LOC113543899


Basic Information

Item Value
gene id LOC113543899
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5281297 ~ 5285608 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942435.2
TTAAAGTCAAACCCACTAAAAGAACAATGAAGTACCTAGTGGCTGGTCACTTCCTCGTCCTGCTCGGTGCTTTAACAGCCGTCTGTGTTCTAGGGATTCTGTATCACATGGAAGTATTCTCTAATGCCATATTAAATGAGAAGTATGCAAATGTTACAGCCATGATGAAGGTGCAAGTACACAAAGCCACTGAGTTAAAATCAGACTTGGATGAAGTTCAAGAGCGCTACAAGACCATGTTAAAGCAACTCGATGCACTAAAAGagaaagagagattgtgTGGAATGTTCAAAGAGAAGTATGAGCGAATCCACGAACTCCTCATTGCACACAATGCAAGCGAAAATTGTGGAATCTgtgaggaaggatggaaggCTTTTGGTTTAAAGTGTTACTACTTTTCCACTGAGAAACTGAACTGGACGCAGAGTCGAGACGACTGTGTTGAGAACGGAAGCCATCTGGTGATTATAACCAGCCAATCTGAACAGAATTTTGTATCTTCGCATATTAAAGAAACACACTGGATTGGCTTGAATGACTTGGAGACTGAGGGAAAGTGGATGTGGGTGAACAACCAGCCCTTAAATGAGACGGGTGTAACGTTCTGGTATAGCGAGGGCCCAAAACAGCCTGATAACTGGAAAAATCAAGACCCTTCTGGAGAGAACTGTGCTGCTCTGGGGGATGTGAATGGTAACACACATAGATGGTTTGATGCTTCTTGCTGTACGTTAAAAAAATGGATCTGTGAAAAGTAAACACTTACTGGTGCTGTTACATttgaatatgcaaaaaaatctgTACTAACTTTTCAGAAGAGGAAGACATAtctggtttatttattatttaagcctgattagttgattttttttagtctgtCAGTGGCCAGGCTTAACTTTATTTGGTatatgtccaaaaaaaaaaaatccagccaTGATTGCACACAAGATATTATAGTCCTTTAGtcctttactctctctctctgtct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942435.2 True 991 mRNA 0.40 7 5281297 5285608

Neighbor

gene id symbol gene type direction distance location
LOC113543852 LOC108262220 coding downstream 4979 5268318 ~ 5276318 (-)
LOC117596412 LOC108262220 coding downstream 18024 5258555 ~ 5263273 (-)
LOC113543750 NA coding downstream 23825 5251116 ~ 5257472 (-)
LOC113543693 LOC108273363,LOC108262220 coding downstream 49246 5229267 ~ 5232051 (-)
LOC113543887 LOC108262220 coding downstream 60040 5215000 ~ 5221257 (-)
ptp4a3a ptp4a3,LOC108272580,LOC107702466,LOC107571462,LOC107738588,LOC107598212,LOC105902033,LOC107731571,LOC103031245 coding upstream 4222 5289830 ~ 5317844 (-)
rims3 rims3,LOC107672861,LOC107702460,LOC107598211,LOC107731575,LOC107571463 coding upstream 33395 5319003 ~ 5381426 (-)
glcci1a glcci1,LOC108414387,LOC107672859 coding upstream 105914 5391522 ~ 5427603 (-)
umad1 umad1 coding upstream 143353 5428961 ~ 5442861 (-)
asns asns,LOC107754811,LOC107731557,LOC107702657,LOC107672863,LOC108410560 coding upstream 254768 5540376 ~ 5549658 (-)
G400622 NA non-coding downstream 1983 5278903 ~ 5279314 (-)
LOC113543905 NA non-coding downstream 39245 5240099 ~ 5242052 (-)
G400501 LOC108272940 non-coding downstream 245375 5030859 ~ 5035922 (-)
G400517 LOC108273316 non-coding downstream 268502 5012187 ~ 5012795 (-)
G400500 NA non-coding downstream 362414 4911350 ~ 4918883 (-)
G400676 NA non-coding upstream 85464 5371072 ~ 5380937 (-)
G400826 NA non-coding upstream 297947 5583555 ~ 5587381 (-)
G400913 NA non-coding upstream 525736 5811344 ~ 5812012 (-)
G401106 NA non-coding upstream 621539 5907147 ~ 5971174 (-)
G401196 NA non-coding upstream 735946 6021554 ~ 6021765 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 140917 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 272833 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 646240 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 942870 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 1121547 4150899 ~ 4159750 (-)
G400815 NA other upstream 301790 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 887380 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 1086009 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 1968825 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 2583795 7869403 ~ 7917693 (-)

Expression


Co-expression Network