pard6gb (LOC108272576)


Basic Information

Item Value
gene id pard6gb
gene name LOC108272576
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5559980 ~ 5598363 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942423.2
GATGTCATTCTGAaaagttttctctctctctctctctctctctctctctctaggcaGAGGCGGTGATTTTACCCTCCTTCCacatctatttttttccccctgaagtTTGTTGAGCCTCTTGGAGAGTCGTGATCGGAATAGCCTAGGATTACTCTTTCCTTTCCAGGATCTagccactacacacacacacacacacacacacacacacacacacacagagagagtgagaagcGGACCGCAGTGAGACCATCGAGGCGTCAAAAATGAATCGGAGTTTTAATAATAAGGCGCAGAGTTTGCGTCACTCGGACCTGGACGCGGTGGAAGTCAAAAGCAAATATGGTGCAGAGTTTCGCAGGTTTTCAGTGAACCGAGCGAAGCCTGGCAAATTCGAGGAGTTCTTTAAGCTGATCATGAACCTCCACCGCATCGCCAACATGGAGGTGATGATCGGCTACGCTGACGTTCATGGAGACCTGCTGCCCATCAACAACGATGACAACTTCTGCAAGGCCGTGTCCACAGCGCACCCCCTGCTCCGGATCTTTATCCAAAGACAAGAGGAAATTGACTACAGCACCTTCGGCACCAACACACTAACCCGAAAGAAGAAGGCTGGGGTCGCCCTGCGCAACGACCTGAACAGGAAGCGGCCGCACATCCGCATCGGCCTTCCTCAGGATTTCCGTCCTGTGTCGTCTATCATCGACGTGGACATCGTGCCCGAGTCGCACCGGCGTGTGAGGCTGTACCGTTACGGCTCGCACAAACCGCTCGGGTTCTACATCCGAGACGGCACCAGCGTACGCGTCACAGCACACGGTCTCGAGAAGGTGCCAGGTATCTTCATCTCGCGCCTGGTCCCTGGAGGCCTGGCTGAAGGAACTGGTCTGCTCGCCGTCAACGATGAGGTTCTCGAGGTCAACGGAATTGAGGTGACGGGCAAGACTCTAGACCAGGTCACCGACATGATGATCGCCAACAGCCACAACTTGATCGTTACGGTGAAGCCGGCTAATCAGCGTAACAATGTTGTGCGTGCCAGCCGCGTGTCAGGAAGTTCGGGTCAGTCTTCGGATAGCAGCAGCAGCTCGGGCATCACCAGCATGCAGTCTCTGCCATCTTCCATGCCTGCCGTGAGCTCCAGCTACGGCCACGATGACCTGGACAGCGATGAGGAGTTGGACATTGTCATTGAGAACAGCATCGGTCGCCAGACTCGCCAATCGAACGCCTCTCTGGCATCGCTCACATCTCGATCCACTCAGCTGACCTCTGCCTCGCCTCCCAAACCCCAAAGCAGACCGCTCTCCGTCGTGTCCACGGCATCCTTCCACTCTAACGCCAGCCTCAACGGAACAGGCCATAACAGCCTGAGCTACAGGCTTCACAGAGACCTGAACCTCCATCACACGCCCTACAACGGCGCCAGGGAAAGCAACGGCAGCCTCCACAAAATCCTCAGCAGCCTGAGGACAGACCCTCGGCACAGCCTGGCACTGCCCAGTGGCGGAGTAGAGGAGGACGGCATGGTTATcactctataacacacacacgcttggaCAGAGGTGCATCGTTATATCGCCCTCTTAACGCAATCCCACCCAGAGACTTTACAGACTGGGGCAACAGACTTGACAGCCTGGGACTTCACTGCTTTCTTAAAGCcttttgtaaaatgtaatttaacatCTTGAATTTTTACTTGTTCTTAAATGACGTGTCTTATCTTGTCTGTCGGGGGATGCATAGGGAATAGTGTGGTacatgtctcttttttctcttttgttttctcttttttccttttattagtTTTCCAGAGCCACTGATTACATACTAATTTAACATGAATGTCATTTATATCAAGATTTGCATATagaaatcacttttttttttctaaatgtctCATCGGAACATCTGTAAGGTTTAGGCCTCTCTATGACTTCTTACATACAATACAGTATATCAAAGGTTTTCCACTACCACAAGCAGTCCACTGGAATACTGGGAGAAATAAACATCACTAACGTATTAACACAAGCTTTTCGTGACTTTACCAAAGTGTTAAATGTCTCTGTTCTGTGGCTTTATATCTCATTCCAGCAGCCTGAGTATTATAGGTTACGTAGGCGAATACACTGTAATTTCATGAATCACTGTGATTTCATGGATCAagactttgtttctttctttttaaacattcttGATAATGCATCTTAGGAATATTGTGATGTTTTACTCTTTTGTTTGGACACGTGTACTCACagttgggatttttttttcctctatctGTACTATGAATTAGCACGTGTAATGCAGTGAccaaaaaagtgttaaacaaatccTCTGTTTTAACCTCTTTTTTTCTATGTTCTGGGAATCAGACGTGTCCAAATCCTCTATACAGCAATGCAGCACAGAGTTATGTCTTTCATGatgttttctgacaaacaagCACACATTTTTGTCAGGTACCTCCTAATTAATTCTCAACTTGGGCTCATGACCTgagcacacacagctgtgtacAGTCTCTGTTCTTCAGAGACGCCTCAGTTCTCAGCTTGTTTAGCTTCCACATGCAGGTGCTAACTgtccttaaaggaaaaatctgcCCTGAACGACTTGcgtattaatctttataattagtATGTTATGTTAAGTGATGTCCAAGATGAAATGAGATTAGTTTGAACTTCTTTGATTGACATGTTGCTCTGTTTTCACTTACTACATACTACATTACCCACAGTGCCAATGGGATTTAGTCCTctcttcatctctacctaagacagtgatgcagcggcgctttagtcctttagtcctttagtctgtccagctctctcacctcctcatttGTACACTCTGCTTAAACACATCAGCTtaaactttcatgctaatacccaCTGTCAACGCCGTCGCGCTAgtcatctcatagatcgctGACGAGCTGAGCCATAGCTCAGCACAGCTgcgtcatatagctgcattgcattctgggagtCCAAGGTTTGCACCAACTTCTCCACTACTTCTAGGTTGtttctcattaatgtgacaTCATTAATGTGACATCATCGTGATACACAAATGCTAAATTCTCACAGgactaataaaaatacagaaccaaccaacaaattaagATCAGAATTGCtaaacatttgtatttgtttttcatggTGGAATCTTTTGTGCACTTTTATCACCACTGGATCTGGGAACAATCATTATATAAAGCATGAATCCTGTCAGTGTTCATTTTTTAGCCCTTTAGTTAAAGAATGGTGTGTTTgggtgtctgtctgtcactcactTTTGAATCTTTTTGATGGTGTGTGCACTCCGGTTACCTGTTAGTTTTTTAGATGAGTCCATTAATGTTAGCGTGGGCAACTTGTATCCACGTACTCTTCATGATCCTGTGTGCCTTAGACCCAAACATGGGACTCTGGATAACTCAACTCCTGCATCCACTATAATCTGGCCACTGAATGTTACGTAGTTTCATTCACATGCGTATCTGTGTCACCCTCTGCTGGTCGCTACTGGAGGTCATCGACATACCAGGAACCACCTCAAATCAgagtaaatgtatatttattctgcagaatttctgaaatttaaacattgtctttgtgttttcctttctttgtttgtttttccctctGTACAACAATTTTAAGTTTGAATAAAAATCTTGATTTTATGATGA

Function

NR:

description
PREDICTED: partitioning defective 6 homolog gamma

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0035844 cloaca development biological_process
GO:0045176 apical protein localization biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0001841 neural tube formation biological_process
GO:0021510 spinal cord development biological_process
GO:0032154 cleavage furrow cellular_component
GO:0005634 nucleus cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K06093 PARD6; partitioning defective protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942423.2 True 3712 mRNA 0.45 3 5559980 5598363

Neighbor

gene id symbol gene type direction distance location
bloc1s4 LOC108272578 coding downstream 969 5550378 ~ 5559011 (-)
asns asns,LOC107754811,LOC107731557,LOC107702657,LOC107672863,LOC108410560 coding downstream 10322 5540376 ~ 5549658 (-)
umad1 umad1 coding downstream 117119 5428961 ~ 5442861 (-)
glcci1a glcci1,LOC108414387,LOC107672859 coding downstream 132377 5391522 ~ 5427603 (-)
rims3 rims3,LOC107672861,LOC107702460,LOC107598211,LOC107731575,LOC107571463 coding downstream 178554 5319003 ~ 5381426 (-)
dtnbp1b dtnbp1b,LOC108272579,LOC107754801,LOC107731565,LOC108435503,LOC107568291 coding upstream 215541 5813904 ~ 5846278 (-)
csnk2b csnk2b,LOC102207154,LOC100710962,LOC101175345,LOC102778826,LOC106573472 coding upstream 477213 6075576 ~ 6082184 (-)
prrc2a prrc2a,LOC103472915,LOC104953786 coding upstream 486546 6084909 ~ 6105333 (-)
neu1 LOC108272741,LOC103030882,LOC108411940,LOC108411932 coding upstream 510910 6109273 ~ 6114435 (-)
LOC113543800 LOC108272740,LOC108411932 coding upstream 519728 6118091 ~ 6124793 (-)
G400676 NA non-coding downstream 179043 5371072 ~ 5380937 (-)
G400622 NA non-coding downstream 280666 5278903 ~ 5279314 (-)
LOC113543905 NA non-coding downstream 317928 5240099 ~ 5242052 (-)
G400501 LOC108272940 non-coding downstream 524058 5030859 ~ 5035922 (-)
G400517 LOC108273316 non-coding downstream 547185 5012187 ~ 5012795 (-)
G400913 NA non-coding upstream 212981 5811344 ~ 5812012 (-)
G401106 NA non-coding upstream 308784 5907147 ~ 5971174 (-)
G401196 NA non-coding upstream 423191 6021554 ~ 6021765 (-)
G401230 NA non-coding upstream 498616 6096979 ~ 6187263 (-)
G401243 NA non-coding upstream 589610 6187973 ~ 6188409 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 419600 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 551516 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 924923 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 1221553 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 1400230 4150899 ~ 4159750 (-)
G401205 nelfe other upstream 574625 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 773254 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 1656070 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 2271040 7869403 ~ 7917693 (-)
G402673 NA other upstream 3545507 9143870 ~ 9161470 (-)

Expression


Co-expression Network