LOC113543882


Basic Information

Item Value
gene id LOC113543882
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4497893 ~ 4500858 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942411.2
GCTGAGGCCTCACATTTTTCATCTCGAGATGTTTGAGATAAGAGAGACTGAACGCTTCAGCATGGCGGCTCGACTGCTGCTCCTCTGCTGTGTGTGCACTCTGAGAAcatCTCTCTCGTCTTTGGTGTTTCAGTCCCCTGAGTTCATTAGTGCATCCATCGGTGACtcttttacattaaaatgcactCATGACCTGCCGATTGCATATTGTCACAGCTCTACATCCTGGTATAAAGTGAACCCTAGAACTGGAAAACTGGGCAAAGTCAGAAAAGGCGAGGACAAGCTGGAAGATGATAAACAAACGTGTACCAGGACAATCGTTAATGCTCAAGTTCAAGACTCAGGCATTTACTACTGCACATCTTTAcatgataaatttttttttattggaactGGCACAAGAGTCGTCATTACAGataCTCGTCTGTTAAAGCCTTCTATCGTTCTGTACACACCGATGGAGGTGGACACTCCCTCTGTTCTCCTGCAGTGTGTGGTGATGGATGTCGTTCCCTCTCAGATCAGAGTTTTGTGGTTAATTGATGGAGACGAGCGCACAGGATGGACAGAATCAGGCTGGACAGGACACGACGATTCAGCCTCAGAATTCACTCGAGCTCAAATCACGATTCCTGCAGACGAATGGAAGGAAGCGGCTCACATCATCGAGTGTGTCGTGATGTATGAAAACCAGACCATGTCCCAAACTCTGCAACGCCAAAGTCATTCAGACTCTACGTGTACGTGGCTGCTGTATGGAGGCTGCGGTGTCGTTGTCTTCACCATCGCAGTGATGCTCACCACGGTTCTGTGTTTACGTAAAGagaaacaaaacacacacgggATGATTGCAGAGAAACCTTCTACCAGAACGGAAGTTGAATATTCCTGTTGGAACCCCGACAGCGTTAATCAGCTACTAGACGATTAGCAATAGTTAGCTAAAACAATAAAGCAGGAAGTAAGAAGCTGTAATAAGTCTGTAACCTGattattaaaagctttttttggTTATTAATATCAGAGTAGGACTGCAACACctaaataataatctttaataatttgtgtaaattgtgtaaaagtgtgtaaattaATGAT
>XM_034301720.1
GCTGAGGCCTCACATTTTTCATCTCGAGATGTTTGAGATAAGAGAGACTGAACGCTTCAGCATGGCGGCTCGACTGCTGCTCCTCTGCTGTGTGTGCACTCTGAGAAcatCTCTCTCGTCTTTGGTGTTTCAGTCCCCTGAGTTCATTAGTGCATCCATCGGTGACtcttttacattaaaatgcactCATGACCTGCCGATTGCATATTGTCACAGCTCTACATCCTGGTATAAAGTGAACCCTAGAACTGGAAAACTGGGCAAAGTCAGAAAAGGCGAGGACAAGCTGGAAGATGATAAACAAACGTGTACCAGGACAATCGTTAATGCTCAAGTTCAAGACTCAGGCATTTACTACTGCACATCTTTAcatgataaatttttttttattggaactGGCACAAGAGTCGTCATTACAGataCTCGTCTGTTAAAGCCTTCTATCGTTCTGTACACACCGATGGAGGTGGACACTCCCTCTGTTCTCCTGCAGTGTGTGGTGATGGATGTCGTTCCCTCTCAGATCAGAGTTTTGTGGTTAATTGATGGAGACGAGCGCACAGGATGGACAGAATCAGGCTGGACAGGACACGACGATTCAGCCTCAGAATTCACTCGAGCTCAAATCACGATTCCTGCAGACGAATGGAAGGAAGCGGCTCACATCATCGAGTGTGTCGTGATGTATGAAAACCAGACCATGTCCCAAACTCTGCAACGCCAAACAGGTCATTCAGACTCTACGTGTACGTGGCTGCTGTATGGAGGCTGCGGTGTCGTTGTCTTCACCATCGCAGTGATGCTCACCACGGTTCTGTGTTTACGTAAAGagaaacaaaacacacacgggATGATTGCAGAGAAACCTTCTACCAGAACGGAAGTTGAATATTCCTGTTGGAACCCCGACAGCGTTAATCAGCTACTAGACGATTAGCAATAGTTAGCTAAAACAATAAAGCAGGAAGTAAGAAGCTGTAATAAGTCTGTAACCTGattattaaaagctttttttggTTATTAATATCAGAGTAGGACTGCAACACctaaataataatctttaataatttgtgtaaattgtgtaaaagtgtgtaaattaATGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942411.2 False 1101 mRNA 0.44 6 4497893 4500858
XM_034301720.1 True 1104 mRNA 0.44 6 4497893 4500858

Neighbor

gene id symbol gene type direction distance location
gh1 NA coding downstream 6606 4488748 ~ 4491287 (-)
zfpm2b LOC108272465 coding downstream 41293 4418578 ~ 4456600 (-)
LOC113543884 NA coding downstream 81056 4411699 ~ 4416837 (-)
myl4 myl4,LOC107694961,LOC107754315,LOC107585102,LOC107740645,LOC107662407 coding downstream 152679 4339535 ~ 4345214 (-)
LOC113534587 NA coding downstream 310169 4179111 ~ 4187724 (-)
thbs3b LOC108272910 coding upstream 6623 4507481 ~ 4525407 (-)
mtx1b mtx1b,mtx1,LOC108272909,LOC103026555,LOC108410892 coding upstream 34138 4534996 ~ 4553366 (-)
si:dkeyp-92c9.4 NA coding upstream 166929 4667787 ~ 4691369 (-)
si:dkey-81h8.1 LOC108272626,LOC103028165,LOC107702549,LOC107672832,LOC107710627,LOC108442974 coding upstream 193608 4694466 ~ 4706433 (-)
sema4ab LOC108272624 coding upstream 208880 4709738 ~ 4747838 (-)
G400112 LOC108272813 non-coding downstream 204736 4234403 ~ 4293157 (-)
G400133 NA non-coding downstream 213500 4284049 ~ 4284393 (-)
G400131 NA non-coding downstream 216460 4280777 ~ 4281433 (-)
G400085 NA non-coding downstream 221411 4190741 ~ 4276482 (-)
G399990 NA non-coding downstream 391566 4100097 ~ 4106327 (-)
G400428 NA non-coding upstream 32983 4533841 ~ 4534131 (-)
G400431 txnip,LOC107702541,LOC107731569,LOC108273074,LOC105012721,LOC105901470 non-coding upstream 57630 4558488 ~ 4562020 (-)
G400432 NA non-coding upstream 61353 4562211 ~ 4563364 (-)
G400477 NA non-coding upstream 278753 4779611 ~ 4785657 (-)
LOC113543895 NA non-coding upstream 311803 4812661 ~ 4817295 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 159466 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 338143 4150899 ~ 4159750 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 364971 4120397 ~ 4132922 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 1263569 3224065 ~ 3234324 (-)
LOC113525117 NA other downstream 1301330 3147299 ~ 3196563 (-)
polr3gla LOC108272317,LOC108415116 other upstream 96942 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 460244 4961102 ~ 5008464 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 627377 5128235 ~ 5140380 (-)
G400815 NA other upstream 1086540 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 1672130 6172988 ~ 6175260 (-)

Expression


Co-expression Network