LOC113547081


Basic Information

Item Value
gene id LOC113547081
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 644048 ~ 645951 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301443.1
ATGGCATCAAAGAAGACCTCTCGTCCTCTGAGTTATAATATTATTCTGCTTGGAAAAACAGGAGCTGGGAAAAGTGCTTCAGGAAACACCATACTAGGGAAAAAGGGGTTTATTTCCAAGAAGAGCTTTAAATCTGTAACTCAGGAGGTTCAGAAGGAAAGCGTGACTTTTGATGGAGTGACTCTTGATGTCTACGACACACCAGGACTCTTCAACACAGAAACAAGCAATGAGATTACAATAGGGAAATGGAGATCTGGCCTCCAGTTAGACGAGTCAGCTCGCACTGTGATGCTGCTGGTGATGAAGGCAGACCGATTCACAcctgaagaaaaagaaactgttTCTCTGATTGAGAACTTTATACCTAAAAATCTCCTCCAGAACACGTGGATCCTCTTCACCAGAGGAGACGAGCTGGAGAGAGAAGATCTCACTATAGAAGAGTTTATAGAAGCCACAGAGGGACTGAAGGAAGTCGTGCAGAGATTTCACAACAGATATCACGTCTTCAACAACGTCTCCCAAAGTCCAGAGCaagccagaatgttaattaataaaattaaagacGCTCTAGCAATTAACTGGAGGACTGTGTCTGTGATCGACACACCAGAGTTCTTCGACACACCAGGGTTATTCCGCACACCACGGTTATTTGACCCAACACCGTTTTCCGACTCACCACCGTTTTCTGACTCGCCACCATTTCTCGACCCACCAGGGTTTTTCGAACCACCACCGTTTCTCCACCCGCTACTGTTTTCTGACTCACCACCGTTTCTCCACCCGCTACTGTTTTCTGACTCACCACCGTTTCTCCACCCACCATGGTTATTCCACACAGTGAGGAGAAAGGAGATAAGGAGGAGTGTTTATCTGTCCAGTCCAGGACCTCACGCTTTCCTTTACATCCAGCCCATTAATATCAGATTCACTGAACAGGAGGAAAATGTTATAGAGAGATTAGAGCTGATTTTtgggagagagatgaaaaaatacacaatgatTCTCTTCACTTATGGAGACCAGTTAGAGGGAAGTTCTGTGGATATGTTGCTTCAGCAGAACAGATCTCTCAGCAGTCTAGTTGCTCAGTGTGGAGGTAGATATCACATCTTCAACAATAAAGACCTGAGAAACAGAGAGCAGGTCAGTGAGCTACTGCAGAAGATAGACAGAATGGTGGAGGAGAACGGAGGAACCTGTTACTCCTATGAGATGCATAAGGAAGCAGCAAGAATcagatggagagaggaagaggagcggAGGGAGAGACATGAACAAGAAGAGAGGAGGTTGAGAGAAGAAGCAAGACAAAGACAGGaacaggaagaaagagaagCAAGAGCCCAAAGAGAAGCAAGAGcccaaagagaagagaaagattCCTGTCTTATTACGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301443.1 True 1407 mRNA 0.45 3 644048 645951

Neighbor

gene id symbol gene type direction distance location
LOC113525082 LOC108272487,LOC108272486 coding downstream 55396 571701 ~ 588652 (-)
LOC113525090 NA coding downstream 83011 528261 ~ 561037 (-)
LOC113525088 LOC108272487,LOC108272485,LOC108272486 coding downstream 184865 418017 ~ 459183 (-)
LOC113525089 LOC108272484 coding downstream 244862 373143 ~ 399186 (-)
LOC113525087 LOC108272484 coding downstream 293479 341071 ~ 350569 (-)
LOC117595703 LOC108272505,LOC108272504 coding upstream 6547 652498 ~ 661063 (-)
sox10 sox10 coding upstream 31952 677903 ~ 692387 (-)
LOC113541895 kcnj4 coding upstream 80999 726950 ~ 734134 (-)
LOC113527787 NA coding upstream 101959 747910 ~ 751320 (-)
LOC113527126 NA coding upstream 110050 756001 ~ 765127 (-)
G398338 NA non-coding downstream 39 642402 ~ 644009 (-)
G398304 NA non-coding downstream 48059 595118 ~ 595989 (-)
LOC117596419 NA non-coding downstream 226729 414465 ~ 417319 (-)
trnar-ccu_18 NA non-coding downstream 333393 310583 ~ 310655 (-)
G398158 NA non-coding downstream 336639 307118 ~ 307409 (-)
G398393 NA non-coding upstream 195985 841936 ~ 846790 (-)
G398394 NA non-coding upstream 201794 847745 ~ 848753 (-)
G398395 NA non-coding upstream 204499 850450 ~ 851339 (-)
G398371 NA non-coding upstream 233074 879025 ~ 881892 (-)
G398403 NA non-coding upstream 237238 883189 ~ 941747 (-)
LOC117596396 NA other downstream 162040 473750 ~ 482008 (-)
pick1 pick1 other downstream 318503 312408 ~ 325545 (-)
LOC117596444 smdt1 other upstream 94292 740243 ~ 890302 (-)
fam234b fam234b other upstream 245969 891920 ~ 906375 (-)
LOC117596481 NA other upstream 261674 907625 ~ 907779 (-)
LOC117596482 NA other upstream 264118 910069 ~ 910223 (-)
LOC113536357 NA other upstream 268247 914198 ~ 914352 (-)

Expression


Co-expression Network