e2f3 (LOC108272398)


Basic Information

Item Value
gene id e2f3
gene name LOC108272398
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 7198361 ~ 7205064 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942389.2
CCGCATCCCCCTTCATTCATTGTCCGCTTCCTGGAGCCATTTTTTCTGAAGCGGCTCCGAGGGAAGTTCGCCTGGTCGTTTTTCTCGCTTCCATCTGCTGCTTTTTCGCTACCGATCTTTGCACATCTTGATCGAAATGAACACATAAGACTCTCCTTTCTCGATATCTAtgattattttgtgtgtgcgttGGTGCGATTTTTAGTAAAAGATCATCGAAGAAGGGGAGGCACAAAGGGAGATCTCTGAAGATGAGAAAGGGGGTCTCCTCGGTCTCAGACAGAGCGATTATATCAGCCGCTCTTATTGAGCCGAATATGGGCTTGATTTCGGGCTCCGATCGCCGCTCTGCAGTTTATCCCACACACATCCAAATGATCACACCGCCTTCACAGCCTAATCATGTCCGGGTGTCTTCATCTGGCAGCTTGTACACAACTCCTCTCCAAGGATCTGCAAACGGCACCGGCTTGCGACCTGCTTTAGGACGACCTCCGGCCAAAAGGCGTTTGGAGTTGGACGTCGCAGATCACCAGTACAGTGAACCGGCCCGAACACCAAGAGGTCGCAGAGCAGCTCTCCGAATGAAGAGCCCTAAAGCTCCTAAAACCCCACCAGAGAAGTCCCGCTATGACACATCCCTCGGCCTTCTGACCAAGAAGTTCTGCCAGCTGCTGGCTCAGTCTTCAGATGGCGTGTTGGATCTGAACCAGGCCGCTGACACACTCAATGTCCAGAAGAGACGCCTGTATGACATCACCAATGTGCTGGAGGGCGTGCGTCTCATCAAGAAGAAATCAAAGAACAACATCCAgtggctGGGCTCGACTCTGCCCTCAGAATCAGGGCCGCTGTGTCCACTCGGCCCTCTGCAGACTCTGAGCAGAGAGATGCTGGCCCTGCGAGACGAGGAGAGACGACTGGACGAGCTCATTCAGGCCTGCACTAACAACGTGCAGCAGATGACTGAGGAGATGCACAACCAGAAGTATGCCTACGTCACGTACCAGGACATCCGGAGAATCAAAAACTTGCAGGATCAAACTGTAATTGCTGTTAAAGCACCATCAGAAACTAAACTGGAGGTTCCTGACCCAAAGgagAGTTTACAGGTGCATCTGAGCAGCTCTAAAGGCCCCATCGATGTGTTCCTCTGCACGGACACCAGCGAGTCCAGCACTCCCCTGCGCAATGGTGTGGACGTGAACGGGAACGACACTGCCTTCCTCCGAATGTCCAGAGAAGACACCAAAGACACAGAAATGGCTGATTCTAACCAGTCAAACAGCAGCGTGACGCAGACCGGCACGGCACCTTTGTCTCCCTTCAGCTCGTCTCTGTCCTCCATCCTGGGCCCGTTCGTGACGCTCTCGCCTGCGCTGCTGGGAGATGAGTACCCGCTGGGCATGGACGAGGAGCAGGGCATCAGCGACCTGTTCGACTCCTGCGACCTGGACATGCTGCCTCTGGATGAGCTGCTCATGGTGTGAGCCTGCAGGTGAACAGGAGATGGTTTACGTgtcatttgttgtttttgttttgtttttttaaataggggAAAAATGGACTTGTTTGATGAAATGCGCTGGTTGAGTCTGGATCAGTTGGACTTTTGGATCGCCAGTCACGACTGGTAGTTttgatatgttttgttttttgtttttcattctgtaAATCCAGAGGGAATGTTTTTTTAAGCGTGATGTTTGCATAGTGTAGTGGATGTTGAAAGCTTTTTGGACGTGATGTCTGCAGTTGAGCCACCAAGCTAAAACCTGGTAACCAGGTAGTTTTATTTCGCATCGCAAACTTGGTTTGCTTCAGCAGCTTTGTCTGATTTGCATTTACAGACAAAACAAATTCCGCATAACAGCTATACTAGATCAAAACTACCCAGTGGAGAACTTTTCATTTCAGGGCTTGATTTCTACAAAGGTAAAATACTAAGCTAAATACTGCTACCTGTTGTGTTAAATAGGA

Function

NR:

description
PREDICTED: transcription factor E2F3-like

GO: NA

KEGG:

id description
K06620 E2F3; transcription factor E2F3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942389.2 True 1980 mRNA 0.50 7 7198361 7205064

Neighbor

gene id symbol gene type direction distance location
sox4a sox4,LOC108273322,LOC106925895 coding downstream 218071 6979059 ~ 6980290 (-)
nrsn1l LOC108272414 coding downstream 417438 6775979 ~ 6780923 (-)
ndufs6 ndufs6 coding downstream 452899 6742722 ~ 6745462 (-)
irx1b irx1 coding downstream 514866 6679309 ~ 6683495 (-)
ube2ql1 ube2ql1 coding downstream 587422 6598286 ~ 6610939 (-)
srfbp1 srfbp1 coding upstream 2481 7207545 ~ 7213295 (-)
eif3i eif3i,LOC107691510,LOC107709286 coding upstream 248674 7453738 ~ 7464458 (-)
txlna txlna,LOC108433836,LOC107687085,LOC107562872,LOC107576061 coding upstream 261981 7467045 ~ 7476978 (-)
kpna6 kpna6,LOC107584279,LOC107745716,LOC107562870 coding upstream 276761 7481825 ~ 7501213 (-)
khdrbs1b khdrbs1,LOC103045134,LOC103472039,LOC106924560,LOC106945640 coding upstream 539760 7744824 ~ 7756061 (-)
G401577 NA non-coding downstream 217786 6920630 ~ 6980575 (-)
G401558 NA non-coding downstream 428627 6769532 ~ 6769734 (-)
G401531 NA non-coding downstream 449129 6748993 ~ 6749232 (-)
G401526 NA non-coding downstream 456087 6742057 ~ 6742274 (-)
G401491 NA non-coding downstream 603421 6594708 ~ 6594940 (-)
G401690 NA non-coding upstream 43260 7248324 ~ 7248560 (-)
G401691 NA non-coding upstream 43884 7248948 ~ 7250340 (-)
G401742 NA non-coding upstream 228723 7433787 ~ 7436406 (-)
G401758 NA non-coding upstream 362469 7567533 ~ 7567747 (-)
G401815 NA non-coding upstream 502798 7707862 ~ 7708191 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other downstream 823861 6371617 ~ 6374500 (-)
G401205 nelfe other downstream 1023101 6172988 ~ 6175260 (-)
G400815 NA other downstream 1608614 5587398 ~ 5589747 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 2057981 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 2189897 4961102 ~ 5008464 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 49369 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 664339 7869403 ~ 7917693 (-)
G402673 NA other upstream 1938806 9143870 ~ 9161470 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other upstream 2022331 9227395 ~ 9284493 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other upstream 2181931 9386995 ~ 9416253 (-)

Expression


Co-expression Network