asns (asns,LOC107754811,LOC107731557,LOC107702657,LOC107672863,LOC108410560)


Basic Information

Item Value
gene id asns
gene name asns,LOC107754811,LOC107731557,LOC107702657,LOC107672863,LOC108410560
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5540376 ~ 5549658 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942378.2
TGACATCCGCGGTTGAATTTCATCATGCGCACTTCTGGCTCGAGCGTGTCCGCTCCAGGCCACCGTAGCGGAGActcatctctctcatcctgGGTAAAGCAGCAGAAACACAATGTGTGGTATATGGGCCTTGTTTGGCAGTGATGAGTGCCTGTCAGTTCAGTGCACCTGTGCCATGAAGATCGCACATAGGGGTCCGGATGCTTTCCGCTTCGAAAATGTCAACGGTTTCACCAACTGCTGCTTCGGCTTCCACCGCTTGGCCATCGTGGACCAGCTGTACGGGATGCAGCCGCTACGCATTAAGCGCTTCCCTTACCTCTGGCTCTGTTACAATGGCGAAATCTACAACCACCATCGGCTGAAAAAGCACTTTGAGTTCGAGCACCAGACCAAAGTGGACGGAGAGATCATCCTCCACCTGTACGACCGCTTCGGCGTCGAGAAGATGGCGTCGCTGCTGGACGGAGTGTTCGCCTTCGTGCTGCTGGACACGGCCAATAGGAAAGTTTTCCTGGGGAGAGACACGTACGGCGTCAGGCCTTTGTTCAGGATGCTGACTGAAGATGGCTTCCTCGCCGTGTGTTCAGAGGCCAAAGGCTTGACCCAGATCATGCACTCCATGTCGAACCCTGTGAAGATCACCCCATTCCTACCAGGCCACTTCGAGGTGTTTGACCTGAAGCTGAATGGAAAGGTGGAGTCTGTTCAGCTGGACCGGTTCCACTGCTGCACCGAAGAGCCCAAACATGCTGCCTACGACAACGTCGAGAACCTTGGCACGGGTTTCGCTCTGGAAACAGTAAAGAGCAACATCAGGATCCTGTTTGAAAACGCTGTGAAGAAGCGCCTCATGGCCCACAGGAGGATCGGCTGCCTCCTGTCAGGTGGTCTTGACTCCAGCCTCGTCGCTGCTATGCTTGTTAAGCTAGCCACGGAGGAGCAGCTGCAGTATCCCATTCAGACGTTTTCAATCGGGGCAGAAGACAGTCCAGACGTTATAGCTGCACGCAAGGTTGCAGCTCACATAGGCAGTGAGCACCACGAGGTGAATTTCACCCCAGAGGAGGGCATCCGCGTGCTGGAGGAAGTTATTTTCCACTTGGAGTGTTACGACATCACCACAGTGCGCGCGTCAGTTGGCATGTATCTGATCTCTAAATACATCCGAGAGAAGACGGACAGCGTGGTGATTTTCTCTGGTGAGGGATCTGATGAACTGACGCAGGGCTACATCTACTTCCATAAGGCTCCATCGGCCAAAGCTGGAGCGGAGGAAAGTGTGCGTCTGTTGAAGGAGCTTTATCTGTTCGACGCGCTGAGAGCAGACAGGACGACAGCCGCACACGGGTTGGAGCTGAGAGTGCCCTTCCTGGACCACAGGTTCACCGCATACTACCTCTCTCTGCCTGAGGAGCTGAGGACGCCCAAGGATGGCGTGGAGAAGCATCTTCTGAGGGAAGCGTTCAAAGGACTGAATCTGATTCCTGACGAGATTCTGTGGAGACGCAAAGAGGCTTTCAGTGACGGACTGACTTCCGTGAAGAAGTCCTGGTACATGAGCTTGCAGGAGCACATCGAGTCTGAGGTGAACGACACCGAGTTAGAGAAAGCGGCCGCGTTGTTCCCCTACAACCCTCCCGCTACCAAAGAAGGCTTCTTCTTCCGGCAGATCTTCGAGAAGCTTTACCCGGGACGCTCCGAATGGACGCCGCATTACTGGATGCCTCGATGGATCAAAGCTACAGACCCCTCGGCCAGAACCCTGTCCATTTACAAACCAGACAAAGATCAGTAA
>XM_026942379.2
ATGTGTGGTATATGGGCCTTGTTTGGCAGTGATGAGTGCCTGTCAGTTCAGTGCACCTGTGCCATGAAGATCGCACATAGGGGTCCGGATGCTTTCCGCTTCGAAAATGTCAACGGTTTCACCAACTGCTGCTTCGGCTTCCACCGCTTGGCCATCGTGGACCAGCTGTACGGGATGCAGCCGCTACGCATTAAGCGCTTCCCTTACCTCTGGCTCTGTTACAATGGCGAAATCTACAACCACCATCGGCTGAAAAAGCACTTTGAGTTCGAGCACCAGACCAAAGTGGACGGAGAGATCATCCTCCACCTGTACGACCGCTTCGGCGTCGAGAAGATGGCGTCGCTGCTGGACGGAGTGTTCGCCTTCGTGCTGCTGGACACGGCCAATAGGAAAGTTTTCCTGGGGAGAGACACGTACGGCGTCAGGCCTTTGTTCAGGATGCTGACTGAAGATGGCTTCCTCGCCGTGTGTTCAGAGGCCAAAGGCTTGACCCAGATCATGCACTCCATGTCGAACCCTGTGAAGATCACCCCATTCCTACCAGGCCACTTCGAGGTGTTTGACCTGAAGCTGAATGGAAAGGTGGAGTCTGTTCAGCTGGACCGGTTCCACTGCTGCACCGAAGAGCCCAAACATGCTGCCTACGACAACGTCGAGAACCTTGGCACGGGTTTCGCTCTGGAAACAGTAAAGAGCAACATCAGGATCCTGTTTGAAAACGCTGTGAAGAAGCGCCTCATGGCCCACAGGAGGATCGGCTGCCTCCTGTCAGGTGGTCTTGACTCCAGCCTCGTCGCTGCTATGCTTGTTAAGCTAGCCACGGAGGAGCAGCTGCAGTATCCCATTCAGACGTTTTCAATCGGGGCAGAAGACAGTCCAGACGTTATAGCTGCACGCAAGGTTGCAGCTCACATAGGCAGTGAGCACCACGAGGTGAATTTCACCCCAGAGGAGGGCATCCGCGTGCTGGAGGAAGTTATTTTCCACTTGGAGTGTTACGACATCACCACAGTGCGCGCGTCAGTTGGCATGTATCTGATCTCTAAATACATCCGAGAGAAGACGGACAGCGTGGTGATTTTCTCTGGTGAGGGATCTGATGAACTGACGCAGGGCTACATCTACTTCCATAAGGCTCCATCGGCCAAAGCTGGAGCGGAGGAAAGTGTGCGTCTGTTGAAGGAGCTTTATCTGTTCGACGCGCTGAGAGCAGACAGGACGACAGCCGCACACGGGTTGGAGCTGAGAGTGCCCTTCCTGGACCACAGGTTCACCGCATACTACCTCTCTCTGCCTGAGGAGCTGAGGACGCCCAAGGATGGCGTGGAGAAGCATCTTCTGAGGGAAGCGTTCAAAGGACTGAATCTGATTCCTGACGAGATTCTGTGGAGACGCAAAGAGGCTTTCAGTGACGGACTGACTTCCGTGAAGAAGTCCTGGTACATGAGCTTGCAGGAGCACATCGAGTCTGAGGTGAACGACACCGAGTTAGAGAAAGCGGCCGCGTTGTTCCCCTACAACCCTCCCGCTACCAAAGAAGGCTTCTTCTTCCGGCAGATCTTCGAGAAGCTTTACCCGGGACGCTCCGAATGGACGCCGCATTACTGGATGCCTCGATGGATCAAAGCTACAGACCCCTCGGCCAGAACCCTGTCCATTTACAAACCAGACAAAGATCAGTAACAACTTGTAATTCTATTCCAAATACTGCATCACATTGTTACATCAAGCCTTTCTCTGACTTTCTGTTCTACGATAAACACAGCATGCAAGAGTTTACCAGGTCAGAATACTGCGTCATCCGGCGTGCCTTTTATAACAAagcataacatttaaaatagctttaaaaatgtttactttgTACGGAATAATACACTTGGGgacgtgttgttataggaaaataatcgtgGTGTGATATATCCCAATGTGACGCAGcattactgttgattattttccaataccagcatatcccaaagtgttttattccgcttataaTGCAGAACGAAATGTTAcactttttatgcttttatagtTGTGGAGTACCCGCATAGCAGCTAGaaatagttgttccctcactttctcttgaagataataaaacgaaaagaaatgcagcttgttagtTATAGCGTTACCTCTATACCTGGAGACTCCgttcaaaaatgttaaatgttacatctcctaacagaaaactagATAACATGTTTCTTTGTTATCTATTGTTCGACTTAGATTACatgtcatacaagtccctatgaattaGCCGTtgccatagaaacgataatgcgcacattgcagccagaactactgtccgagctgctgttatggaaaactaatcaacacctcctgaccaatcagataaaattcaacagcgctgtggtgtcattaaaaataaatcgactatacagcatacagtacacacaacaAGGATTAAGGAACGGGAATAATTCAGGGAACAAAGCatgaatttttattcattactcaTTATTGTAATTTggagcaaaataaaacatttaaattgtgttttaaatCTTGTTATACTGTGAACTGTGACGTCCCATTTTTGTAATCGCTTTTTCGACTGCCTCAAGCAAAAGTAACCCAAAGGTACTCTGTTATTGTAATAATCCTAATAATACAGCACTTATTAAccatttaatgattttttttaaagtactgaTTCATGAGCATTTAAACCTGATTTGTGATTCCATGGCATTCTGCCTAATAATGTGTAAGAATATCTTAACGCAGTAAATGAAAGTTTGACTCTTG

Function

symbol description
asns Predicted to enable asparagine synthase (glutamine-hydrolyzing) activity. Predicted to be involved in asparagine biosynthetic process. Predicted to act upstream of or within cellular amino acid biosynthetic process and glutamine metabolic process. Predicted to be active in cytosol. Is expressed in liver and male organism. Orthologous to human ASNS (asparagine synthetase (glutamine-hydrolyzing)).

NR:

description
asparagine synthetase [glutamine-hydrolyzing]

GO:

id name namespace
GO:0070981 L-asparagine biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity molecular_function

KEGG:

id description
K01953 asnB, ASNS; asparagine synthase (glutamine-hydrolysing)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942378.2 False 1798 mRNA 0.54 12 5541465 5549658
XM_026942379.2 True 2775 mRNA 0.47 11 5540376 5547849

Neighbor

gene id symbol gene type direction distance location
umad1 umad1 coding downstream 97515 5428961 ~ 5442861 (-)
glcci1a glcci1,LOC108414387,LOC107672859 coding downstream 112773 5391522 ~ 5427603 (-)
rims3 rims3,LOC107672861,LOC107702460,LOC107598211,LOC107731575,LOC107571463 coding downstream 158950 5319003 ~ 5381426 (-)
ptp4a3a ptp4a3,LOC108272580,LOC107702466,LOC107571462,LOC107738588,LOC107598212,LOC105902033,LOC107731571,LOC103031245 coding downstream 222532 5289830 ~ 5317844 (-)
LOC113543899 NA coding downstream 254768 5281297 ~ 5285608 (-)
bloc1s4 LOC108272578 coding upstream 720 5550378 ~ 5559011 (-)
pard6gb LOC108272576 coding upstream 10322 5559980 ~ 5598363 (-)
dtnbp1b dtnbp1b,LOC108272579,LOC107754801,LOC107731565,LOC108435503,LOC107568291 coding upstream 264246 5813904 ~ 5846278 (-)
csnk2b csnk2b,LOC102207154,LOC100710962,LOC101175345,LOC102778826,LOC106573472 coding upstream 525918 6075576 ~ 6082184 (-)
prrc2a prrc2a,LOC103472915,LOC104953786 coding upstream 535251 6084909 ~ 6105333 (-)
G400676 NA non-coding downstream 159439 5371072 ~ 5380937 (-)
G400622 NA non-coding downstream 261062 5278903 ~ 5279314 (-)
LOC113543905 NA non-coding downstream 298324 5240099 ~ 5242052 (-)
G400501 LOC108272940 non-coding downstream 504454 5030859 ~ 5035922 (-)
G400517 LOC108273316 non-coding downstream 527581 5012187 ~ 5012795 (-)
G400826 NA non-coding upstream 33897 5583555 ~ 5587381 (-)
G400913 NA non-coding upstream 261686 5811344 ~ 5812012 (-)
G401106 NA non-coding upstream 357489 5907147 ~ 5971174 (-)
G401196 NA non-coding upstream 471896 6021554 ~ 6021765 (-)
G401230 NA non-coding upstream 547321 6096979 ~ 6187263 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 399996 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 531912 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 905319 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 1201949 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 1380626 4150899 ~ 4159750 (-)
G400815 NA other upstream 37740 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 623330 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 821959 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 1704775 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 2319745 7869403 ~ 7917693 (-)

Expression


Co-expression Network