 ~ 5279314 (-)
LOC113543905 NA non-coding downstream 149470 5240099 ~ 5242052 (-)
G400501 LOC108272940 non-coding downstream 355600 5030859 ~ 5035922 (-)
G400517 LOC108273316 non-coding downstream 378727 5012187 ~ 5012795 (-)
G400826 NA non-coding upstream 155952 5583555 ~ 5587381 (-)
G400913 NA non-coding upstream 383741 5811344 ~ 5812012 (-)
G401106 NA non-coding upstream 479544 5907147 ~ 5971174 (-)
G401196 NA non-coding upstream 593951 6021554 ~ 6021765 (-)
G401230 NA non-coding upstream 669376 6096979 ~ 6187263 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 251142 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 383058 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 756465 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 1053095 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 1231772 4150899 ~ 4159750 (-)
G400815 NA other upstream 159795 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 745385 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 944014 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 1826830 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 2441800 7869403 ~ 7917693 (-)

Expression


Co-expression Network