LOC113543887 (LOC108262220)


Basic Information

Item Value
gene id LOC113543887
gene name LOC108262220
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5215000 ~ 5221257 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942416.2
CTCAAGTGTGAAGCACTAGCGAGGTCTGGAAATGCAAGCCGTCTATGAGGATATCAGTTTTGACCTCTGCAAAATGGATAGTAGTGAAAACTATCATTCTCCAACAGAGACAGAGGGTGATGTTTATGTGAATATACAGGACTGCCACCCAAAATCCAAAAAATGCACAGATATCTCTGAGCGCACTGAGTTGAAAGACAACAAGAAAACAGGAAAGATCTTCATATGTGCTGTTGGTCTCCTCCTAATGCTTGGTGGCGCTTTATCAGCACTCTGTGCTGTAGGGATCTTGTATCACAATAAAGTTGTCTCCTTTGAGATAATACATGAGCAGTATGAGAATGCTACAGTCACACTTATGATGCAAGAAGATAAAGTCAAGGATGTGAAGCATCAGGAGCTCGTCTCTGCATGCAATGaaaaagagagactttATGAAGTGCTGAAGATGAAGTATAAGCAAGCTCATGACCGTCTCTCTGCATGCAATGCAAATCAAAACTGTAAACTTTGCGAGGAAGGATGGAAGTCTCTTGGTTTAAAGTGTTACTACTTCTTAACTAACAAACTGACCTGGACACAGAGTAGAGATTACTGTGTGGAGAAAGGAGGCCACCTGGTGATTATAACCAGCCAAACTGAACAGGATTTTGTATCTTCacaaattaaagaaacacaCTGGATTGGCCTGAATGACTTGGAGACTGAGGGAAAGTGGAGGTGGGTGAACAACCAGCCCTTAAATGAGACGGGTGTAACGTTCTGGTATCGATCTCCAGCGGGAATAGATGAGCCTGATAACTGGAAAAAAGAGGACCCTTCTGGAGAGAACTGTGCCTCTCTGGGGCATGAGATTGGTGAAACACATAAATGGTTTGACGCTTCTTGCCGTAAGCTAAAACAATTCATCTGTGAAAAGTAAAATACTGCACTTGCATTTTTAGCTAAAAATACTTATGATTTTGAGAAAAGTGGATAATGTTTGGTTATTGAGTCCGAAtatttgatattaataataCAGCCAACTggattttttctatttaaaatgtatacagCCAGCTTTAAATCAtaatcaatgatttttttatgtttttcaacatttaaaaGCTCTTGGATTTCAGACCTCTTGGCTTAAATggacagatgtttttttttttttatgtgattatCTAAGCTTGTGTAAACCTCTAgaccattagaagatggtatGAGATCATATATGTAGTTTTTCTCCTGCTGCTTTGTAGAAACTTCAACATTTGACAATATCTATTAGGAATAGTTTGACTATCATGAATCTCCAGTGTTTATTTCCTTGAAGACATGTTAAACACAAAGTGACTGAACAGTTATAACTTTGAGGATGTTTAATGATACAAGGATCCACATCAGTTCTGCTGAGTAGTGTGAAAGTCAGAGGTAGTTATATCTATACACATGACCAAGTCCAGTCGCCTTGACTTACTACTATtggacattttaaaattatcttGATGCTTGAAAAATCTTCATGAGATCTTAATTTCTTATAttctatttttgtattaaatcaatataaagcgggtgacaaattaaaggaaaacctgATTCGACAGAAGAGCTTCAGTGAACCTCGCCATAAATTCTACAAGTCTTCTAAACTCTATTGAATGGATGAACAttgttcttccaaaagatattctttcagttcattttttaataacccCCCAATGCTAAGTACTAATGCTATGTATATTCACTGAGTAGTTG
>XM_034301733.1
CTCAAGTGTGAAGCACTAGCGAGGTCTGGAAATGCAAGCCGTCTATGAGGATATCAGTTTTGACCTCTGCAAAATGGATAGTAGTGAAAACTATCATTCTCCAACAGAGACAGAGGGTGATGTTTATGTGAATATACAGGACTGCCACCCAAAATCCAAAAAATGCACAGATATCTCTGAGCGCACTGAGTTGAAAGACAACAAGAAAACAGGAAAGATCTTCATATGTGCTGTTGGTCTCCTCCTAATGCTTGGTGGCGCTTTATCAGCACTCTGTGCTGTAGGGATCTTGTATCACAATAAAGTTGTCTCCTTTGAGATAATACATGAGCAGTATGAGAATGCTACAGTCACACTTATGATGCAAGAAGATAAAGTCAAGGATGTGAAGCATCAGGAGCTCGTCTCTGCATGCAATGaaaaagagagactttATGAAGTGCTGAAGATGAAGTATAAGCAAGCTCATGACCGTCTCTCTGCATGCAATGCAAATCAAAACTGTAAACTTTGCGAGGAAGGATGGAAGTCTCTTGGTTTAAAGTGTTACTACTTCTTAACTAACAAACTGACCTGGACACAGAGTAGAGATTACTGTGTGGAGAAAGGAGGCCACCTGGTGATTATAACCAGCCAAACTGAACAGGATTTTGTATCTTCacaaattaaagaaacacaCTGGATTGGCCTGAATGACTTGGAGACTGAGGGAAAGTGGAGGTTCTGGTATCGATCTCCAGCGGGAATAGATGAGCCTGATAACTGGAAAAAAGAGGACCCTTCTGGAGAGAACTGTGCCTCTCTGGGGCATGAGATTGGTGAAACACATAAATGGTTTGACGCTTCTTGCCGTAAGCTAAAACAATTCATCTGTGAAAAGTAAAATACTGCACTTGCATTTTTAGCTAAAAATACTTATGATTTTGAGAAAAGTGGATAATGTTTGGTTATTGAGTCCGAAtatttgatattaataataCAGCCAACTggattttttctatttaaaatgtatacagCCAGCTTTAAATCAtaatcaatgatttttttatgtttttcaacatttaaaaGCTCTTGGATTTCAGACCTCTTGGCTTAAATggacagatgtttttttttttttatgtgattatCTAAGCTTGTGTAAACCTCTAgaccattagaagatggtatGAGATCATATATGTAGTTTTTCTCCTGCTGCTTTGTAGAAACTTCAACATTTGACAATATCTATTAGGAATAGTTTGACTATCATGAATCTCCAGTGTTTATTTCCTTGAAGACATGTTAAACACAAAGTGACTGAACAGTTATAACTTTGAGGATGTTTAATGATACAAGGATCCACATCAGTTCTGCTGAGTAGTGTGAAAGTCAGAGGTAGTTATATCTATACACATGACCAAGTCCAGTCGCCTTGACTTACTACTATtggacattttaaaattatcttGATGCTTGAAAAATCTTCATGAGATCTTAATTTCTTATAttctatttttgtattaaatcaatataaagcgggtgacaaattaaaggaaaacctgATTCGACAGAAGAGCTTCAGTGAACCTCGCCATAAATTCTACAAGTCTTCTAAACTCTATTGAATGGATGAACAttgttcttccaaaagatattctttcagttcattttttaataacccCCCAATGCTAAGTACTAATGCTATGTATATTCACTGAGTAGTTG

Function

GO:

id name namespace
GO:0045954 positive regulation of natural killer cell mediated cytotoxicity biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942416.2 True 1749 mRNA 0.37 9 5215000 5221257
XM_034301733.1 False 1710 mRNA 0.37 9 5215000 5221257

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-92c9.2 LOC108272361,LOC107571465,LOC107598237,LOC108413164,LOC107731579,LOC107702702,LOC107738595 coding downstream 1682 5209153 ~ 5213318 (-)
LOC117596409 NA coding downstream 62392 5151088 ~ 5152608 (-)
LOC117596451 LOC108261350,LOC108261581 coding downstream 87563 5120270 ~ 5127437 (-)
si:ch211-195b13.1 si:ch211-195b13.1,LOC108273319,LOC103036792,LOC108411161,LOC105892152,LOC104955017 coding downstream 155417 5053765 ~ 5059583 (-)
eya3 eya3 coding downstream 162958 5040286 ~ 5052042 (-)
LOC113543693 LOC108273363,LOC108262220 coding upstream 8010 5229267 ~ 5232051 (-)
LOC113543750 NA coding upstream 29859 5251116 ~ 5257472 (-)
LOC117596412 LOC108262220 coding upstream 37298 5258555 ~ 5263273 (-)
LOC113543852 LOC108262220 coding upstream 47061 5268318 ~ 5276318 (-)
LOC113543899 NA coding upstream 60040 5281297 ~ 5285608 (-)
G400501 LOC108272940 non-coding downstream 179078 5030859 ~ 5035922 (-)
G400517 LOC108273316 non-coding downstream 202205 5012187 ~ 5012795 (-)
G400500 NA non-coding downstream 296117 4911350 ~ 4918883 (-)
G400503 NA non-coding downstream 330997 4881706 ~ 4884003 (-)
G400494 NA non-coding downstream 381017 4833754 ~ 4833983 (-)
LOC113543905 NA non-coding upstream 18842 5240099 ~ 5242052 (-)
G400622 NA non-coding upstream 57646 5278903 ~ 5279314 (-)
G400676 NA non-coding upstream 149815 5371072 ~ 5380937 (-)
G400826 NA non-coding upstream 362298 5583555 ~ 5587381 (-)
G400913 NA non-coding upstream 590087 5811344 ~ 5812012 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 74620 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 206536 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 579943 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 876573 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 1055250 4150899 ~ 4159750 (-)
G400815 NA other upstream 366141 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 951731 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 1150360 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 2033176 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 2648146 7869403 ~ 7917693 (-)

Expression


Co-expression Network