LOC117596393 (LOC108272830)


Basic Information

Item Value
gene id LOC117596393
gene name LOC108272830
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4166324 ~ 4168560 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301411.1
CTTTCTGTGTAATAAAGACTAATCAAGAATTGTGGACTCCCATGAGCAGGGAAGATGCTTTGAACAGCCCTGTTTTGGGAAACAtgCACTGTGAGTATTTGCTGTTGCGTCTGTATATGGAGGACGCACGGTGTGTGGTTACTGATGACCCTACCACAAACGACGAGAGCTACACCAGTGTGATCTGCAAGCCCATGTGGTTGGACAAGGTGAAGACCAAACTACAGGATAATGAGTATAAAACAGTGAGCGAGTTTGTGCATGACATCAGGCTCATCTTTAATATCTGCCATACTTTTAACAGGGATAATAAGTCTGGCAGGATGGGAACCATAATGGAAAAGATGTTTGAGAAGGAGTTTGACACCATCTTTAAAATCCAGTAGCATTTCTGCATCTTACTGGAAGGTTTGTAAACCAAAGTCAAATACTGATGTTAATTTTTGCATTGCCACAATCTCATAAcatataaagttataaaatgaTAGCATCTGACTATTTAAGTGAACTTGTTATCTTCTATAATCTTATTAATGTTTTAGGATACAGTCTTTGAGTGAGTCAGAGCCTCAATATTATGGAACAGTTAATATTTAAAACTCAGATACTTCAACTGTAAAATCCAggctaaaaaatatatatattttattatattctatcTTTTAGTGTACAGCTTTATGACTCTGCATACTTTTATTATTCCACAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301411.1 True 709 mRNA 0.36 4 4166324 4168560

Neighbor

gene id symbol gene type direction distance location
LOC113534634 LOC108272825 coding downstream 21780 4134338 ~ 4144544 (-)
LOC113534511 NA coding downstream 48408 4106876 ~ 4117916 (-)
LOC113534503 pmm1,LOC107691086,LOC107672914 coding downstream 106833 4043045 ~ 4059491 (-)
LOC113534507 tob2,LOC107735623 coding downstream 166761 3993225 ~ 3999563 (-)
rangap1a rangap1,LOC107745514 coding downstream 228686 3927253 ~ 3937638 (-)
LOC117596407 NA coding upstream 1910 4170470 ~ 4175154 (-)
LOC113534587 NA coding upstream 10551 4179111 ~ 4187724 (-)
myl4 myl4,LOC107694961,LOC107754315,LOC107585102,LOC107740645,LOC107662407 coding upstream 170975 4339535 ~ 4345214 (-)
LOC113543884 NA coding upstream 243139 4411699 ~ 4416837 (-)
zfpm2b LOC108272465 coding upstream 250018 4418578 ~ 4456600 (-)
G399990 NA non-coding downstream 59997 4100097 ~ 4106327 (-)
G399950 NA non-coding downstream 100044 4009067 ~ 4066280 (-)
G399945 NA non-coding downstream 128393 3924966 ~ 4037931 (-)
G399913 NA non-coding downstream 248209 3916468 ~ 3918115 (-)
G399935 NA non-coding downstream 254977 3910640 ~ 3911347 (-)
G400085 NA non-coding upstream 22181 4190741 ~ 4276482 (-)
G400112 LOC108272813 non-coding upstream 65843 4234403 ~ 4293157 (-)
G400131 NA non-coding upstream 112217 4280777 ~ 4281433 (-)
G400133 NA non-coding upstream 115489 4284049 ~ 4284393 (-)
G400428 NA non-coding upstream 365281 4533841 ~ 4534131 (-)
LOC113534684 NA other downstream 6574 4150899 ~ 4159750 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 33402 4120397 ~ 4132922 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other downstream 871051 3017290 ~ 3295273 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 932000 3224065 ~ 3234324 (-)
LOC113525117 NA other downstream 969761 3147299 ~ 3196563 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 126656 4295216 ~ 4338427 (-)
polr3gla LOC108272317,LOC108415116 other upstream 429240 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 792542 4961102 ~ 5008464 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 959675 5128235 ~ 5140380 (-)
G400815 NA other upstream 1418838 5587398 ~ 5589747 (-)

Expression


Co-expression Network