adnp2b (LOC108273309)


Basic Information

Item Value
gene id adnp2b
gene name LOC108273309
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 9701804 ~ 9711107 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942436.2
ATTCAATGcgccattttctctttttatgtgCTTGAACAACGAAGCTACATTTAGGAATAATTCTTCAGAGCGTGTTTGCGGCGCAGTTTTTTGTCGCTGCtgctgaaaaaaaggaaaatagatTTTTGTTGTAACTGTGGCGCTGTGCATCCACGCTGCCTGTAATCGTCGTTGGCGCGCGGATTGGTGGGAAGTCTGCTTTGTCGCCCTTTTAGGAAAAAACTCcctccgaaaaaaaaaaaaaaaaaaaaaaaatcagtggcgCTAAAGAAGGGGAGGAACCATGTATCAGTTTCCAGTTCGAGGACTGGAGAAAATCCgaagaacaagaaagaaagtgaaaaacattttgacTGAATTTGGCCTTGAAGAGTGCTTAAGCTTGTGTAAGAGTCTTCAGGAGTTTGATCCAGGAGACAGCGTTTTTGATGCTACTGAATGGACTGATTTATCAGACGGATTTAATGGCAAGTGGAAGAAAAAGTGGACCTACCGCACCCGAGGACTGTGCTGCTCATTGTGTAAATTTTCGACGCGGTCCTGGTATTCATTCAGGGCTCATATTCATCGCTACCATGATGATGAGCAGTCGGTCTGCAGTCTCTCTGCCTGCTCCTCCTGCCCATTTATCGGCCACCCTAAAGTCATCTCCAAGCACTATAGGCTGTTCCATTTTGAAAACCAAAAGCCAGAATCTGACACAGTGACACCTCTGTCTGCTAAAGCATTAAGTGGACATACGTTTCAGTGCCGAAAATGCCCCGTTCGTGATGATCTCTTGTACAGCATGAGAAAGCATGTTCTCATTAATCATTACACTGTACTGTTGAATCGCTTTGCTGGACAAAGAGCAGACACTGACTTGAAGGCCCTTGGGCAGATGTACAGGAAATTTTATTGTAAGGTCTGTGGTGCAAACGCAGACACCTCTGAGCACCTGCTATATCACATACTGACCTCTGACAAGCACAGGGAATTGGATTTGCACATAAACTCTCTCATTTTTGAAACCGACACTAAGAAGCCGGCTCCCACTCTAGCACCAAAGATCCAAGGTAGTCCTGTTATAACAGGGCCACCTAGCCAACCTTTAATGACCCCTGTACCAGCTCCAGGAACAGTCTTGCCACTGGCTAATGGTGTACCTAGGTTACTCCCTCCCCCTAACACAGCAGTACTTCCTGTTCAAGCCTCAGCCCTGGTTCAGCTTGCTAGTGCTGAGGCGAAAGGTTTGCTGCAACCTGGTCAGCCACTGACTATCCAGAATGTTCAAGCTCCAAGAACTGTCTCTGCAACGCTGCCTAATGTTGGAGGAGCGACTCCTGCCACAGCACTTCAGCCGGTTATTCCACACCAACAACCAGTCAGGGTTGGAGTCCCAGGTCCTCTACATCATCCATCCCGTCAAGTTCTGCTTCCACCTGGGGTACAGTTTAATGTCCCAACTGTAAGAGGGCCACCACCACAGCCAATGATTGTTACTCCAAGGTTCCCCTTGAATCAGCCTACCCCTAGAGGTACCATGCTTACATCCCAATCCCTTCTGAGTCATCTGATCCCCACAGGCAACAAAGTCGATGGGCTGCCTACCTACACTCTCGCTCCATTACAAGTTTTGTCTGTCCAGGCAAACAACGTCCAAGTAGTCAGCAAAGCACCGTTGCCGGTGTCCCAGAACAATGGCATACATCAGCAAAACTCCCAAGATTCCAAGCAGACCAAGAAATGGGTCACCTGCCCGATTTGTAATGAGCTTTTTCCATCCAATATATATGACTCCCATGTGGAGGTCCATAAAGACTCATCCAAGAAGTCCAAGCTAGGCCTGGCTGCTCGAGCACCCTTTTTGAAGAAAATGCCTGACAAGACAGTGAAATGCCTGATGTGTAAAGTCTTGCTGTCCGAAAAGGGTATTTTTGAACATCTGATTCATGGTTTGAATTGCTTATTTTGTCCTGGGATGTTCTATTCTATCAAACAGCTGGTTGCACATATTCAGGTTGAGCACAATCCAACCCAAAAGGCCAACTGTGACTTCATGAGACGAGAGTATCGTCTTTATACTGACGAGTCTGGCCACCTCCTGTTTCCCTATTTTGACATTAACACCACAGCCCCAAAAGAGATGATGGGAGAGAAAGAGCTTAATTTGGCTCTAGTTACTAATTCGCTTGATCTGATCTTTTTGAAGATGTCACCTATGAATCCGCAGGCTGTATGCAAGATGCCCATGCCTAAGCCGGACAGCTTAGACTGCGTCTTCTGTTCTGAGAAGCTGCTGAACATGGAGTGCTATCAAATGCACCTTAGAGAAAAGCACTTCATTGTACCTACCGTCCATGCCATACTTAAAATGCCAGCATACAAGTGCATCTACTGTGGTGGGGTATACACAGGCAAAACAACGGTCAAAGCGATCAGTGTCCACATATCCAGATGTCGCTCTGCGCCCAAAACCCTCAAAGATGCTGAAAGGGTAAATTCTGGACTAACCATTGGCCCCAGAGTAAGCCAAGGTTTAATCTCCTTCCCAGCACCCCCTAGACAGACTACAGCCCCAGTCCCGGGACAGGTCCAAGCATCAGTTCCAGCACCTCAAGCTCAAGAGACAGATGCAGAAATGCAGAGCAAGTTGAGGTTGGAGCTGGCTGTGAAGGAGGCCATAGAAGctaataagagagagagagaggccagaCTAGCAAGAAAAAAGAGGTTAGAGAAAGAGAAGTTCACTGGTTTGCCTACTTCTTCAGCAGAAGTGGTGGATGATCCTTCCGTGCAGTTTGCTCTGGATCCTACAGGAATGGAGTTACGCTCCTTTGAGGCTCGTCGGGAATTCGTGAACAAGTACTTTAACAAACAGCCGTATCCAGTCAAGAAGGAGATCATTGCCCTGAGCAGCCGATTGCTGCTGAACAAAACCGATGTTGCCTGCCAGTTTGGCGCCAAACGTACCAGGTGTATGAAGCAACTGCAGCGAAACAAGGCCGCTGTCTTGTTAGGTTTCAACATGACAGAGGTGATGAAGGTGAAACACAACCTGTTTATTCCCGAAATAGAGCCAGAGAAGCCGTCCACAGAAACACAGGAAcctgaaggaaaaaataaagttaatgaAGGTGAAAAGCTTAATGAAAGTTTAGCACCTTTCGAGGCTAAATAAATGGCTCCAAAGTGACAACACATGGATAAATATACTCctcaaaacaatgcaaaaagtGTGTATGGTGTTAATGTAGATCAGTTTTCAAAGAACCAGTCATGTTATCGAAATCTTTTGTAGCCCCATTTTTCTTAGAGTTCAGTTTAATTAGTAAAGTTGAACAACTTTATGAGTTTGTATGCTGTTTGGTAAAGAGTTTGAATTGTCATCCTTCACAGAACATActgtattactgtttattacataGTTTTGAGAATGACGCCCTTATTACACCACAACTGTTTCGTGGTGTGGTTTATTTGGCCTTAATTGTCCTTTTTTGTATACCTTCcctattatatattttatttagagcTCTTTAAGTTAAAATGCATACTCCTATAGTGTGTTTGctgaaatgtaatgtatttatcGAATTATGTGCACCCCCCCCACCCCAAGACACTTTCAGTATTTCATCTTAAGTGCTTGCTCATTGATCCTGTGCCTACGTTACAGGATTGttagtaggttttttttttttttattttttatttttattttattccaagAGGActgttcatgttttcttttcaacCTTTGTAGTTATCTCTTACTGAAATCTGGGCTTTGGGATAGTATTCACTAAGTTAAGTAGTCAAATACTGTGTTAAATTTGTGAACTGACTAAATGCTCTGGCATACCGGGTCTGAGATACAACTCTGTCAGGAACATAGCGTCAGTCTGTGTCATTGCCAATTATAAGCATAGTTTATTAATATGTGTTTTTATAATGGTAAAATGTAAGGTTGTACGAAAAGTTAATGTCGGCACACAATGTGTTCAGACTTGCCTTGATGGTTTGAGTACATTTCAACATTCCCAAGGTCACAGTGTgagaaagaatgcaaaataaacagtcacagaaaaaaa

Function

NR:

description
PREDICTED: ADNP homeobox protein 2-like

GO:

id name namespace
GO:0043249 erythrocyte maturation biological_process

KEGG:

id description
K24878 ADNP2; activity-dependent neuroprotector homeobox protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942436.2 True 4076 mRNA 0.44 4 9701804 9711107

Neighbor

gene id symbol gene type direction distance location
txnl4a txnl4a,txnl4a.S,txn4a,LOC106570226,LOC106570228 coding downstream 1775 9696064 ~ 9700029 (-)
atp6v1c1b atp6v1c1,LOC108273274,LOC108424992,LOC102305030,LOC102207943,LOC100703061 coding downstream 8616 9681913 ~ 9693188 (-)
si:ch211-215i13.3 NA coding downstream 22853 9672774 ~ 9678951 (-)
spire1a LOC108273070 coding downstream 32349 9627293 ~ 9669455 (-)
fam91a1 fam91a1,LOC107724353,LOC107702086 coding downstream 89497 9586308 ~ 9612307 (-)
LOC113543808 rarb,LOC107103632 coding upstream 49777 9760884 ~ 9903805 (-)
nr1d2b nr1d2,nr1d2b,LOC108273061,LOC106570286 coding upstream 343911 10055018 ~ 10069626 (-)
rpl15 rpl15 coding upstream 369379 10080486 ~ 10084170 (-)
ube2e1 ube2e1,LOC108272959,LOC105903698,LOC107743927,LOC107655879,LOC107565235 coding upstream 385017 10096124 ~ 10113933 (-)
LOC113543865 LOC108272957,LOC101471788,LOC102229941,LOC105937694 coding upstream 410436 10121543 ~ 10182766 (-)
G402892 NA non-coding downstream 81205 9620130 ~ 9620599 (-)
LOC113543915 NA non-coding downstream 324765 9376926 ~ 9377039 (-)
G402674 sfpq,LOC106570021 non-coding downstream 559981 9139017 ~ 9141823 (-)
G402405 NA non-coding downstream 1087000 8612118 ~ 8614804 (-)
G402142 NA non-coding downstream 1179760 8521358 ~ 8522044 (-)
G403080 NA non-coding upstream 19576 9730683 ~ 9731257 (-)
G403072 NA non-coding upstream 48538 9759645 ~ 9760497 (-)
G403086 NA non-coding upstream 53567 9764674 ~ 9764904 (-)
G403134 NA non-coding upstream 151926 9863033 ~ 9863314 (-)
G403164 NA non-coding upstream 185789 9896896 ~ 9897124 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 285551 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 417311 9227395 ~ 9284493 (-)
G402673 NA other downstream 540334 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 1784111 7869403 ~ 7917693 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 2425022 7254433 ~ 7276782 (-)
si:ch73-347e22.4 NA other upstream 2066262 11777369 ~ 11790179 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 2434491 12145598 ~ 12256372 (-)
G404644 NA other upstream 2719888 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 2804209 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 2859357 12570464 ~ 12570536 (-)

Expression


Co-expression Network