zfpm2b (LOC108272465)


Basic Information

Item Value
gene id zfpm2b
gene name LOC108272465
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4418578 ~ 4456600 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942398.2
CAGAGCTCAGAGAAACGGCGCTGGGATTCAAACCGCACACTGAAGGAAGCTGCTTTTTTGTATTTGACGCTTTGTTTTGAAAGGGAAGTGAGATTATCTGGATTGAGCAGTCATGTCCAGGAGGAAACAGAGTAACCCACGGCAGTTCAGACGCCCAGCTATCACAGGAGCGTTTGAGAATGGACAAACGGAgtcagaggacagagagagcgaAGAGAAAGAGATCTTGAAAGATGTAGAAACGACTGTAGACCAAGAAGCACAGGTCCCTTTAGACTCTGAAAACTTTCACATTAAAAATGAGGACGATTCCAGTGCAGGGGATGTGGGTGGAAGTCTGGAAACACAGAAGGAAGTCAGTGAAGGACATAATGGGAAAAACCCAAGCAGCCCGACTGCGTCAGAGGAGTGGGACGGCCCGAGAGAGCTGGAGATGGTCAGCATCGGAGCCGAGAAAGGCGTTCGTTCCCGTCAGGCGCTTCCTCCAGGCACCACATGGGGACCATTCGCTGGGAAAATAGAAAGATCCACAGGAGGAAATGACATCGTACCGTTGGTTCTGACTGGAGGTCCACGATGGCTGATGAATGTGACGTGGGTCAGCGCAGAGGACTCAAAGAATAACTGTGTGGTTTACAGTAAAGGAGGACATGTGTGGTGCTCGACCACGAGAAGTGTTATTGAGGGAGAAGAActcgcagtgtgtgtggtggatgtTTCCTCAAGACTATCGTCCATCCAGCTCCTTCCTCAACAAGCCGCCATGGCGTCCATTCTCCCCAACGCTATCATCAACAAAGACATTTTCCCCTGTAAGACGTGTGGGATCTGGTTCAGGAGTGAGAGGAACCTCCAAGCTCACCTCATGTACTACTGCGGAGGACGGCCGAGGGAAAGTGAGCTGGCTTCAGAGAAACAGACCAACACGAACCCTCAGATATCCCGTACCTGCActtacccacaatgcaacaTGAGCTTCCTGGGTCTACAGGCTCTAAAAATGCACCTGTCTACACATTCTGCTTTCAAGACTGAGGAGACATCTCCTGGAAGCAGTTTGAAATGCACGATTTGTGACTACACGGCTGACACCCTGATGGTCCTGCAGCCCCACATCCTCACTCACCTGTCTCAAACAGGACTCCGGTGCACTCAGTGCCACTTCACCTTCCAAACACCTCAAGATCTATCAAAACACCAGGAGCTGCACAGACACGGTGGTCTGGATGACACATCTATTAAAGAGAATCAAACTGAGCACTCAGAGTCCATTGGTGTCGCAAGTCCGAAGGATAATAAAAGCATCATAGAAAGTCCAGTTCATCAAAACACGGAGCAAGAGAACAGTGAACAAGTGCAGGGAGCTACCAAGGCTGAAGTAGGGTCTGGAATCAAAGCTGGTGTTTCGTACAGTAGAATAAAATCAGAGCCCTCCAGCCCTCGTTTGGCTTCTTCTCCAATTCAGAATCACATGACCCCAGCGTTTCCCATGCCACCCTTCCTGCCCCATGTGCCATTCTCACAGGATATACCCGCAGTCCCACAGGCTTCTGAAATACTGGCTAAAATGTCAGAGCTGGTCCATCGCAGGCTACGTCACGGAGGCACCAACTTCCCCCCAGTGATGTATGGCGCACTGGTTCCAAAAGGAGCAACGTGCTTCGAATGCAACATTTCATTTAGCAACCTTGATAATTATTTAGTGCACAAGAAGCATTACTGTAACGGTCGCTGGCAGCACATGAGCAAATCTCATGATTACAGCATTTTGGACAAAGCCTCAGTGAGTCCTAAAACCGGGGGTGGTTTAGCTAGCATGCTGAATGCTGGCCACTCGTTTGAGGTTAAAGGTCATAATCCCACTCAGTTCAACACTTCTCTAGTTGAGCCTTTCAGTGCAGGAGGAAAAGCACCTGAGGAATTTCCAGTGAACGGTAAAAAAGCGCCGACTCCATGCGATGCGGAGGAAAGTCCGAACGGTATCATGTTAGACTCGAAGAGTCCAAAAATGTCAGAGAGTGAGCTGGACCACAATCAAACAACGTGTGACGCTTGTAAGATCACGTTCAGTCGACATGAGAACTACGTGGTGCACAAGCAATACTATTGCGCCTCCCGTCATGATCCGCCCGCAAAACGAGCAGCGAACAACAAACACGTTCAGAAATCCTTTCGTACCCGAAAGAGAAGAAAGATGCCAAGTCCTGATCCAGTGGTGTCTCAATCCTATCCTATCAGTAGTTCCTATATGTCCCAGGATACAGTAGAGAGTCTCAAGGACCAGCTTCATCACCGGTACAACATGATCCAGGGTTTGGTTCCAAAGCATCCTGAACCTTCCTTGACAGTAACAAAATCAGCTCTAGTTTCAAAGTGCAATGCAATAGCTCAAGAGGAAGGTGATGCACCAATAGATCTGAGTAAAAAATGCACAGTGCAGTTGGGTAAAGTTTCAGGACTTATGGACTATCACGAATGCGCAGTGTGTAAAATTAGCTTCAACAAAGTGGAAGACTACCTGAGCCACAAGCAGAACTTCTGCCCAGGTGCAGTCTTGGAGAACAAAGCGCCaaacagaaaggaagaaggTTCCAGAAATGCAAATGCCTCTGATAGTTTCAGTATTGAGCATTCGGTTCAAAGTGTCAATACTTCTGCATCTGCTGAAAAGCAACCGTCCATAAAGGATGAACACAGCATGATGAATTCTGATAACTATCCAGGTGGTGCTAAGAAAATCAGAGCAGATGAACAGATCTGGCCGTACTATGAGATTAAACCTGCTGACTACGCCACAGGGATTTTCGTTCCACAAAATGAGAGGAGGCAAAGCCCAAACGAGGGCACTGAAGGTGAAAAAGAGCAACCCATGCCAGACGGCAGTCATGTTGGCTCTGAAAATATGGAGAACCCGAAAATAAAGTCTTTAAACTCCAGCCTCCAGGGCGACGACAAGCAAGGACACGAATCTTGCAGCACTTCAACCCCAAACATCCACTTCACGGCTTGTACCCCGGATCAAGAGGGTGCCATAAAACCTAAAGAGAGCATCTCTTCTTCACCAGCCTCCAAAATGGAGGAGATCTCGAGCTTGAAAAGGAGTACAAACGGATCGATCTCGGCAGCGGTTAACGGCAAATACTGTCGTCCCTGCGACATCCAGTTCAACAACCTGTCAAACTTTATAACACACAAAAAGTTTTATTGCTCAGCACACACTACTGAGCATGTGAAATGAGACCTTGATACTGCGTCTCAACCGTTTATACGACAGCAAAAGGACAATCAAATCAGGAGATTTTATCTTCCAGTGGTTTAATAGTGAATATATTTGTTGTGTGTGGTATTTTTGCCTCTTTGtgacgtatttatttatttatttaaaaaaaaaaaaatcaagcgcTGAACTAAACCcggctttacactgtacaatttttggccaattttgctgtcggttttacatcataaaaaaattctgtgGTTGTAAGTTGAGATCAGCGGCCTTCTAACGCATAGTGTGACATGGTCAGATCTCAGACTTactttgaaaaatgtttgtgtttatgtgtttgtgtttataatcTTACACTGCGAACACACAgcctgttatagaattcagcaaAGATTTTATAGtgatcatctcatacagtgtgacaagtaataatctcaAAATATGGCTGATTATGTGCAGTGCAAAACCAGTTTTATACAGTTGAGataagaaaaattaataaacaataattttgACAATAGCACAAAACTCGCACCAGGGCTGCTCATTTAGCCTGTTTGggaattttattaaaaagcagacatttaagtgttaaagatgttttttgCAACAAATAATGGcataattattaacattcaATAGATTCTAGTTTGTCTTTGatgtttttacaattatttacacTTCAGTATGTTAATTCCTTTTGGATTATATTTTGCTTATgcggaaaaaaaaagtacttatACGTGTTTGCTAGttctctgttttctgtctctttttgaaACTTGGATCCTAATGCAATACTTTTTAGAAAATGGATCATTAGCAGTATTATAAATcaaggactgttttttttttttttttttttttgttactccGACCCCAGGAATTGTCTGTTGAAATGTTTCCTCGTCTTGCTGAAGATGATGGAAAGAGGATTTACACTTGAAACTTTGGACTgaatttcatcttttcatcttgacaataggaaaataatgtcgtcaaaaaaaagtgttactATGCATGTACCTGTAACGGAATGAAATTCCAGATGTTTGATCTTCTGATTTTATGTGGCATCTCGATTAAATTTCTAATCTCAGGACTGGG
>XM_026942399.2
CAGAGCTCAGAGAAACGGCGCTGGGATTCAAACCGCACACTGAAGGAAGCTGCTTTTTTGTATTTGACGCTTTGTTTTGAAAGGGAAGTGAGATTATCTGGATTGAGCAGTCATGTCCAGGAGGAAACAGAGTAACCCACGGCAGTTCAGACGCCCAGCTATCACAGGAGCGTTTGAGAATGGACAAACGGAgtcagaggacagagagagcgaAGAGAAAGAGATCTTGAAAGATGTAGAAACGACTGTAGACCAAGAAGCACAGGTCCCTTTAGACTCTGAAAACTTTCACATTAAAAATGAGGACGATTCCAGTGCAGGGGATGTGGGTGGAAGTCTGGAAACACAGAAGGAAGTCAGTGAAGGACATAATGGGAAAAACCCAAGCAGCCCGACTGCGTCAGAGGAGTGGGACGGCCCGAGAGAGCTGGAGATGGTCAGCATCGGAGCCGAGAAAGGCGTTCGTTCCCGTCAGGCGCTTCCTCCAGGCACCACATGGGGACCATTCGCTGGGAAAATAGAAAGATCCACAGGAGGAAATGACATCGTACCGTTGGTTCTGACTGGAGGTCCACGATGGCTGATGAATGTGACGTGGGTCAGCGCAGAGGACTCAAAGAATAACTGTGTGGTTTACAGTAAAGGAGGACATGTGTGGTGCTCGACCACGAGAAGTGTTATTGAGGGAGAAGAActcgcagtgtgtgtggtggatgtTTCCTCAAGACTATCGTCCATCCAGCTCCTTCCTCAACAAGCCGCCATGGCGTCCATTCTCCCCAACGCTATCATCAACAACATTTTCCCCTGTAAGACGTGTGGGATCTGGTTCAGGAGTGAGAGGAACCTCCAAGCTCACCTCATGTACTACTGCGGAGGACGGCCGAGGGAAAGTGAGCTGGCTTCAGAGAAACAGACCAACACGAACCCTCAGATATCCCGTACCTGCActtacccacaatgcaacaTGAGCTTCCTGGGTCTACAGGCTCTAAAAATGCACCTGTCTACACATTCTGCTTTCAAGACTGAGGAGACATCTCCTGGAAGCAGTTTGAAATGCACGATTTGTGACTACACGGCTGACACCCTGATGGTCCTGCAGCCCCACATCCTCACTCACCTGTCTCAAACAGGACTCCGGTGCACTCAGTGCCACTTCACCTTCCAAACACCTCAAGATCTATCAAAACACCAGGAGCTGCACAGACACGGTGGTCTGGATGACACATCTATTAAAGAGAATCAAACTGAGCACTCAGAGTCCATTGGTGTCGCAAGTCCGAAGGATAATAAAAGCATCATAGAAAGTCCAGTTCATCAAAACACGGAGCAAGAGAACAGTGAACAAGTGCAGGGAGCTACCAAGGCTGAAGTAGGGTCTGGAATCAAAGCTGGTGTTTCGTACAGTAGAATAAAATCAGAGCCCTCCAGCCCTCGTTTGGCTTCTTCTCCAATTCAGAATCACATGACCCCAGCGTTTCCCATGCCACCCTTCCTGCCCCATGTGCCATTCTCACAGGATATACCCGCAGTCCCACAGGCTTCTGAAATACTGGCTAAAATGTCAGAGCTGGTCCATCGCAGGCTACGTCACGGAGGCACCAACTTCCCCCCAGTGATGTATGGCGCACTGGTTCCAAAAGGAGCAACGTGCTTCGAATGCAACATTTCATTTAGCAACCTTGATAATTATTTAGTGCACAAGAAGCATTACTGTAACGGTCGCTGGCAGCACATGAGCAAATCTCATGATTACAGCATTTTGGACAAAGCCTCAGTGAGTCCTAAAACCGGGGGTGGTTTAGCTAGCATGCTGAATGCTGGCCACTCGTTTGAGGTTAAAGGTCATAATCCCACTCAGTTCAACACTTCTCTAGTTGAGCCTTTCAGTGCAGGAGGAAAAGCACCTGAGGAATTTCCAGTGAACGGTAAAAAAGCGCCGACTCCATGCGATGCGGAGGAAAGTCCGAACGGTATCATGTTAGACTCGAAGAGTCCAAAAATGTCAGAGAGTGAGCTGGACCACAATCAAACAACGTGTGACGCTTGTAAGATCACGTTCAGTCGACATGAGAACTACGTGGTGCACAAGCAATACTATTGCGCCTCCCGTCATGATCCGCCCGCAAAACGAGCAGCGAACAACAAACACGTTCAGAAATCCTTTCGTACCCGAAAGAGAAGAAAGATGCCAAGTCCTGATCCAGTGGTGTCTCAATCCTATCCTATCAGTAGTTCCTATATGTCCCAGGATACAGTAGAGAGTCTCAAGGACCAGCTTCATCACCGGTACAACATGATCCAGGGTTTGGTTCCAAAGCATCCTGAACCTTCCTTGACAGTAACAAAATCAGCTCTAGTTTCAAAGTGCAATGCAATAGCTCAAGAGGAAGGTGATGCACCAATAGATCTGAGTAAAAAATGCACAGTGCAGTTGGGTAAAGTTTCAGGACTTATGGACTATCACGAATGCGCAGTGTGTAAAATTAGCTTCAACAAAGTGGAAGACTACCTGAGCCACAAGCAGAACTTCTGCCCAGGTGCAGTCTTGGAGAACAAAGCGCCaaacagaaaggaagaaggTTCCAGAAATGCAAATGCCTCTGATAGTTTCAGTATTGAGCATTCGGTTCAAAGTGTCAATACTTCTGCATCTGCTGAAAAGCAACCGTCCATAAAGGATGAACACAGCATGATGAATTCTGATAACTATCCAGGTGGTGCTAAGAAAATCAGAGCAGATGAACAGATCTGGCCGTACTATGAGATTAAACCTGCTGACTACGCCACAGGGATTTTCGTTCCACAAAATGAGAGGAGGCAAAGCCCAAACGAGGGCACTGAAGGTGAAAAAGAGCAACCCATGCCAGACGGCAGTCATGTTGGCTCTGAAAATATGGAGAACCCGAAAATAAAGTCTTTAAACTCCAGCCTCCAGGGCGACGACAAGCAAGGACACGAATCTTGCAGCACTTCAACCCCAAACATCCACTTCACGGCTTGTACCCCGGATCAAGAGGGTGCCATAAAACCTAAAGAGAGCATCTCTTCTTCACCAGCCTCCAAAATGGAGGAGATCTCGAGCTTGAAAAGGAGTACAAACGGATCGATCTCGGCAGCGGTTAACGGCAAATACTGTCGTCCCTGCGACATCCAGTTCAACAACCTGTCAAACTTTATAACACACAAAAAGTTTTATTGCTCAGCACACACTACTGAGCATGTGAAATGAGACCTTGATACTGCGTCTCAACCGTTTATACGACAGCAAAAGGACAATCAAATCAGGAGATTTTATCTTCCAGTGGTTTAATAGTGAATATATTTGTTGTGTGTGGTATTTTTGCCTCTTTGtgacgtatttatttatttatttaaaaaaaaaaaaatcaagcgcTGAACTAAACCcggctttacactgtacaatttttggccaattttgctgtcggttttacatcataaaaaaattctgtgGTTGTAAGTTGAGATCAGCGGCCTTCTAACGCATAGTGTGACATGGTCAGATCTCAGACTTactttgaaaaatgtttgtgtttatgtgtttgtgtttataatcTTACACTGCGAACACACAgcctgttatagaattcagcaaAGATTTTATAGtgatcatctcatacagtgtgacaagtaataatctcaAAATATGGCTGATTATGTGCAGTGCAAAACCAGTTTTATACAGTTGAGataagaaaaattaataaacaataattttgACAATAGCACAAAACTCGCACCAGGGCTGCTCATTTAGCCTGTTTGggaattttattaaaaagcagacatttaagtgttaaagatgttttttgCAACAAATAATGGcataattattaacattcaATAGATTCTAGTTTGTCTTTGatgtttttacaattatttacacTTCAGTATGTTAATTCCTTTTGGATTATATTTTGCTTATgcggaaaaaaaaagtacttatACGTGTTTGCTAGttctctgttttctgtctctttttgaaACTTGGATCCTAATGCAATACTTTTTAGAAAATGGATCATTAGCAGTATTATAAATcaaggactgttttttttttttttttttttttgttactccGACCCCAGGAATTGTCTGTTGAAATGTTTCCTCGTCTTGCTGAAGATGATGGAAAGAGGATTTACACTTGAAACTTTGGACTgaatttcatcttttcatcttgacaataggaaaataatgtcgtcaaaaaaaagtgttactATGCATGTACCTGTAACGGAATGAAATTCCAGATGTTTGATCTTCTGATTTTATGTGGCATCTCGATTAAATTTCTAATCTCAGGACTGGG

Function

NR:

description
PREDICTED: zinc finger protein ZFPM2-like isoform X1

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942398.2 True 4339 mRNA 0.44 8 4418578 4456600
XM_026942399.2 False 4336 mRNA 0.44 8 4418578 4456600

Neighbor

gene id symbol gene type direction distance location
LOC113543884 NA coding downstream 1741 4411699 ~ 4416837 (-)
myl4 myl4,LOC107694961,LOC107754315,LOC107585102,LOC107740645,LOC107662407 coding downstream 73364 4339535 ~ 4345214 (-)
LOC113534587 NA coding downstream 230854 4179111 ~ 4187724 (-)
LOC117596407 NA coding downstream 243424 4170470 ~ 4175154 (-)
LOC117596393 LOC108272830 coding downstream 250018 4166324 ~ 4168560 (-)
gh1 NA coding upstream 32148 4488748 ~ 4491287 (-)
LOC113543882 NA coding upstream 41293 4497893 ~ 4500858 (-)
thbs3b LOC108272910 coding upstream 50881 4507481 ~ 4525407 (-)
mtx1b mtx1b,mtx1,LOC108272909,LOC103026555,LOC108410892 coding upstream 78396 4534996 ~ 4553366 (-)
si:dkeyp-92c9.4 NA coding upstream 211187 4667787 ~ 4691369 (-)
G400112 LOC108272813 non-coding downstream 125421 4234403 ~ 4293157 (-)
G400133 NA non-coding downstream 134185 4284049 ~ 4284393 (-)
G400131 NA non-coding downstream 137145 4280777 ~ 4281433 (-)
G400085 NA non-coding downstream 142096 4190741 ~ 4276482 (-)
G399990 NA non-coding downstream 312251 4100097 ~ 4106327 (-)
G400428 NA non-coding upstream 77241 4533841 ~ 4534131 (-)
G400431 txnip,LOC107702541,LOC107731569,LOC108273074,LOC105012721,LOC105901470 non-coding upstream 101888 4558488 ~ 4562020 (-)
G400432 NA non-coding upstream 105611 4562211 ~ 4563364 (-)
G400477 NA non-coding upstream 323011 4779611 ~ 4785657 (-)
LOC113543895 NA non-coding upstream 356061 4812661 ~ 4817295 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 80151 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 258828 4150899 ~ 4159750 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 285656 4120397 ~ 4132922 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 1184254 3224065 ~ 3234324 (-)
LOC113525117 NA other downstream 1222015 3147299 ~ 3196563 (-)
polr3gla LOC108272317,LOC108415116 other upstream 141200 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 504502 4961102 ~ 5008464 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 671635 5128235 ~ 5140380 (-)
G400815 NA other upstream 1130798 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 1716388 6172988 ~ 6175260 (-)

Expression


Co-expression Network