styk1a (LOC108273367)


Basic Information

Item Value
gene id styk1a
gene name LOC108273367
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12465737 ~ 12482142 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301442.1
ATCTTAGCATTACTCCTTAGCCAAAATATATTTCCGGTAAGAGAAATCTGGGTGTGGAAATGAGGAAATACTGGTTAGGGCAGGGCATACCTTTAAGGTGAGTAAAGTGTAACACAACAAGAAAAGCAAAACATACAAGTTGGTTACTGATCTGTAAGACAGACAGTACGGAACGTAGAAACAGTTAAGGTTATCAACATAGGCAAGCCAAATAGTATATGGCTAGGATGTTGGATTGAACCAATATCAACAAAATctatcacagaaaaaaaaaagaatatgacaggataagaagACAACCCAGCACTGTTGCTCTTTCCTACACATCTCAGCAGCATGTTGAATTCAACTAATGTAACAAGCCTGTGTGATTCAGAAGACAGGTTATGCAtaataCAGGTATACCAACAGGAACTCATAGTGATTCCAGTGCTGCTGCTGGCAGCATTCCTTTGTTTGTTGATAAGTTTGTGTTTTCTGAGGCTGTGCCAGAAGGAGGAGATCATAAAACATAACTCCCAAAGACAACACTTCAGTAACAAGAGGCAACACCTGCAGGGCATTGATGCACCTCCAGAGCTGAACCCCTTGGCCTATGAAGTTGTACCTATGACAGTCCAAACCCAGAACCACAAGCCCAGCAGACAGCCTGCAGAACCGCAGTTGTCCACTGAGAGGCAGCATGGTTCTTTTGAGCAAATCACCCGACTGCCCCTGTCTTTCACAgtaaaaccagaaaacacagtCACTCTCTACCAGGCCACTATGGACCAGAAGCCAGTTGTCTTACGAGTGCTCAGTGAATCAGCTGATTCCAGGGAGCGCCAGGTCTTCCTGAGCTTTGCCCACTTCCTGTCAGAACTTGGGCCCCACCCATGCCTGCCCAGACTGCTAGGGGTGGTGAGAGACAAGTCACCCCTAACTATGATATTGGAGCAGCTGGAGAACAGAGATCTTCTAGGATTCTTATGGAGATGCAGACAGGGCCACCCAGGTCTGGCAGCCCAGTGTGCTATTACAGAAAGAGTGCTTTTCTCAATGGCAAGACAGATCGCCTCCGCTCTGGAACATCTACACAGTAAGAACTGCATTCATGGCAACGTTGGTGCACGAAGTGTCTTGGTTGGTCGAGACCTCTCCGTAAAGCTCTGGGGCTTTGGCCCAGCTTTTCGTAGGAGGATGAAGGTGGGGACTTCAGGGGAGGTGAAGGAAGTAGAGATGAGAAAGTGGCAAGCTCCAGAGGTGTTAGCCCGTCAACCTGTCGGTCAAAGCAGTGATATATGGTCATTTGGTATCTTGCTGTATGAAATGGTAACATTAGGGGAACCTCCCTTCCCTAAAGTAATGGCCAGTGAACTCCTGCAGTACTTACAGAGAGGGAAAAACCTAAAGAGACCAACCAACTGTTCCAACTCACTATACTCCATCATTAAGGCATGTTGTCAATGGAGACCACAAGATCGAGCTCCACTGAAGACGGTGATTTCAATGCTCCAATTTGCTGAGAGCCACGCCAGTGACACAGTGGTACTTCAAGCACCTGAGCCACTGGACATTGAGAAGTACATGCAGGAAGCGGGCTATGAAGAGGCTTACAATTTTGCTGTCCTTTAACAGGACTTTTGAAAGTAGTTGTATACTTTTGTAGGCCTAATGTAGTGGTATTCATGTTATGGGGCGTGGTCTGCTGGGGGCGGAGGGGGATGTGGTGCACAGGGATACTGCAGGCTGGGAAAAAAGCAGAACTGATTTTAGTTTGgtaatttatttagtaataaacataaacttctgcaataaatttaaacaatgtATACATGATCGGTACAAACAACTCCCAGATGCATCTGTCACCCTTAGCATGTGAAAGGGGAGTTATTTTAGGAACCATTTCAACCTTCTCAAATCTAAAATTggtcattatcatcatcatcatcatcaacaacaacaacaacacgaAATATAtaagaatttatttttgaatatatatatatatatataagaatatataaattCTATACAGGACCACTTCAAAATCTGTTTCATAATGGGATGTTTTTAATCATGACCCACATATTGTATAAGCTCTAAGCTCGGATTTTAAcctcaaataaagaaaaaaacacctggAA

Function

NR:

description
PREDICTED: tyrosine-protein kinase STYK1-like

GO: NA

KEGG:

id description
K17510 STYK1; tyrosine-protein kinase STYK1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301442.1 True 2129 mRNA 0.44 10 12465737 12482142

Neighbor

gene id symbol gene type direction distance location
zgc:194578 LOC108273361 coding downstream 3381 12447738 ~ 12462356 (-)
si:ch211-232m10.6 LOC108272566,LOC108439912,LOC101076817 coding downstream 25390 12434972 ~ 12440347 (-)
ccdc106b cc106,LOC108273335 coding downstream 38348 12420503 ~ 12427389 (-)
u2af2b u2af2,u2af2b,LOC103026862,LOC107656609,LOC108439900 coding downstream 50945 12399540 ~ 12414792 (-)
cnot3b LOC108272956,LOC108439899,LOC107656608,LOC107739521,LOC107599539,LOC102215018 coding downstream 74375 12355242 ~ 12391362 (-)
si:ch211-288g17.3 LOC108273223 coding upstream 154708 12636850 ~ 12649319 (-)
kmt2ba LOC108272954,LOC107701550 coding upstream 205620 12687762 ~ 12724515 (-)
ndufv1 ndufv1,LOC108437925,LOC103023083,LOC107693353,LOC107589403,LOC107101109 coding upstream 279570 12761712 ~ 12770681 (-)
hcn3 hcn3,LOC108437924,LOC107739502,LOC102783101,LOC103358769,LOC102202422 coding upstream 289779 12771921 ~ 12783866 (-)
si:ch211-81a5.8 NA coding upstream 308654 12790796 ~ 12793315 (-)
G404421 NA non-coding downstream 190235 12275268 ~ 12275502 (-)
G404282 NA non-coding downstream 339897 12125457 ~ 12125840 (-)
G404243 NA non-coding downstream 465227 12000266 ~ 12000510 (-)
G404241 NA non-coding downstream 468267 11997070 ~ 11997470 (-)
G404235 NA non-coding downstream 494773 11970742 ~ 11970964 (-)
G404667 NA non-coding upstream 32329 12514471 ~ 12515210 (-)
G404681 NA non-coding upstream 92938 12575080 ~ 12577284 (-)
G404682 NA non-coding upstream 94390 12576532 ~ 12578806 (-)
G404687 NA non-coding upstream 107130 12589272 ~ 12591533 (-)
G404692 NA non-coding upstream 119490 12601632 ~ 12635213 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other downstream 209365 12145598 ~ 12256372 (-)
si:ch73-347e22.4 NA other downstream 675558 11777369 ~ 11790179 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 3049484 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 3181244 9227395 ~ 9284493 (-)
G402673 NA other downstream 3304267 9143870 ~ 9161470 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 33174 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 88322 12570464 ~ 12570536 (-)
trnav-cac_23 NA other upstream 89451 12571593 ~ 12571666 (-)
trnav-cac_24 NA other upstream 91457 12573599 ~ 12573671 (-)
trnav-aac_24 NA other upstream 92598 12574740 ~ 12574815 (-)

Expression


Co-expression Network