fam91a1 (fam91a1,LOC107724353,LOC107702086)


Basic Information

Item Value
gene id fam91a1
gene name fam91a1,LOC107724353,LOC107702086
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 9586308 ~ 9612307 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942383.2
GTGACGAAAGGGGTTGCTTAAAAATACGACAAGGAAGTGGACGTTCAGGAGCGTCGGTTAAATCCTATTCAAAGGAGTAAAAATAACAGATTTTGTTCTATTTTGAAGGGTGTAGTGAGTGTCGGGAGGGTTCAGTCGGCTTTGGACTGACCCGGAAACCCGCTGCTAGCCGTTTTAGCTGCATAACAGCGGATACAGCGATGAACACAGACGTGGAATTTCACATCAGGCAAAATTATCCGTGGAACAAGCTGCCAGCCAATGTCAAGCAGAGCCTTGGAAACTCACAGAGGGAGTATGACAAGCAGGTCTTGCTGTACAGCATACGAAACCAGCTGCGGTTCCGCAATAACCTGGTCAGGCATGTGAAGAAGGATGAGCGGAGCTATTATGAGGAGCTGCTGAAGTACAGCCGTGAGCATCTGATGCTGTACCCATACCATCTGTCCGACATCATGGTCAAAGGGTTGCGGATCACTCCCTTCTCCTACTACATCAGCATCATGGAGGATATTATGAACAGTGAGAAGAGCTACGACTCTCTGCCCAACTTCACTGCTGCTGACTGTCTGAGGCTTCTCGGCATTGGGCGGAACCAATACATCGATCTGATGAACCAGTGCAGGTCATCcaaaAAATTCTTCCGTAgaaaatcagcaagggatctTCTGCCAGCCAAACCAGTGGAGATCTCAGTGGAGCCGTGGTGGGTAGCGCAAACCGGCTACATCACCGAGGACGACATAAGGATCTGTTCTTCAGCGGAGAAGAGGGCCATTGATAAGATGATTGATTCCGGACCCCAGCTGGCTGGATCAATGGAGTACAATGTGGTTCTGAGTCTGTATAACAGGGGCTTTATATACCTTGATGTGCCCATATCGGATGACAGCTGTATATCAGTGCCACCTCTGGAGGGTTTCGTCATGAACAGGGTCCAGGGTGATTACTTCGAGACACTGTTGTACAAAATCTTTGTGTCCATTGATGAGCAGACCAATGTGTCAGAGCTGGCGAACGTACTGCAGATTGACTTGGGCCTGGTGAAGAATGCTGTGTCCATGTACTGCCGACTTGGTTTTGCCATCAAgaaaggtcaggtgatcagcccCGACCAGCTGCACCCGTCATGGAAAAGCGCTCCCTCTGTCAACAGACTAAAgggcACTATGGACCCTCAGAAGATGCTGCTGTCCTGGGAGGGGGGCAGTCCAGTAATGGAGGCTGGTTCCTCCGCTACTGACACAGACACCACCAGTTTGGAGGACCAAGacacCGTGAGTGTGAGTAGTTTAAGTATTCCTGCGGCCCCTACAAAGAGAATCGCCTTCCTGTTTGATTCCACCCTCACAGCCTTCCTCATGATGGGCAACCTTTCCCCCAATTTAAAGAGCCATGCAGTGACCATGTTTGAGGTGGGGAAGCTGTCAGATGAGACCCTGGACAGTTTTTTGATGGAACTGGAAAAGgtggaGAGCACTGCTGAAGGAGAAGCTCAGAGGTATTTTGATCATGCACTTACCCTCAGGAACACAATACTCTTTCTGCGCTACAACAAAGAGCTCACTCCTGATCAGGGCCCTGACATACCAAATATAGGCCTGCCTTTGGACCTCCTCCGATGTGAGAGTCTGCTGGGATTGGATCCTGCCACCTGCAGCCGGGTGCTCAACAAGAACTACAAGCTGCTGGTTTCCATGGCGCCACTAAGCAATGAGATCCGGCCAATCAGCAGCTGTACACCTCAGCACATTGGGCCAGCAATCCCTGAGGTCAGTTCCATTTGGTTTAAGCTGTATTTGTACCATGTGACTGGCCAGGGCCCTCCCTCTCTGCTGCTGTCCAAGGGCTCTAGACTACGGAAACTACCAGACATTTTCCAGGCCTACGATCGGCTCCTCATCACGTCCTGGGGTCATGACCCTGGTGTGGTGCCCACATCAAATGTCCTGACTATGCTGAACGATGCCTTGACTCACTCTGCGGTGCTCATACAGGGCCATGGCATGCATGGTCATGGGGAAACAGTTCATATCCCCTTCCCTTTTGACGAAGAGGACCTCAAAGGAGAATTCTCCTATTCCAACATGTGTGCACACAAGGCCCTGAAGATCCTGCGTGAAAAAGTGGATCTGGAGCACCAATGTGGCTACATCACAATGTTAAACTGCAACAACAGGAACCGCCGCAGGCCTAGTGACGCAGACGCGGCTGGAGACCCCGAATTTGGTACAGGGTTTGATGCCAATGGAAGCAGCGAGTCTTTTGAGCTGGTTACTGAGGAGAACAATGGGGACGGCAGTAAGAAGCAGGGAACAGAGGGGTCTTCCAGTGAGGACGAGTGGGTACCTTTGGAGCTGTGCTTTGGAATGCCGCTCTTCAGCTCGGAGCTAAACCGTAAAGTGTGTCAGAGGATTGTCTCACACAAACTCTGCAGCAAAGACAGTCTTCAGGAACTACTACATTCCAGTCGAAAGCTGTCCTTGAAAGTTCTGAGTTTTGTCCAATCATTCCAAGATTGTAGCCATTCCGGTGACCCGGACAGTGGGGTAGCAGGGCCTCTTTGCCAGCCGCCGGCTGAGTCTGGCGTCCCCCTCCCTGCCATAAACCTCCTCTTTAAGGACGGGCAGCTGAAGGAGTGGAGCGGGCGAACCCCGCCTTCCCTCCACCTCTCCACCATACAGAGAGACCAGCCCACATAAAACCACACCCTCAACCTCTCaaaaaaacatctacacaccAGTCACCTTCACACCCAGTCCCACTCATCCCGATCGATTCTCGAGCTAGTAGTGTTACTGTCTTGGCTCTGTTTCGGTACAGCCGAGCGTAACACTCTATGCTCAATCAGTGATCTGGACATGATCGCACCCCTCATCAGCTGTCACTCTATGTTGAGTTTATTCCGTATAGAAATACAAAATACTCTCACATAAGTGTGACTTTGCTTGGAAAAGAATAGGACAAGCCCTGTGGTTGGATGAAGTCACCCAGGTCTCTTGTAATATGCCTATTTGTACTGTCATGTCATGTGACCTGATGCATGATGTCATTGCACAAAATCTCAGAAGAGCAACTTGACAAAATGGTTTGAATTGGTGGCCATGAAAATGGGGTTTTTACTTTTGCACAAAGTCTGTTGATTTTCCtttacgtgtttttttttttttttttttttttcattaactcTTGCTCTTTATTTGAGAGAGATTTAAATTTCCTCATACTTTTTCACTGTCATCATTTTTGGATAGCCAGAGCATAGGAGCAAAATATGCTTTCAAATTCATTTCTTGCTGTTGTATCACCAAagattcatctttttttttttttttttttaatttttaatttttttcgaCAGCAATTTTAGTGTTATTTTGCAGCATTATACAGGAATTGCTCGGTTCCCAGGAGACTGAAATCAACTGTGTGCTTGTGTACTCGATGGTGTGAGACCTATTCAGCAGCCTGTTTAAGGAATTACTCATTTGAATTGAGTTTACAGCTGTTTTGGAGTCCAGTGGGTATCATCCAAAGCCTGGCTCTCCCACAAACATGGAAGATCATTCTCTGTAATATTCCTACCAATCTCTTTGGTTATAATGTAGCGTTGCTACTATGTTAAATCATGTAGCCAATCAGGCTCCATTTCCCTTTTCTGACTCTATAGTCATGGTTATTAATGATTGCCATGAGATCTTGGTGCAGCATGATGAGTGTTTAGAAAccattgtgtgtattgtgcatcGTTCTTGCACCTTCTTTCCCCACCTCCTTTCTTTCCCACGTTCCCTTTCGCTGAACTCCTATTTGTGCCCCACGGGATCTTCTCCTTTGGAAAACCTGAACCCCGCCCATTTCCCTGTTCCTAATCCATCTCAGTGTTAGAGAAGAACTTGTTAGTTTTATAATGTCGATCTGCATTTTAGGAACTCTTTGTTGTAGGGTGTTTGATGGGACTGTGAATAATTCTCTTGTAATTAAATGGGTCTAAAAATGACATTCCCTCTCACACCACCCCCCTCCCAAAAAAATGGCATACCAATATGTACAAAGTATAtgataaatctaaataaataaaaatggtgcaACAATGTTCCCCCAAAAACCCATTTACACATGCAGTGCTTGTCTGGTGCTGTAATTGCTACTGAAACACAAATGCAGGGTGTCGGCAATGGGTCAGCAGATGATGACGCATAAAAATGCAACAGTCTGAGCAAAGGTGAGAGTATAAAATGAGCAGGACtgaatgtttttctctctgtgtttcatcATCTTGTGCCTGAATATTTTCCTTCACTGCAttcaaatgtaatgtttatacaTGTATGGCACCCTTCAGGTGGTATTCTATGATATACAAACTTGCCTGAAAACTACACTTTcctgaaatatgtttttcttttgaatgtATCTCAAGTGAAGTTATagcatttaaagaaatctgTTTACTCCCAAAcgtgaaaaggaagaaaatcacatttaaggATTCCATTCCAAAGAAGAAGCTTTTATTCATCACATATATATTATAGCACAGAGAAATTCTTtccttcacatatcccagcatCCCTGAGCAGGGACGTTAAATGCATTGcttaagggcccaacagtggcaatttggcagtgctggggcttgaaccccaaTCTTCTGATCATTAACCATAACTATACACATAACTATCTAACATGTTAAAGTTCTCAAATTGTGACATggactgtgtgaggaaatcacacttagctagtaagggtttagacatctttaggtaGAGTGAGTATTTTTAGAGTTAAAGAGAGTCTATGcaggattaaaaagtaaataaaaacatttactcattGTTTTTGGCTGA

Function

symbol description
fam91a1 Predicted to be involved in intracellular protein transport and vesicle tethering to Golgi. Predicted to be located in Golgi apparatus. Predicted to be active in cytoplasmic vesicle and trans-Golgi network. Orthologous to human FAM91A1 (family with sequence similarity 91 member A1).

NR:

description
protein FAM91A1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942383.2 True 4853 mRNA 0.46 24 9586308 9612307

Neighbor

gene id symbol gene type direction distance location
lratd2a LOC108272401 coding downstream 3416 9581212 ~ 9582892 (-)
adgrb2 adgrb2 coding downstream 580977 8615005 ~ 9005331 (-)
col16a1 col16a1,LOC108272916 coding downstream 1041448 8452086 ~ 8544860 (-)
smap2 smap2 coding downstream 1168911 8394523 ~ 8417397 (-)
pip4p2 tmem55a,LOC107702130 coding downstream 1648098 7927445 ~ 7938210 (-)
spire1a LOC108273070 coding upstream 14986 9627293 ~ 9669455 (-)
si:ch211-215i13.3 NA coding upstream 60467 9672774 ~ 9678951 (-)
atp6v1c1b atp6v1c1,LOC108273274,LOC108424992,LOC102305030,LOC102207943,LOC100703061 coding upstream 69606 9681913 ~ 9693188 (-)
txnl4a txnl4a,txnl4a.S,txn4a,LOC106570226,LOC106570228 coding upstream 83757 9696064 ~ 9700029 (-)
adnp2b LOC108273309 coding upstream 89497 9701804 ~ 9711107 (-)
LOC113543915 NA non-coding downstream 209269 9376926 ~ 9377039 (-)
G402674 sfpq,LOC106570021 non-coding downstream 444485 9139017 ~ 9141823 (-)
G402405 NA non-coding downstream 971504 8612118 ~ 8614804 (-)
G402142 NA non-coding downstream 1064264 8521358 ~ 8522044 (-)
G402129 NA non-coding downstream 1078182 8449495 ~ 8508126 (-)
G402892 NA non-coding upstream 7823 9620130 ~ 9620599 (-)
G403080 NA non-coding upstream 118376 9730683 ~ 9731257 (-)
G403072 NA non-coding upstream 147338 9759645 ~ 9760497 (-)
G403086 NA non-coding upstream 152367 9764674 ~ 9764904 (-)
G403134 NA non-coding upstream 250726 9863033 ~ 9863314 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 170055 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 301815 9227395 ~ 9284493 (-)
G402673 NA other downstream 424838 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 1668615 7869403 ~ 7917693 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 2309526 7254433 ~ 7276782 (-)
si:ch73-347e22.4 NA other upstream 2165062 11777369 ~ 11790179 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 2533291 12145598 ~ 12256372 (-)
G404644 NA other upstream 2818688 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 2903009 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 2958157 12570464 ~ 12570536 (-)

Expression


Co-expression Network