LOC113543884


Basic Information

Item Value
gene id LOC113543884
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4411699 ~ 4416837 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942412.2
ATCAACAATCTCTATAGGAGAATATACTCACTTCACTATAACACAGGGTTACTGCAGAGAGCAGAATGGACACGAGTTTAGACATATATGAGGATTCATTGGAATGTCAATACGTAAATTGGAAGAAATCGAGCAATCCCAGGAAAATAAGCAACCAGGGTCCTCAACGCTCAgGAGATGATAATGCAAGGAGCAGACGTTCCAGATGTGTGTCCGCAGTGTGTGTAGCGctgctgtgtgttctcctgctgaGCGTCATTATAGTGTTGACGGTGAAACTCAACAGCGTGACAAGAGAAAGAGACCAGTTGCAGATCAGTTATGACAACATGACTGCAGAGAGAGATCAgctacacactgagagagatGGACTCCAGATGATGTTGAATAATTCCATACAGCAGTGTCAGAGGTATTTCATGACAACAGAGAAGAAGAGCTGGAATGATGCTAGACAGGACTGCAGGTCGAAAGGAGCCGACCTTGCGATCATCACCAGCCGAGAAGACCAGGAATTCCTCAGTAAAATTTTCAAGGGTACTGAGGCTTGGATTGGTTTGATTGACATTGCTGAAGAAGGGATGTGGAAGTGGGTGGACGGCACAACACTGACCAATGGGTTCTGGTGGGATGAGGAACCTAATGACTACAATAATGATGAGGACTGTGCTGTAACTGGCAGCAAATTTGCTAAAGCTGAGATCAGGACGTGGGCTGATTATCCCTGTAACATTCCTGTATTAGCGATTTGCCAGATGAGCTCAAATAACTAGAGCACAAATcagaatattcattttaaatacatcGATAAAGTCTGTATTTTGTTAAGCTGTTTGCTGCAAATCCAACATCACATTTGATGACtatgtaaaattaataaaaaattattccaCTGCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942412.2 True 898 mRNA 0.43 5 4411699 4416837

Neighbor

gene id symbol gene type direction distance location
myl4 myl4,LOC107694961,LOC107754315,LOC107585102,LOC107740645,LOC107662407 coding downstream 66485 4339535 ~ 4345214 (-)
LOC113534587 NA coding downstream 223975 4179111 ~ 4187724 (-)
LOC117596407 NA coding downstream 236545 4170470 ~ 4175154 (-)
LOC117596393 LOC108272830 coding downstream 243139 4166324 ~ 4168560 (-)
LOC113534634 LOC108272825 coding downstream 267155 4134338 ~ 4144544 (-)
zfpm2b LOC108272465 coding upstream 1741 4418578 ~ 4456600 (-)
gh1 NA coding upstream 71911 4488748 ~ 4491287 (-)
LOC113543882 NA coding upstream 81056 4497893 ~ 4500858 (-)
thbs3b LOC108272910 coding upstream 90644 4507481 ~ 4525407 (-)
mtx1b mtx1b,mtx1,LOC108272909,LOC103026555,LOC108410892 coding upstream 118159 4534996 ~ 4553366 (-)
G400112 LOC108272813 non-coding downstream 118542 4234403 ~ 4293157 (-)
G400133 NA non-coding downstream 127306 4284049 ~ 4284393 (-)
G400131 NA non-coding downstream 130266 4280777 ~ 4281433 (-)
G400085 NA non-coding downstream 135217 4190741 ~ 4276482 (-)
G399990 NA non-coding downstream 305372 4100097 ~ 4106327 (-)
G400428 NA non-coding upstream 117004 4533841 ~ 4534131 (-)
G400431 txnip,LOC107702541,LOC107731569,LOC108273074,LOC105012721,LOC105901470 non-coding upstream 141651 4558488 ~ 4562020 (-)
G400432 NA non-coding upstream 145374 4562211 ~ 4563364 (-)
G400477 NA non-coding upstream 362774 4779611 ~ 4785657 (-)
LOC113543895 NA non-coding upstream 395824 4812661 ~ 4817295 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 73272 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 251949 4150899 ~ 4159750 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 278777 4120397 ~ 4132922 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 1177375 3224065 ~ 3234324 (-)
LOC113525117 NA other downstream 1215136 3147299 ~ 3196563 (-)
polr3gla LOC108272317,LOC108415116 other upstream 180963 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 544265 4961102 ~ 5008464 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 711398 5128235 ~ 5140380 (-)
G400815 NA other upstream 1170561 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 1756151 6172988 ~ 6175260 (-)

Expression


Co-expression Network