sh3bp5lb (sh3bp5l,LOC108435520)


Basic Information

Item Value
gene id sh3bp5lb
gene name sh3bp5l,LOC108435520
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 6349885 ~ 6357426 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942445.2
TCTTTCAAATAAACAgatatagtgtaatatagtgaaTGTCCTGGGTTGTTAAAGACTCCGTGGGTTGTTAAAGACACTGTGTTTGGATGTGGATGAGTGAGAATGTGCCATTTGGAAAGCAGAGGGTTATTCCAGTGGAGTCTCCAAGATGAGGGGGGAAAATCCTtgacacacacttttactgCGGGCAGGGAAAGCAGGGGATGAGACGAGTCTTAACATACTCAAATAAAGGCCGCGTATGGAGCCGGGGAGGTTGCGTGAGAATCCCCCCGGTTCTGGTGAGCCCGAGGCCGGGGACTGGAGGGGAGAGACTCCCGGTGTAGAGGCAGATGAGGAGCTGAAACACAGCGCTGTGGTCAGCAGCAATGGCCCAGCATCCGAGGCTGGGTGTGTCGAGACCGGTGGGATCagggatgaagaggaggaggaggatcagTACAAAGACGAAGAACTGGACCCCAGAATACAGGAGGAACTGGAGCATCTCAACCAGGCGAGTGAGGAAATTAACAGACTGGAGCTTCAGCTGGATGAGGCACGGTCGAGCTACAGGAAAATCCTCACCGAGTCAGCACGCAAACTTAACGCTCAGGGCTCCCAGCTTGGTGCGTGCATAGAAAAAGCCCGGCCGTACTACGAAGCCCGTAGACTAGCAAAAGAGGCCCAACAGGAAACGCAGAAGGCGGCACTGCGCTATGAGCGTGCCGTCTCCATGCACACGGCTGCGAGGGAAATGGTGTACGTGGCTGAGCAGGGCCTCCTGGCTGATAGGAACACGCTGGATCCAACCTGGCAGGAGATGCTCAATCACGCAACAGCCAAGGTGAACGAGGCCGAAGAGGAGCGTCTGCGGAGCGAGAGAGAACACCAGCGAGTCACACAGCTGTGTCAGGAAGCTGAGGCGCGAGTACAGACTCTTCAGAAAGCTCTCAAGAGGGTCATCATCAAGTCTAAACCATACTTTGAACTCAAGGCTCAGTTCAACCACATCCTGGAGGAGCACAAGGCAAAGGTGGTCCAGCTGGAGGAGCGGGTGGCGAAGGTAAAGACACGCTACTCCGTTGCTCTCCGTAACCTTGAACAAATCAGCGAGCAGATCCACGCCCAGAGGGGGCGTGCTCGAGCAGCCAGGCAGCGGAACAGAGCCCGCGGAGGGCGGAGTTCCCCAGTAGGGGCGGAGGCCGAGGGCGTGATACAGGCAGGGGCTTATGGCGGAGTAGGGGTGAGTCTGCTGGATAACGATTGGGCAGATCAGGAGAAAACCAGGCAGTGGGTTGAGAAGCACAGGGAGGAGGGGTGGGGCCAAAGGGCTGAGAGGGCGGGGTCAGACTCGCTGTCCGTCATCAGCCTGCAGACCATCGCCTCGGACCTGGAGAAGTGCGACTCGGTGGAGCACCTGGGCGACTTGAGCGACGTCAGTAGTGTGAtcggagaggagagggagggggagcgagagaaagagagagcgaatGTGTTCAGGCAGGGAAAAGAGAATGAAACGGGGGCCTCAGGGACTGAACGACCTCAGAGGGATCGAGAAAACTTCGTTAAGCAACACCACAGAAGTGTGAGCTTGTAAGAAGTACTGATATAATGCACCTTAAACCTCAAGGTCCATGCCTTTACTTCAGCCTTTCATGCCTTCCTCTCTACTCTCTCAGAGGCAGTGTTACAATTCTCACTGTCTCATAAAACGGCTTTTCATTGCACTCACAGACAGAGATGTAATAGACAGAACGCAGCGTGAGTGAGAGGAAAGCGTGAAAGGCTGCAACGGAAGGCATCGAAACGCTCTATCAACTCCTCCAGGACTCCTGCTCGGCAGCAGCGGCTGAGAGATAGAAGTCATATTTAGTCAGTAATGACGGGAAGAAACTGAATAATATAGCGGGAGAAACACGTAATGACTACTTGGCATGGCGTCGTTTCTGTAATGCTGCATATAGAGCAGAGCgtaatgttacatttttctccatattaatgaataacaatAAGGGAAGAAACAGAGGGGGCGACTCATCGTGTCCTCTGGGGTTTGTAGTTCTCATGCGCTGATTCTCACTCTCACTTCAGTCATAgcaagaagggaaaaaaagggggaagAGACAGGGTgataaaagaaagacagagtgtAACTACAGTCTAACACACAGATTGTATATAGATCCCAGTGCACATCGTGGATCAGGGGCTAAAAATAGTATCAGGTTGTTtgctgtgtgagagagagagacttcagTGATTTATCACTTTGAGTTATGCTGCTTTCGTGTCAGGCATATGCTGTAATATCCATGCAGTCACTGGAATCAGtttgagctaaaaaaaaaagctgaaaccCATGAAAA

Function

symbol description
sh3bp5l Enables guanyl-nucleotide exchange factor activity. Predicted to be involved in intracellular signal transduction and negative regulation of protein tyrosine kinase activity. Predicted to be active in cytoplasm.

NR:

description
SH3 domain-binding protein 5-like

GO: NA

KEGG:

id description
K23739 SH3BP5; SH3-domain binding protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942445.2 True 2351 mRNA 0.52 7 6349885 6357426

Neighbor

gene id symbol gene type direction distance location
gabbr1b gabbr1,LOC107584305,LOC107677456 coding downstream 12434 6227853 ~ 6337451 (-)
sacm1la sacm1l,sacm1la,LOC108273174,LOC107677458,LOC107711326,LOC107694349,LOC107584306,LOC107754789,LOC105904713 coding downstream 140898 6189092 ~ 6208987 (-)
LOC113543872 zbtb12,zbtb12.2,LOC107694350,LOC107584307,LOC107595591,LOC107711327 coding downstream 165944 6175854 ~ 6183941 (-)
skiv2l skiv2l,LOC107754802,LOC107677455,LOC107711323,LOC107694354 coding downstream 178879 6150852 ~ 6171006 (-)
prrt1 prrt1,LOC108272790,LOC107694357,LOC107584308,LOC107595589,LOC107677474 coding downstream 200696 6138533 ~ 6149189 (-)
gtf2h4 gtf2h4,LOC107694324,LOC107584301,LOC107595596 coding upstream 3199 6360625 ~ 6370712 (-)
mgat1b mgat1b,LOC108272752,LOC108435525 coding upstream 35543 6392969 ~ 6405009 (-)
vars2 vars2 coding upstream 48680 6406106 ~ 6422826 (-)
c29h6orf47 c12h6orf47,LOC102784237 coding upstream 71672 6429098 ~ 6433839 (-)
si:ch211-152p11.4 LOC108272795 coding upstream 96094 6453520 ~ 6461157 (-)
G401259 NA non-coding downstream 99849 6247456 ~ 6250036 (-)
G401243 NA non-coding downstream 161476 6187973 ~ 6188409 (-)
G401230 NA non-coding downstream 162622 6096979 ~ 6187263 (-)
G401196 NA non-coding downstream 328120 6021554 ~ 6021765 (-)
G401106 NA non-coding downstream 378711 5907147 ~ 5971174 (-)
G401388 NA non-coding upstream 2328 6359754 ~ 6359977 (-)
G401403 NA non-coding upstream 47880 6405306 ~ 6405878 (-)
LOC113543850 NA non-coding upstream 78105 6435531 ~ 6437074 (-)
LOC113543912 NA non-coding upstream 78561 6435987 ~ 6436048 (-)
G401482 nsun2 non-coding upstream 208611 6566037 ~ 6567293 (-)
G401205 nelfe other downstream 174625 6172988 ~ 6175260 (-)
G400815 NA other downstream 760138 5587398 ~ 5589747 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 1209505 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 1341421 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 1714828 4597800 ~ 4635057 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 14191 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 897007 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 1511977 7869403 ~ 7917693 (-)
G402673 NA other upstream 2786444 9143870 ~ 9161470 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other upstream 2869969 9227395 ~ 9284493 (-)

Expression


Co-expression Network